Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/80660f98e0eb402bd0bfaf242a5a73/659_buD-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/8d68ee9e315c95c4ee463723d5bd4a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/8d68ee9e315c95c4ee463723d5bd4a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/197b5f057a677ec6dbf9ec3464f10d/659_buD-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 252170469
[W::hts_idx_load3] The index file is older than the data file: 659_buD-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	252170469
Known Splicing Events:	249554720
Partial Novel Splicing Events:	1255255
Novel Splicing Events:	1256595
Filtered Splicing Events:	103899

Total splicing  Junctions:	467416
Known Splicing Junctions:	254842
Partial Novel Splicing Junctions:	113590
Novel Splicing Junctions:	98984

===================================================================
Create BED file ...
Create Interact file ...