Done.
-parsing GTF file: /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.gtf
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.6Gty2GxEcP/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2_1.fastp.fastq.gz /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.6Gty2GxEcP/fi_workdir/tih_rna_sample_00464_B23WHTKLT4_2.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.6Gty2GxEcP/fi_workdir/tih_rna_sample_00464_B23WHTKLT4_2.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
* Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00464_B23WHTKLT4_2.star.sortedByCoord.out.bam
* Running CMD: samtools index tih_rna_sample_00464_B23WHTKLT4_2.star.sortedByCoord.out.bam
09:59:06 : INFO : Done.
-parsing GTF file: /tmp/nxf.6Gty2GxEcP/fi_workdir/tih_rna_sample_00464_B23WHTKLT4_2.gtf
-parsing /tmp/nxf.6Gty2GxEcP/fi_workdir/tih_rna_sample_00464_B23WHTKLT4_2.star.cSorted.dupsMarked.bam
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[1210000] -done parsing /tmp/nxf.6Gty2GxEcP/fi_workdir/tih_rna_sample_00464_B23WHTKLT4_2.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 16,
'low complexity anchor region' => 21,
'excessive soft clipping' => 8275,
'small anchor length' => 21,
'per_id < 96' => 5858,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 19,
' ** passed ** ' => 3353,
'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 272,
'num genes matched < 2' => 2,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 228,
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 18,
'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 16
};
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.6Gty2GxEcP/fi_workdir/tih_rna_sample_00464_B23WHTKLT4_2.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
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[9000] -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1
[1000] -fusion SPANNING read extraction for scaff: AC096582.2--SEPTIN14
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[72000] -fusion SPANNING read extraction for scaff: AC244035.1--RHEX
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[670000] -fusion SPANNING read extraction for scaff: ACTBP6--ACTB
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[315000] -fusion SPANNING read extraction for scaff: CANX--CDC25A
[1000] -fusion SPANNING read extraction for scaff: CCDC169--SOHLH2
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[14000] -fusion SPANNING read extraction for scaff: PCDHA3--PCDHA13
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[18000] -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2
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[33000] -fusion SPANNING read extraction for scaff: RAB25--PTPRO
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[16000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
-filtered reads reasons: $VAR1 = {
'lacks exon overlap' => 2405
};
EM: Starting log likelihood: -3374.394500
EM: Round [1] log likelihood: -3374.025685
EM: Round [2] log likelihood: -3374.022109
EM: Round [3] log likelihood: -3374.019372
EM: Round [4] log likelihood: -3374.016660
EM: Round [5] log likelihood: -3374.013970
EM: Round [6] log likelihood: -3374.011302
EM: Round [7] log likelihood: -3374.008656
EM: Round [8] log likelihood: -3374.006032
EM: Round [9] log likelihood: -3374.003430
EM: Round [10] log likelihood: -3374.000849
EM: Round [11] log likelihood: -3373.998289
EM: Round [12] log likelihood: -3373.995750
EM: Round [13] log likelihood: -3373.993232
EM: Round [14] log likelihood: -3373.990734
EM: Round [15] log likelihood: -3373.988256
EM: Round [16] log likelihood: -3373.985798
EM: Round [17] log likelihood: -3373.983360
EM: Round [18] log likelihood: -3373.980942
EM: Round [19] log likelihood: -3373.978543
EM: Round [20] log likelihood: -3373.976163
EM: Round [21] log likelihood: -3373.973802
EM: Round [22] log likelihood: -3373.971460
EM: Round [23] log likelihood: -3373.969136
EM: Round [24] log likelihood: -3373.966831
EM: Round [25] log likelihood: -3373.964544
EM: Round [26] log likelihood: -3373.962275
EM: Round [27] log likelihood: -3373.960024
EM: Round [28] log likelihood: -3373.957791
EM: Round [29] log likelihood: -3373.955575
EM: Round [30] log likelihood: -3373.953376
EM: Round [31] log likelihood: -3373.951195
EM: Round [32] log likelihood: -3373.949030
EM: Round [33] log likelihood: -3373.946883
EM: Round [34] log likelihood: -3373.944751
EM: Round [35] log likelihood: -3373.942637
EM: Round [36] log likelihood: -3373.940538
EM: Round [37] log likelihood: -3373.938456
EM: Round [38] log likelihood: -3373.936390
EM: Round [39] log likelihood: -3373.934340
EM: Round [40] log likelihood: -3373.932305
EM: Round [41] log likelihood: -3373.930286
EM: Round [42] log likelihood: -3373.928282
EM: Round [43] log likelihood: -3373.926294
EM: Round [44] log likelihood: -3373.924320
EM: Round [45] log likelihood: -3373.922362
EM: Round [46] log likelihood: -3373.920418
EM: Round [47] log likelihood: -3373.918489
EM: Round [48] log likelihood: -3373.916574
EM: Round [49] log likelihood: -3373.914674
EM: Round [50] log likelihood: -3373.912788
EM: Round [51] log likelihood: -3373.910916
EM: Round [52] log likelihood: -3373.909059
EM: Round [53] log likelihood: -3373.907215
EM: Round [54] log likelihood: -3373.905384
EM: Round [55] log likelihood: -3373.903568
EM: Round [56] log likelihood: -3373.901765
EM: Round [57] log likelihood: -3373.899975
EM: Round [58] log likelihood: -3373.898198
EM: Round [59] log likelihood: -3373.896435
EM: Round [60] log likelihood: -3373.894684
EM: Round [61] log likelihood: -3373.892946
EM: Round [62] log likelihood: -3373.891222
EM: Round [63] log likelihood: -3373.889509
EM: Round [64] log likelihood: -3373.887810
EM: Round [65] log likelihood: -3373.886122
EM: Round [66] log likelihood: -3373.884447
EM: Round [67] log likelihood: -3373.882784
EM: Round [68] log likelihood: -3373.881134
EM: Round [69] log likelihood: -3373.879495
EM: Round [70] log likelihood: -3373.877868
EM: Round [71] log likelihood: -3373.876253
EM: Round [72] log likelihood: -3373.874649
EM: Round [73] log likelihood: -3373.873057
EM: Round [74] log likelihood: -3373.871477
EM: Round [75] log likelihood: -3373.869908
EM: Round [76] log likelihood: -3373.868350
EM: Round [77] log likelihood: -3373.866803
EM: Round [78] log likelihood: -3373.865267
EM: Round [79] log likelihood: -3373.863743
EM: Round [80] log likelihood: -3373.862229
EM: Round [81] log likelihood: -3373.860726
EM: Round [82] log likelihood: -3373.859233
EM: Round [83] log likelihood: -3373.857752
EM: Round [84] log likelihood: -3373.856280
EM: Round [85] log likelihood: -3373.854819
EM: Round [86] log likelihood: -3373.853369
EM: Round [87] log likelihood: -3373.851929
EM: Round [88] log likelihood: -3373.850498
EM: Round [89] log likelihood: -3373.849078
EM: Round [90] log likelihood: -3373.847668
EM: Round [91] log likelihood: -3373.846268
EM: Round [92] log likelihood: -3373.844877
EM: Round [93] log likelihood: -3373.843497
EM: Round [94] log likelihood: -3373.842126
EM: Round [95] log likelihood: -3373.840764
EM: Round [96] log likelihood: -3373.839412
EM: Round [97] log likelihood: -3373.838069
EM: Round [98] log likelihood: -3373.836736
EM: Round [99] log likelihood: -3373.835412
EM: Round [100] log likelihood: -3373.834097
EM: Round [101] log likelihood: -3373.832791
EM: Round [102] log likelihood: -3373.831495
EM: Round [103] log likelihood: -3373.830207
EM: Round [104] log likelihood: -3373.828928
EM: Round [105] log likelihood: -3373.827658
EM: Round [106] log likelihood: -3373.826396
EM: Round [107] log likelihood: -3373.825144
EM: Round [108] log likelihood: -3373.823899
EM: Round [109] log likelihood: -3373.822664
EM: Round [110] log likelihood: -3373.821437
EM: Round [111] log likelihood: -3373.820218
EM: Round [112] log likelihood: -3373.819007
EM: Round [113] log likelihood: -3373.817805
EM: Round [114] log likelihood: -3373.816611
EM: Round [115] log likelihood: -3373.815425
EM: Round [116] log likelihood: -3373.814247
EM: Round [117] log likelihood: -3373.813078
EM: Round [118] log likelihood: -3373.811916
EM: Round [119] log likelihood: -3373.810762
EM: Round [120] log likelihood: -3373.809615
EM: Round [121] log likelihood: -3373.808477
EM: Round [122] log likelihood: -3373.807346
EM: Round [123] log likelihood: -3373.806223
EM: Round [124] log likelihood: -3373.805107
EM: Round [125] log likelihood: -3373.803999
EM: Round [126] log likelihood: -3373.802898
EM: Round [127] log likelihood: -3373.801805
EM: Round [128] log likelihood: -3373.800719
EM: Round [129] log likelihood: -3373.799640
EM: Round [130] log likelihood: -3373.798569
EM: Round [131] log likelihood: -3373.797504
EM: Round [132] log likelihood: -3373.796447
EM: Round [133] log likelihood: -3373.795397
EM: Round [134] log likelihood: -3373.794354
EM: Round [135] log likelihood: -3373.793317
EM: Round [136] log likelihood: -3373.792288
EM: Round [137] log likelihood: -3373.791265
EM: Round [138] log likelihood: -3373.790250
EM: Round [139] log likelihood: -3373.789240
EM: Round [140] log likelihood: -3373.788238
EM: Round [141] log likelihood: -3373.787242
EM: Round [142] log likelihood: -3373.786253
EM: Round [143] log likelihood: -3373.785271
EM: Round [144] log likelihood: -3373.784294
EM: Round [145] log likelihood: -3373.783325
EM: Round [146] log likelihood: -3373.782361
EM: Round [147] log likelihood: -3373.781404
EM: Round [148] log likelihood: -3373.780453
EM: Round [149] log likelihood: -3373.779509
EM: Round [150] log likelihood: -3373.778571
EM: Round [151] log likelihood: -3373.777638
EM: Round [152] log likelihood: -3373.776712
EM: Round [153] log likelihood: -3373.775792
EM: Round [154] log likelihood: -3373.774878
EM: Round [155] log likelihood: -3373.773970
EM: Round [156] log likelihood: -3373.773068
EM: Round [157] log likelihood: -3373.772172
EM: Round [158] log likelihood: -3373.771281
EM: Round [159] log likelihood: -3373.770397
EM: Round [160] log likelihood: -3373.769518
EM: Round [161] log likelihood: -3373.768645
EM: Round [162] log likelihood: -3373.767777
EM: Round [163] log likelihood: -3373.766915
EM: Round [164] log likelihood: -3373.766059
EM: Round [165] log likelihood: -3373.765208
EM: Round [166] log likelihood: -3373.764363
EM: Round [167] log likelihood: -3373.763523
EM: Round [168] log likelihood: -3373.762688
EM: Round [169] log likelihood: -3373.761859
EM: Round [170] log likelihood: -3373.761036
EM: Round [171] log likelihood: -3373.760217
EM: Round [172] log likelihood: -3373.759404
EM: Round [173] log likelihood: -3373.758596
EM: Round [174] log likelihood: -3373.757793
EM: Round [175] log likelihood: -3373.756996
EM: Round [176] log likelihood: -3373.756203
EM: Round [177] log likelihood: -3373.755416
EM: Round [178] log likelihood: -3373.754634
EM: Round [179] log likelihood: -3373.753856
EM: Round [180] log likelihood: -3373.753084
EM: Round [181] log likelihood: -3373.752316
EM: Round [182] log likelihood: -3373.751554
EM: Round [183] log likelihood: -3373.750796
EM: Round [184] log likelihood: -3373.750043
EM: Round [185] log likelihood: -3373.749295
EM: Round [186] log likelihood: -3373.748552
EM: Round [187] log likelihood: -3373.747813
EM: Round [188] log likelihood: -3373.747079
EM: Round [189] log likelihood: -3373.746350
EM: Round [190] log likelihood: -3373.745625
EM: Round [191] log likelihood: -3373.744905
EM: Round [192] log likelihood: -3373.744190
EM: Round [193] log likelihood: -3373.743479
EM: Round [194] log likelihood: -3373.742772
EM: Round [195] log likelihood: -3373.742070
EM: Round [196] log likelihood: -3373.741373
EM: Round [197] log likelihood: -3373.740679
EM: Round [198] log likelihood: -3373.739991
EM: Round [199] log likelihood: -3373.739306
EM: Round [200] log likelihood: -3373.738626
EM: Round [201] log likelihood: -3373.737950
EM: Round [202] log likelihood: -3373.737278
EM: Round [203] log likelihood: -3373.736611
EM: Round [204] log likelihood: -3373.735948
EM: Round [205] log likelihood: -3373.735289
EM: Round [206] log likelihood: -3373.734634
EM: Round [207] log likelihood: -3373.733983
EM: Round [208] log likelihood: -3373.733336
EM: Round [209] log likelihood: -3373.732694
EM: Round [210] log likelihood: -3373.732055
EM: Round [211] log likelihood: -3373.731420
EM: Round [212] log likelihood: -3373.730789
EM: Round [213] log likelihood: -3373.730163
EM: Round [214] log likelihood: -3373.729540
EM: Round [215] log likelihood: -3373.728921
EM: Round [216] log likelihood: -3373.728306
EM: Round [217] log likelihood: -3373.727694
EM: Round [218] log likelihood: -3373.727087
EM: Round [219] log likelihood: -3373.726483
EM: Round [220] log likelihood: -3373.725883
EM: Round [221] log likelihood: -3373.725287
EM: Round [222] log likelihood: -3373.724694
EM: Round [223] log likelihood: -3373.724106
EM: Round [224] log likelihood: -3373.723520
EM: Round [225] log likelihood: -3373.722939
EM: Round [226] log likelihood: -3373.722361
EM: Round [227] log likelihood: -3373.721786
EM: Round [228] log likelihood: -3373.721216
EM: Round [229] log likelihood: -3373.720648
EM: Round [230] log likelihood: -3373.720084
EM: Round [231] log likelihood: -3373.719524
EM: Round [232] log likelihood: -3373.718967
EM: Round [233] log likelihood: -3373.718414
EM: Round [234] log likelihood: -3373.717864
EM: Round [235] log likelihood: -3373.717317
EM: Round [236] log likelihood: -3373.716774
EM: Round [237] log likelihood: -3373.716234
EM: Round [238] log likelihood: -3373.715697
EM: Round [239] log likelihood: -3373.715164
EM: Round [240] log likelihood: -3373.714634
EM: Round [241] log likelihood: -3373.714107
EM: Round [242] log likelihood: -3373.713584
EM: Round [243] log likelihood: -3373.713063
EM: Round [244] log likelihood: -3373.712546
EM: Round [245] log likelihood: -3373.712032
EM: Round [246] log likelihood: -3373.711522
EM: Round [247] log likelihood: -3373.711014
EM: Round [248] log likelihood: -3373.710509
EM: Round [249] log likelihood: -3373.710008
EM: Round [250] log likelihood: -3373.709509
EM: Round [251] log likelihood: -3373.709014
EM: Round [252] log likelihood: -3373.708522
EM: Round [253] log likelihood: -3373.708032
EM: Round [254] log likelihood: -3373.707546
EM: Round [255] log likelihood: -3373.707063
EM: Round [256] log likelihood: -3373.706582
EM: Round [257] log likelihood: -3373.706105
EM: Round [258] log likelihood: -3373.705630
EM: Round [259] log likelihood: -3373.705158
EM: Round [260] log likelihood: -3373.704690
EM: Round [261] log likelihood: -3373.704224
EM: Round [262] log likelihood: -3373.703760
EM: Round [263] log likelihood: -3373.703300
EM: Round [264] log likelihood: -3373.702843
EM: Round [265] log likelihood: -3373.702388
EM: Round [266] log likelihood: -3373.701936
EM: Round [267] log likelihood: -3373.701487
EM: Round [268] log likelihood: -3373.701040
EM: Round [269] log likelihood: -3373.700596
EM: Round [270] log likelihood: -3373.700155
EM: Round [271] log likelihood: -3373.699717
EM: Round [272] log likelihood: -3373.699281
EM: Round [273] log likelihood: -3373.698848
EM: Round [274] log likelihood: -3373.698417
EM: Round [275] log likelihood: -3373.697989
EM: Round [276] log likelihood: -3373.697564
EM: Round [277] log likelihood: -3373.697141
EM: Round [278] log likelihood: -3373.696721
EM: Round [279] log likelihood: -3373.696303
EM: Round [280] log likelihood: -3373.695888
EM: Round [281] log likelihood: -3373.695475
EM: Round [282] log likelihood: -3373.695065
EM: Round [283] log likelihood: -3373.694657
EM: Round [284] log likelihood: -3373.694252
EM: Round [285] log likelihood: -3373.693849
EM: Round [286] log likelihood: -3373.693449
EM: Round [287] log likelihood: -3373.693050
EM: Round [288] log likelihood: -3373.692655
EM: Round [289] log likelihood: -3373.692262
EM: Round [290] log likelihood: -3373.691871
EM: Round [291] log likelihood: -3373.691482
EM: Round [292] log likelihood: -3373.691096
EM: Round [293] log likelihood: -3373.690712
EM: Round [294] log likelihood: -3373.690331
EM: Round [295] log likelihood: -3373.689951
EM: Round [296] log likelihood: -3373.689574
EM: Round [297] log likelihood: -3373.689200
EM: Round [298] log likelihood: -3373.688827
EM: Round [299] log likelihood: -3373.688457
EM: Round [300] log likelihood: -3373.688089
EM: Round [301] log likelihood: -3373.687723
EM: Round [302] log likelihood: -3373.687359
EM: Round [303] log likelihood: -3373.686998
EM: Round [304] log likelihood: -3373.686638
EM: Round [305] log likelihood: -3373.686281
EM: Round [306] log likelihood: -3373.685926
EM: Round [307] log likelihood: -3373.685573
EM: Round [308] log likelihood: -3373.685222
EM: Round [309] log likelihood: -3373.684874
EM: Round [310] log likelihood: -3373.684527
EM: Round [311] log likelihood: -3373.684182
EM: Round [312] log likelihood: -3373.683840
EM: Round [313] log likelihood: -3373.683499
EM: Round [314] log likelihood: -3373.683161
EM: Round [315] log likelihood: -3373.682824
EM: Round [316] log likelihood: -3373.682490
EM: Round [317] log likelihood: -3373.682157
EM: Round [318] log likelihood: -3373.681827
EM: Round [319] log likelihood: -3373.681498
EM: Round [320] log likelihood: -3373.681172
EM: Round [321] log likelihood: -3373.680847
EM: Round [322] log likelihood: -3373.680525
EM: Round [323] log likelihood: -3373.680204
EM: Round [324] log likelihood: -3373.679885
EM: Round [325] log likelihood: -3373.679568
EM: Round [326] log likelihood: -3373.679253
EM: Round [327] log likelihood: -3373.678940
EM: Round [328] log likelihood: -3373.678628
EM: Round [329] log likelihood: -3373.678319
EM: Round [330] log likelihood: -3373.678011
EM: Round [331] log likelihood: -3373.677705
EM: Round [332] log likelihood: -3373.677401
EM: Round [333] log likelihood: -3373.677099
EM: Round [334] log likelihood: -3373.676798
EM: Round [335] log likelihood: -3373.676499
EM: Round [336] log likelihood: -3373.676203
EM: Round [337] log likelihood: -3373.675907
EM: Round [338] log likelihood: -3373.675614
EM: Round [339] log likelihood: -3373.675322
EM: Round [340] log likelihood: -3373.675032
EM: Round [341] log likelihood: -3373.674744
EM: Round [342] log likelihood: -3373.674457
EM: Round [343] log likelihood: -3373.674173
EM: Round [344] log likelihood: -3373.673889
EM: Round [345] log likelihood: -3373.673608
EM: Round [346] log likelihood: -3373.673328
EM: Round [347] log likelihood: -3373.673050
EM: Round [348] log likelihood: -3373.672773
EM: Round [349] log likelihood: -3373.672498
EM: Round [350] log likelihood: -3373.672225
EM: Round [351] log likelihood: -3373.671953
EM: Round [352] log likelihood: -3373.671683
EM: Round [353] log likelihood: -3373.671415
EM: Round [354] log likelihood: -3373.671148
EM: Round [355] log likelihood: -3373.670882
EM: Round [356] log likelihood: -3373.670618
EM: Round [357] log likelihood: -3373.670356
EM: Round [358] log likelihood: -3373.670095
EM: Round [359] log likelihood: -3373.669836
EM: Round [360] log likelihood: -3373.669579
EM: Round [361] log likelihood: -3373.669322
EM: Round [362] log likelihood: -3373.669068
EM: Round [363] log likelihood: -3373.668815
EM: Round [364] log likelihood: -3373.668563
EM: Round [365] log likelihood: -3373.668313
EM: Round [366] log likelihood: -3373.668064
EM: Round [367] log likelihood: -3373.667817
EM: Round [368] log likelihood: -3373.667571
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EM: Round [370] log likelihood: -3373.667084
EM: Round [371] log likelihood: -3373.666842
EM: Round [372] log likelihood: -3373.666602
EM: Round [373] log likelihood: -3373.666363
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EM: Round [375] log likelihood: -3373.665890
EM: Round [376] log likelihood: -3373.665656
EM: Round [377] log likelihood: -3373.665422
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EM: Round [379] log likelihood: -3373.664960
EM: Round [380] log likelihood: -3373.664731
EM: Round [381] log likelihood: -3373.664503
EM: Round [382] log likelihood: -3373.664277
EM: Round [383] log likelihood: -3373.664052
EM: Round [384] log likelihood: -3373.663828
EM: Round [385] log likelihood: -3373.663606
EM: Round [386] log likelihood: -3373.663384
EM: Round [387] log likelihood: -3373.663165
EM: Round [388] log likelihood: -3373.662946
EM: Round [389] log likelihood: -3373.662729
EM: Round [390] log likelihood: -3373.662513
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EM: Round [392] log likelihood: -3373.662084
EM: Round [393] log likelihood: -3373.661872
EM: Round [394] log likelihood: -3373.661661
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EM: Round [396] log likelihood: -3373.661242
EM: Round [397] log likelihood: -3373.661035
EM: Round [398] log likelihood: -3373.660829
EM: Round [399] log likelihood: -3373.660624
EM: Round [400] log likelihood: -3373.660420
EM: Round [401] log likelihood: -3373.660217
EM: Round [402] log likelihood: -3373.660016
EM: Round [403] log likelihood: -3373.659816
EM: Round [404] log likelihood: -3373.659617
EM: Round [405] log likelihood: -3373.659419
EM: Round [406] log likelihood: -3373.659222
EM: Round [407] log likelihood: -3373.659026
EM: Round [408] log likelihood: -3373.658832
EM: Round [409] log likelihood: -3373.658638
EM: Round [410] log likelihood: -3373.658446
EM: Round [411] log likelihood: -3373.658255
EM: Round [412] log likelihood: -3373.658065
EM: Round [413] log likelihood: -3373.657876
EM: Round [414] log likelihood: -3373.657688
EM: Round [415] log likelihood: -3373.657501
EM: Round [416] log likelihood: -3373.657316
EM: Round [417] log likelihood: -3373.657131
EM: Round [418] log likelihood: -3373.656948
EM: Round [419] log likelihood: -3373.656765
EM: Round [420] log likelihood: -3373.656584
EM: Round [421] log likelihood: -3373.656404
EM: Round [422] log likelihood: -3373.656224
EM: Round [423] log likelihood: -3373.656046
EM: Round [424] log likelihood: -3373.655869
EM: Round [425] log likelihood: -3373.655693
EM: Round [426] log likelihood: -3373.655518
EM: Round [427] log likelihood: -3373.655343
EM: Round [428] log likelihood: -3373.655170
EM: Round [429] log likelihood: -3373.654998
EM: Round [430] log likelihood: -3373.654827
EM: Round [431] log likelihood: -3373.654657
EM: Round [432] log likelihood: -3373.654488
EM: Round [433] log likelihood: -3373.654319
EM: Round [434] log likelihood: -3373.654152
EM: Round [435] log likelihood: -3373.653986
EM: Round [436] log likelihood: -3373.653821
EM: Round [437] log likelihood: -3373.653656
EM: Round [438] log likelihood: -3373.653493
EM: Round [439] log likelihood: -3373.653331
EM: Round [440] log likelihood: -3373.653169
EM: Round [441] log likelihood: -3373.653008
EM: Round [442] log likelihood: -3373.652849
EM: Round [443] log likelihood: -3373.652690
EM: Round [444] log likelihood: -3373.652532
EM: Round [445] log likelihood: -3373.652375
EM: Round [446] log likelihood: -3373.652219
EM: Round [447] log likelihood: -3373.652064
EM: Round [448] log likelihood: -3373.651910
EM: Round [449] log likelihood: -3373.651757
EM: Round [450] log likelihood: -3373.651604
EM: Round [451] log likelihood: -3373.651453
EM: Round [452] log likelihood: -3373.651302
EM: Round [453] log likelihood: -3373.651152
EM: Round [454] log likelihood: -3373.651004
EM: Round [455] log likelihood: -3373.650855
EM: Round [456] log likelihood: -3373.650708
EM: Round [457] log likelihood: -3373.650562
EM: Round [458] log likelihood: -3373.650416
EM: Round [459] log likelihood: -3373.650272
EM: Round [460] log likelihood: -3373.650128
EM: Round [461] log likelihood: -3373.649985
EM: Round [462] log likelihood: -3373.649843
EM: Round [463] log likelihood: -3373.649701
EM: Round [464] log likelihood: -3373.649561
EM: Round [465] log likelihood: -3373.649421
EM: Round [466] log likelihood: -3373.649282
EM: Round [467] log likelihood: -3373.649144
EM: Round [468] log likelihood: -3373.649006
EM: Round [469] log likelihood: -3373.648870
EM: Round [470] log likelihood: -3373.648734
EM: Round [471] log likelihood: -3373.648599
EM: Round [472] log likelihood: -3373.648465
EM: Round [473] log likelihood: -3373.648331
EM: Round [474] log likelihood: -3373.648199
EM: Round [475] log likelihood: -3373.648067
EM: Round [476] log likelihood: -3373.647936
EM: Round [477] log likelihood: -3373.647805
EM: Round [478] log likelihood: -3373.647676
EM: Round [479] log likelihood: -3373.647547
EM: Round [480] log likelihood: -3373.647419
EM: Round [481] log likelihood: -3373.647291
EM: Round [482] log likelihood: -3373.647164
EM: Round [483] log likelihood: -3373.647038
EM: Round [484] log likelihood: -3373.646913
EM: Round [485] log likelihood: -3373.646789
EM: Round [486] log likelihood: -3373.646665
EM: Round [487] log likelihood: -3373.646542
EM: Round [488] log likelihood: -3373.646419
EM: Round [489] log likelihood: -3373.646298
EM: Round [490] log likelihood: -3373.646177
EM: Round [491] log likelihood: -3373.646056
EM: Round [492] log likelihood: -3373.645937
EM: Round [493] log likelihood: -3373.645818
EM: Round [494] log likelihood: -3373.645700
EM: Round [495] log likelihood: -3373.645582
EM: Round [496] log likelihood: -3373.645465
EM: Round [497] log likelihood: -3373.645349
EM: Round [498] log likelihood: -3373.645233
EM: Round [499] log likelihood: -3373.645118
EM: Round [500] log likelihood: -3373.645004
EM: Round [501] log likelihood: -3373.644891
EM: Round [502] log likelihood: -3373.644778
EM: Round [503] log likelihood: -3373.644665
EM: Round [504] log likelihood: -3373.644554
EM: Round [505] log likelihood: -3373.644443
EM: Round [506] log likelihood: -3373.644332
EM: Round [507] log likelihood: -3373.644223
EM: Round [508] log likelihood: -3373.644113
EM: Round [509] log likelihood: -3373.644005
EM: Round [510] log likelihood: -3373.643897
EM: Round [511] log likelihood: -3373.643790
EM: Round [512] log likelihood: -3373.643683
EM: Round [513] log likelihood: -3373.643577
EM: Round [514] log likelihood: -3373.643472
EM: Round [515] log likelihood: -3373.643367
EM: Round [516] log likelihood: -3373.643263
EM: Round [517] log likelihood: -3373.643159
EM: Round [518] log likelihood: -3373.643056
EM: Round [519] log likelihood: -3373.642954
EM: Round [520] log likelihood: -3373.642852
EM: Round [521] log likelihood: -3373.642751
EM: Round [522] log likelihood: -3373.642650
EM: Round [523] log likelihood: -3373.642550
EM: Round [524] log likelihood: -3373.642450
EM: Stopping iterations at round 524 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.consolidated.bam into /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.consolidated.bam.read_coords
CMD: touch /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.consolidated.bam.read_coords > /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.consolidated.bam.frag_coords > /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.6Gty2GxEcP/fi_workdir/tih_rna_sample_00464_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.6Gty2GxEcP/fi_workdir/tih_rna_sample_00464_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.6Gty2GxEcP/fi_workdir/tih_rna_sample_00464_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -2161.267330
EM: Round [1] log likelihood: -2161.261790
EM: Round [2] log likelihood: -2161.256311
EM: Round [3] log likelihood: -2161.250893
EM: Round [4] log likelihood: -2161.245535
EM: Round [5] log likelihood: -2161.240234
EM: Round [6] log likelihood: -2161.234992
EM: Round [7] log likelihood: -2161.229805
EM: Round [8] log likelihood: -2161.224675
EM: Round [9] log likelihood: -2161.219599
EM: Round [10] log likelihood: -2161.214577
EM: Round [11] log likelihood: -2161.209609
EM: Round [12] log likelihood: -2161.204692
EM: Round [13] log likelihood: -2161.199827
EM: Round [14] log likelihood: -2161.195013
EM: Round [15] log likelihood: -2161.190249
EM: Round [16] log likelihood: -2161.185533
EM: Round [17] log likelihood: -2161.180867
EM: Round [18] log likelihood: -2161.176248
EM: Round [19] log likelihood: -2161.171676
EM: Round [20] log likelihood: -2161.167150
EM: Round [21] log likelihood: -2161.162670
EM: Round [22] log likelihood: -2161.158235
EM: Round [23] log likelihood: -2161.153844
EM: Round [24] log likelihood: -2161.149497
EM: Round [25] log likelihood: -2161.145193
EM: Round [26] log likelihood: -2161.140931
EM: Round [27] log likelihood: -2161.136712
EM: Round [28] log likelihood: -2161.132533
EM: Round [29] log likelihood: -2161.128396
EM: Round [30] log likelihood: -2161.124298
EM: Round [31] log likelihood: -2161.120240
EM: Round [32] log likelihood: -2161.116222
EM: Round [33] log likelihood: -2161.112241
EM: Round [34] log likelihood: -2161.108299
EM: Round [35] log likelihood: -2161.104394
EM: Round [36] log likelihood: -2161.100527
EM: Round [37] log likelihood: -2161.096695
EM: Round [38] log likelihood: -2161.092900
EM: Round [39] log likelihood: -2161.089140
EM: Round [40] log likelihood: -2161.085416
EM: Round [41] log likelihood: -2161.081726
EM: Round [42] log likelihood: -2161.078070
EM: Round [43] log likelihood: -2161.074448
EM: Round [44] log likelihood: -2161.070859
EM: Round [45] log likelihood: -2161.067303
EM: Round [46] log likelihood: -2161.063780
EM: Round [47] log likelihood: -2161.060288
EM: Round [48] log likelihood: -2161.056829
EM: Round [49] log likelihood: -2161.053400
EM: Round [50] log likelihood: -2161.050003
EM: Round [51] log likelihood: -2161.046636
EM: Round [52] log likelihood: -2161.043299
EM: Round [53] log likelihood: -2161.039992
EM: Round [54] log likelihood: -2161.036714
EM: Round [55] log likelihood: -2161.033465
EM: Round [56] log likelihood: -2161.030245
EM: Round [57] log likelihood: -2161.027053
EM: Round [58] log likelihood: -2161.023890
EM: Round [59] log likelihood: -2161.020754
EM: Round [60] log likelihood: -2161.017645
EM: Round [61] log likelihood: -2161.014563
EM: Round [62] log likelihood: -2161.011508
EM: Round [63] log likelihood: -2161.008480
EM: Round [64] log likelihood: -2161.005477
EM: Round [65] log likelihood: -2161.002500
EM: Round [66] log likelihood: -2160.999549
EM: Round [67] log likelihood: -2160.996623
EM: Round [68] log likelihood: -2160.993722
EM: Round [69] log likelihood: -2160.990845
EM: Round [70] log likelihood: -2160.987993
EM: Round [71] log likelihood: -2160.985165
EM: Round [72] log likelihood: -2160.982361
EM: Round [73] log likelihood: -2160.979580
EM: Round [74] log likelihood: -2160.976822
EM: Round [75] log likelihood: -2160.974088
EM: Round [76] log likelihood: -2160.971376
EM: Round [77] log likelihood: -2160.968687
EM: Round [78] log likelihood: -2160.966020
EM: Round [79] log likelihood: -2160.963375
EM: Round [80] log likelihood: -2160.960752
EM: Round [81] log likelihood: -2160.958150
EM: Round [82] log likelihood: -2160.955570
EM: Round [83] log likelihood: -2160.953010
EM: Round [84] log likelihood: -2160.950472
EM: Round [85] log likelihood: -2160.947954
EM: Round [86] log likelihood: -2160.945457
EM: Round [87] log likelihood: -2160.942980
EM: Round [88] log likelihood: -2160.940522
EM: Round [89] log likelihood: -2160.938085
EM: Round [90] log likelihood: -2160.935667
EM: Round [91] log likelihood: -2160.933269
EM: Round [92] log likelihood: -2160.930889
EM: Round [93] log likelihood: -2160.928529
EM: Round [94] log likelihood: -2160.926187
EM: Round [95] log likelihood: -2160.923864
EM: Round [96] log likelihood: -2160.921560
EM: Round [97] log likelihood: -2160.919273
EM: Round [98] log likelihood: -2160.917005
EM: Round [99] log likelihood: -2160.914755
EM: Round [100] log likelihood: -2160.912522
EM: Round [101] log likelihood: -2160.910306
EM: Round [102] log likelihood: -2160.908108
EM: Round [103] log likelihood: -2160.905927
EM: Round [104] log likelihood: -2160.903763
EM: Round [105] log likelihood: -2160.901616
EM: Round [106] log likelihood: -2160.899485
EM: Round [107] log likelihood: -2160.897371
EM: Round [108] log likelihood: -2160.895273
EM: Round [109] log likelihood: -2160.893192
EM: Round [110] log likelihood: -2160.891126
EM: Round [111] log likelihood: -2160.889076
EM: Round [112] log likelihood: -2160.887042
EM: Round [113] log likelihood: -2160.885023
EM: Round [114] log likelihood: -2160.883020
EM: Round [115] log likelihood: -2160.881032
EM: Round [116] log likelihood: -2160.879059
EM: Round [117] log likelihood: -2160.877101
EM: Round [118] log likelihood: -2160.875157
EM: Round [119] log likelihood: -2160.873229
EM: Round [120] log likelihood: -2160.871315
EM: Round [121] log likelihood: -2160.869415
EM: Round [122] log likelihood: -2160.867529
EM: Round [123] log likelihood: -2160.865658
EM: Round [124] log likelihood: -2160.863801
EM: Round [125] log likelihood: -2160.861957
EM: Round [126] log likelihood: -2160.860127
EM: Round [127] log likelihood: -2160.858311
EM: Round [128] log likelihood: -2160.856508
EM: Round [129] log likelihood: -2160.854719
EM: Round [130] log likelihood: -2160.852943
EM: Round [131] log likelihood: -2160.851179
EM: Round [132] log likelihood: -2160.849429
EM: Round [133] log likelihood: -2160.847692
EM: Round [134] log likelihood: -2160.845968
EM: Round [135] log likelihood: -2160.844256
EM: Round [136] log likelihood: -2160.842556
EM: Round [137] log likelihood: -2160.840869
EM: Round [138] log likelihood: -2160.839195
EM: Round [139] log likelihood: -2160.837532
EM: Round [140] log likelihood: -2160.835882
EM: Round [141] log likelihood: -2160.834244
EM: Round [142] log likelihood: -2160.832617
EM: Round [143] log likelihood: -2160.831002
EM: Round [144] log likelihood: -2160.829399
EM: Round [145] log likelihood: -2160.827807
EM: Round [146] log likelihood: -2160.826227
EM: Round [147] log likelihood: -2160.824658
EM: Round [148] log likelihood: -2160.823101
EM: Round [149] log likelihood: -2160.821555
EM: Round [150] log likelihood: -2160.820019
EM: Round [151] log likelihood: -2160.818495
EM: Round [152] log likelihood: -2160.816981
EM: Round [153] log likelihood: -2160.815479
EM: Round [154] log likelihood: -2160.813986
EM: Round [155] log likelihood: -2160.812505
EM: Round [156] log likelihood: -2160.811034
EM: Round [157] log likelihood: -2160.809573
EM: Round [158] log likelihood: -2160.808123
EM: Round [159] log likelihood: -2160.806683
EM: Round [160] log likelihood: -2160.805253
EM: Round [161] log likelihood: -2160.803833
EM: Round [162] log likelihood: -2160.802424
EM: Round [163] log likelihood: -2160.801024
EM: Round [164] log likelihood: -2160.799633
EM: Round [165] log likelihood: -2160.798253
EM: Round [166] log likelihood: -2160.796882
EM: Round [167] log likelihood: -2160.795521
EM: Round [168] log likelihood: -2160.794169
EM: Round [169] log likelihood: -2160.792827
EM: Round [170] log likelihood: -2160.791494
EM: Round [171] log likelihood: -2160.790170
EM: Round [172] log likelihood: -2160.788855
EM: Round [173] log likelihood: -2160.787550
EM: Round [174] log likelihood: -2160.786253
EM: Round [175] log likelihood: -2160.784966
EM: Round [176] log likelihood: -2160.783687
EM: Round [177] log likelihood: -2160.782417
EM: Round [178] log likelihood: -2160.781156
EM: Round [179] log likelihood: -2160.779904
EM: Round [180] log likelihood: -2160.778660
EM: Round [181] log likelihood: -2160.777425
EM: Round [182] log likelihood: -2160.776198
EM: Round [183] log likelihood: -2160.774979
EM: Round [184] log likelihood: -2160.773769
EM: Round [185] log likelihood: -2160.772567
EM: Round [186] log likelihood: -2160.771373
EM: Round [187] log likelihood: -2160.770187
EM: Round [188] log likelihood: -2160.769010
EM: Round [189] log likelihood: -2160.767840
EM: Round [190] log likelihood: -2160.766679
EM: Round [191] log likelihood: -2160.765525
EM: Round [192] log likelihood: -2160.764379
EM: Round [193] log likelihood: -2160.763240
EM: Round [194] log likelihood: -2160.762110
EM: Round [195] log likelihood: -2160.760987
EM: Round [196] log likelihood: -2160.759871
EM: Round [197] log likelihood: -2160.758763
EM: Round [198] log likelihood: -2160.757663
EM: Round [199] log likelihood: -2160.756570
EM: Round [200] log likelihood: -2160.755484
EM: Round [201] log likelihood: -2160.754406
EM: Round [202] log likelihood: -2160.753334
EM: Round [203] log likelihood: -2160.752270
EM: Round [204] log likelihood: -2160.751213
EM: Round [205] log likelihood: -2160.750163
EM: Round [206] log likelihood: -2160.749120
EM: Round [207] log likelihood: -2160.748084
EM: Round [208] log likelihood: -2160.747055
EM: Round [209] log likelihood: -2160.746032
EM: Round [210] log likelihood: -2160.745017
EM: Round [211] log likelihood: -2160.744008
EM: Round [212] log likelihood: -2160.743006
EM: Round [213] log likelihood: -2160.742010
EM: Round [214] log likelihood: -2160.741021
EM: Round [215] log likelihood: -2160.740039
EM: Round [216] log likelihood: -2160.739063
EM: Round [217] log likelihood: -2160.738093
EM: Round [218] log likelihood: -2160.737130
EM: Round [219] log likelihood: -2160.736173
EM: Round [220] log likelihood: -2160.735223
EM: Round [221] log likelihood: -2160.734278
EM: Round [222] log likelihood: -2160.733340
EM: Round [223] log likelihood: -2160.732408
EM: Round [224] log likelihood: -2160.731482
EM: Round [225] log likelihood: -2160.730562
EM: Round [226] log likelihood: -2160.729649
EM: Round [227] log likelihood: -2160.728741
EM: Round [228] log likelihood: -2160.727839
EM: Round [229] log likelihood: -2160.726943
EM: Round [230] log likelihood: -2160.726052
EM: Round [231] log likelihood: -2160.725168
EM: Round [232] log likelihood: -2160.724289
EM: Round [233] log likelihood: -2160.723416
EM: Round [234] log likelihood: -2160.722549
EM: Round [235] log likelihood: -2160.721687
EM: Round [236] log likelihood: -2160.720831
EM: Round [237] log likelihood: -2160.719980
EM: Round [238] log likelihood: -2160.719135
EM: Round [239] log likelihood: -2160.718295
EM: Round [240] log likelihood: -2160.717461
EM: Round [241] log likelihood: -2160.716632
EM: Round [242] log likelihood: -2160.715809
EM: Round [243] log likelihood: -2160.714990
EM: Round [244] log likelihood: -2160.714177
EM: Round [245] log likelihood: -2160.713370
EM: Round [246] log likelihood: -2160.712567
EM: Round [247] log likelihood: -2160.711770
EM: Round [248] log likelihood: -2160.710977
EM: Round [249] log likelihood: -2160.710190
EM: Round [250] log likelihood: -2160.709408
EM: Round [251] log likelihood: -2160.708631
EM: Round [252] log likelihood: -2160.707858
EM: Round [253] log likelihood: -2160.707091
EM: Round [254] log likelihood: -2160.706329
EM: Round [255] log likelihood: -2160.705571
EM: Round [256] log likelihood: -2160.704818
EM: Round [257] log likelihood: -2160.704070
EM: Round [258] log likelihood: -2160.703327
EM: Round [259] log likelihood: -2160.702589
EM: Round [260] log likelihood: -2160.701855
EM: Round [261] log likelihood: -2160.701126
EM: Round [262] log likelihood: -2160.700401
EM: Round [263] log likelihood: -2160.699681
EM: Round [264] log likelihood: -2160.698966
EM: Round [265] log likelihood: -2160.698255
EM: Round [266] log likelihood: -2160.697549
EM: Round [267] log likelihood: -2160.696847
EM: Round [268] log likelihood: -2160.696149
EM: Round [269] log likelihood: -2160.695456
EM: Round [270] log likelihood: -2160.694768
EM: Round [271] log likelihood: -2160.694083
EM: Round [272] log likelihood: -2160.693403
EM: Round [273] log likelihood: -2160.692728
EM: Round [274] log likelihood: -2160.692056
EM: Round [275] log likelihood: -2160.691389
EM: Round [276] log likelihood: -2160.690726
EM: Round [277] log likelihood: -2160.690067
EM: Round [278] log likelihood: -2160.689412
EM: Round [279] log likelihood: -2160.688761
EM: Round [280] log likelihood: -2160.688115
EM: Round [281] log likelihood: -2160.687472
EM: Round [282] log likelihood: -2160.686833
EM: Round [283] log likelihood: -2160.686199
EM: Round [284] log likelihood: -2160.685568
EM: Round [285] log likelihood: -2160.684942
EM: Round [286] log likelihood: -2160.684319
EM: Round [287] log likelihood: -2160.683700
EM: Round [288] log likelihood: -2160.683085
EM: Round [289] log likelihood: -2160.682474
EM: Round [290] log likelihood: -2160.681866
EM: Round [291] log likelihood: -2160.681263
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EM: Round [297] log likelihood: -2160.677719
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EM: Round [304] log likelihood: -2160.673748
EM: Round [305] log likelihood: -2160.673195
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EM: Round [325] log likelihood: -2160.662816
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EM: Round [350] log likelihood: -2160.651506
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EM: Round [362] log likelihood: -2160.646657
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EM: Round [366] log likelihood: -2160.645117
EM: Round [367] log likelihood: -2160.644738
EM: Round [368] log likelihood: -2160.644361
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EM: Round [378] log likelihood: -2160.640713
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EM: Round [563] log likelihood: -2160.600850
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EM: Round [566] log likelihood: -2160.600494
EM: Round [567] log likelihood: -2160.600376
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EM: Round [570] log likelihood: -2160.600028
EM: Round [571] log likelihood: -2160.599913
EM: Round [572] log likelihood: -2160.599798
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EM: Round [576] log likelihood: -2160.599348
EM: Round [577] log likelihood: -2160.599237
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EM: Round [579] log likelihood: -2160.599017
EM: Round [580] log likelihood: -2160.598908
EM: Round [581] log likelihood: -2160.598800
EM: Round [582] log likelihood: -2160.598692
EM: Round [583] log likelihood: -2160.598584
EM: Round [584] log likelihood: -2160.598478
EM: Round [585] log likelihood: -2160.598372
EM: Round [586] log likelihood: -2160.598266
EM: Round [587] log likelihood: -2160.598162
EM: Round [588] log likelihood: -2160.598057
EM: Round [589] log likelihood: -2160.597954
EM: Round [590] log likelihood: -2160.597851
EM: Round [591] log likelihood: -2160.597748
EM: Round [592] log likelihood: -2160.597647
EM: Round [593] log likelihood: -2160.597545
EM: Round [594] log likelihood: -2160.597445
EM: Round [595] log likelihood: -2160.597345
EM: Round [596] log likelihood: -2160.597245
EM: Stopping iterations at round 596 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2_1.fastp.fastq.gz: 201478511
Warning - not locating file: /tmp/nxf.6Gty2GxEcP/tih_rna_sample_00464_B23WHTKLT4_2.gmap_trinity_GG.fusions.gff3.bed
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ls: cannot access 'IGV_inputs': No such file or directory