File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/d8c53b26fd609a12e92e629d54a98a/.command.log
Size
2.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_cAd-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/d8c53b26fd609a12e92e629d54a98a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/c16dbd91602c1660603c38dd887c34/659_cAd-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/d8c53b26fd609a12e92e629d54a98a/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/653ac5543846d9ba02da1b5cabb099/659_cAd-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
RANBP1--LINC01900
starfusion
arriba
PTPRK--RSPO3
starfusion
arriba
PI4KA--LINC02564
starfusion
arriba
BPTF--ARL17A
starfusion
TLK2--AC240565.1
starfusion
MDN1--KCNH1
starfusion
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/7 [00:00<?, ?it/s]
Processing RANBP1--LINC01900:   0%|          | 0/7 [00:00<?, ?it/s]
Processing RANBP1--LINC01900:  14%|█▍        | 1/7 [00:00<00:00,  9.26it/s]
Processing PTPRK--RSPO3:  14%|█▍        | 1/7 [00:00<00:00,  9.26it/s]     
Processing PTPRK--RSPO3:  29%|██▊       | 2/7 [00:00<00:00,  9.48it/s]
Processing PI4KA--LINC02564:  29%|██▊       | 2/7 [00:00<00:00,  9.48it/s]
Processing PI4KA--LINC02564:  43%|████▎     | 3/7 [00:00<00:00,  9.56it/s]
Processing BPTF--ARL17A:  43%|████▎     | 3/7 [00:00<00:00,  9.56it/s]    
Processing BPTF--ARL17A:  57%|█████▋    | 4/7 [00:00<00:00,  9.59it/s]
Processing TLK2--AC240565.1:  57%|█████▋    | 4/7 [00:00<00:00,  9.59it/s]
Processing TLK2--AC240565.1:  71%|███████▏  | 5/7 [00:00<00:00,  9.62it/s]
Processing MDN1--KCNH1:  71%|███████▏  | 5/7 [00:00<00:00,  9.62it/s]     
Processing MDN1--KCNH1:  86%|████████▌ | 6/7 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  86%|████████▌ | 6/7 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4: 100%|██████████| 7/7 [00:00<00:00,  9.64it/s]
Processing TVP23C--CDRT4: 100%|██████████| 7/7 [00:00<00:00,  9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory