File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/cdf3b2751513048996e56055280585/.command.log
Size
5.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_cTi-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/2fd152ad21f4ec71596e0f2959fd1d/659_cTi-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/cdf3b2751513048996e56055280585/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/cdf3b2751513048996e56055280585/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/091aa11087c11d826eecb9bb9d2127/659_cTi-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AC083805.1--TSFM
starfusion
arriba
AC093890.1--SOS2
starfusion
SRGAP1--GRIP1
starfusion
arriba
AC083805.1--EEF1AKMT3
starfusion
arriba
RAP1B--SRGAP1
starfusion
arriba
TYW1--VKORC1L1
starfusion
arriba
TMEM243--AC020637.1
starfusion
EEF1AKMT3--CTDSP2
starfusion
AC020637.1--TMEM243
starfusion
TLK2P1--AC110079.1
starfusion
PPP2R3B--TMLHE
starfusion
arriba
TVP23C--CDRT4
arriba
SAV1--SOS2
arriba
CCNY--AL353600.1
arriba
CCNY--AL353600.2
arriba
CCNY--NRP1
arriba
VGLL4--ATG7
arriba
MRPS35--TMTC1
arriba
SPATA13--SPATA13
arriba
KLRC4--KLRK1
arriba

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Processing AC083805.1--TSFM:   0%|          | 0/20 [00:00<?, ?it/s]
Processing AC083805.1--TSFM:   5%|▌         | 1/20 [00:00<00:02,  9.24it/s]
Processing AC093890.1--SOS2:   5%|▌         | 1/20 [00:00<00:02,  9.24it/s]
Processing AC093890.1--SOS2:  10%|█         | 2/20 [00:00<00:01,  9.46it/s]
Processing SRGAP1--GRIP1:  10%|█         | 2/20 [00:00<00:01,  9.46it/s]   
Processing SRGAP1--GRIP1:  15%|█▌        | 3/20 [00:00<00:01,  9.54it/s]
Processing AC083805.1--EEF1AKMT3:  15%|█▌        | 3/20 [00:00<00:01,  9.54it/s]
Processing AC083805.1--EEF1AKMT3:  20%|██        | 4/20 [00:00<00:01,  9.58it/s]
Processing RAP1B--SRGAP1:  20%|██        | 4/20 [00:00<00:01,  9.58it/s]        
Processing RAP1B--SRGAP1:  25%|██▌       | 5/20 [00:00<00:01,  9.60it/s]
Processing TYW1--VKORC1L1:  25%|██▌       | 5/20 [00:00<00:01,  9.60it/s]
Processing TYW1--VKORC1L1:  30%|███       | 6/20 [00:00<00:01,  9.61it/s]
Processing TMEM243--AC020637.1:  30%|███       | 6/20 [00:00<00:01,  9.61it/s]
Processing TMEM243--AC020637.1:  35%|███▌      | 7/20 [00:00<00:01,  9.62it/s]
Processing EEF1AKMT3--CTDSP2:  35%|███▌      | 7/20 [00:00<00:01,  9.62it/s]  
Processing EEF1AKMT3--CTDSP2:  40%|████      | 8/20 [00:00<00:01,  9.62it/s]
Processing AC020637.1--TMEM243:  40%|████      | 8/20 [00:00<00:01,  9.62it/s]
Processing AC020637.1--TMEM243:  45%|████▌     | 9/20 [00:00<00:01,  9.63it/s]
Processing TLK2P1--AC110079.1:  45%|████▌     | 9/20 [00:00<00:01,  9.63it/s] 
Processing TLK2P1--AC110079.1:  50%|█████     | 10/20 [00:01<00:01,  9.63it/s]
Processing PPP2R3B--TMLHE:  50%|█████     | 10/20 [00:01<00:01,  9.63it/s]    
Processing PPP2R3B--TMLHE:  55%|█████▌    | 11/20 [00:01<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  55%|█████▌    | 11/20 [00:01<00:00,  9.64it/s] 
Processing TVP23C--CDRT4:  60%|██████    | 12/20 [00:01<00:00,  9.64it/s]
Processing SAV1--SOS2:  60%|██████    | 12/20 [00:01<00:00,  9.64it/s]   
Processing SAV1--SOS2:  65%|██████▌   | 13/20 [00:01<00:00,  9.64it/s]
Processing CCNY--AL353600.1:  65%|██████▌   | 13/20 [00:01<00:00,  9.64it/s]
Processing CCNY--AL353600.1:  70%|███████   | 14/20 [00:01<00:00,  9.64it/s]
Processing CCNY--AL353600.2:  70%|███████   | 14/20 [00:01<00:00,  9.64it/s]
Processing CCNY--AL353600.2:  75%|███████▌  | 15/20 [00:01<00:00,  9.64it/s]
Processing CCNY--NRP1:  75%|███████▌  | 15/20 [00:01<00:00,  9.64it/s]      
Processing CCNY--NRP1:  80%|████████  | 16/20 [00:01<00:00,  9.64it/s]
Processing VGLL4--ATG7:  80%|████████  | 16/20 [00:01<00:00,  9.64it/s]
Processing VGLL4--ATG7:  85%|████████▌ | 17/20 [00:01<00:00,  9.64it/s]
Processing MRPS35--TMTC1:  85%|████████▌ | 17/20 [00:01<00:00,  9.64it/s]
Processing MRPS35--TMTC1:  90%|█████████ | 18/20 [00:01<00:00,  9.64it/s]
Processing SPATA13--SPATA13:  90%|█████████ | 18/20 [00:01<00:00,  9.64it/s]
Processing SPATA13--SPATA13:  95%|█████████▌| 19/20 [00:01<00:00,  9.64it/s]
Processing KLRC4--KLRK1:  95%|█████████▌| 19/20 [00:01<00:00,  9.64it/s]    
Processing KLRC4--KLRK1: 100%|██████████| 20/20 [00:02<00:00,  9.64it/s]
Processing KLRC4--KLRK1: 100%|██████████| 20/20 [00:02<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory