File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/2edbf54d2fc84fe27dc360009e76d0/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (659_cAd-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/2edbf54d2fc84fe27dc360009e76d0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/e6847d5024734644fba8095a492cfa/659_cAd-T1-TRNA-1_B23WHTKLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/065b1cfca9416da7541a9910478948/659_cAd-T1-TRNA-1_B23WHTKLT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/2edbf54d2fc84fe27dc360009e76d0/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_cAd-T1-TRNA-1_B23WHTKLT4_1/abundance.h5
Successfully converted 659_cAd-T1-TRNA-1_B23WHTKLT4_1/abundance.h5 to 659_cAd-T1-TRNA-1_B23WHTKLT4_1_kallisto_mqc.tsv
  Sample: 659_cAd-T1-TRNA-1_B23WHTKLT4_1
  Mean Fragment Length: 132.3 bp
  Median Fragment Length: 122.0 bp
  pct_mito_est_counts: 0.007%
  pct_ribo_est_counts: 1.179%
  pct_hk_est_counts: 0.693%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.015%
  pct_ribo_tpm: 3.634%
  pct_hk_tpm: 1.054%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.009%