File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/d2c3c16f7dc188feb68a4b39c74256/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:19:10
                             Started mapping on |	Jun 08 09:25:27
                                    Finished on |	Jun 08 09:58:59
       Mapping speed, Million of reads per hour |	360.50

                          Number of input reads |	201478511
                      Average input read length |	244
                                    UNIQUE READS:
                   Uniquely mapped reads number |	193650096
                        Uniquely mapped reads % |	96.11%
                          Average mapped length |	243.43
                       Number of splices: Total |	206911370
            Number of splices: Annotated (sjdb) |	203822780
                       Number of splices: GT/AG |	204056260
                       Number of splices: GC/AG |	1545943
                       Number of splices: AT/AC |	182004
               Number of splices: Non-canonical |	1127163
                      Mismatch rate per base, % |	0.26%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.14
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5889891
             % of reads mapped to multiple loci |	2.92%
        Number of reads mapped to too many loci |	206504
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1454016
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	278004
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%