File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/6e3167d0d62edcc663407cb4e97308/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:21:28Z thread 410 Sample sheet being processed by common lib? Yes
2026-06-08T06:21:28Z thread 410 SampleSheet Settings: 
2026-06-08T06:21:28Z thread 410   FastqCompressionFormat = gzip
2026-06-08T06:21:28Z thread 410   NoLaneSplitting = FALSE
2026-06-08T06:21:28Z thread 410   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:21:28Z thread 410   SoftwareVersion = 4.3.6
2026-06-08T06:21:28Z thread 410 
2026-06-08T06:21:28Z thread 410 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:21:28Z thread 410 shared-thread-linux-native-asio output is disabled
2026-06-08T06:21:28Z thread 410 bcl-convert Version 4.4.6
2026-06-08T06:21:28Z thread 410 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:21:28Z thread 410 Command Line: --tiles s_4 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:21:28Z thread 410 Conversion Begins.
2026-06-08T06:21:28Z thread 410 Input BCL Information:
2026-06-08T06:21:28Z thread 410     Read Structure: 2026-06-08T06:21:28Z thread 410 Y1512026-06-08T06:21:28Z thread 410 ;2026-06-08T06:21:28Z thread 410 I102026-06-08T06:21:28Z thread 410 ;2026-06-08T06:21:28Z thread 410 I102026-06-08T06:21:28Z thread 410 ;2026-06-08T06:21:28Z thread 410 Y1512026-06-08T06:21:28Z thread 410 
2026-06-08T06:21:28Z thread 410     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:21:28Z thread 410     BCL file format: cbcl
2026-06-08T06:21:28Z thread 410     Positions file format: slocs
2026-06-08T06:21:28Z thread 410     Filter file format: filter
2026-06-08T06:21:28Z thread 410 Conversion Information:
2026-06-08T06:21:28Z thread 410     Tile filtering: converting 784/6272 tiles
2026-06-08T06:21:28Z thread 410     Sample Count for Lane 1: 96
2026-06-08T06:21:28Z thread 410     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:28Z thread 410     Sample Count for Lane 2: 96
2026-06-08T06:21:28Z thread 410     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:28Z thread 410     Sample Count for Lane 3: 96
2026-06-08T06:21:28Z thread 410     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:28Z thread 410     Sample Count for Lane 4: 96
2026-06-08T06:21:28Z thread 410     Sample Count for Lane 5: 96
2026-06-08T06:21:28Z thread 410     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:28Z thread 410     Sample Count for Lane 6: 96
2026-06-08T06:21:28Z thread 410     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:28Z thread 410     Sample Count for Lane 7: 96
2026-06-08T06:21:28Z thread 410     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:28Z thread 410     Sample Count for Lane 8: 96
2026-06-08T06:21:28Z thread 410     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:28Z thread 410     Expected number of sample FASTQ files to be created: 192
2026-06-08T06:21:28Z thread 410 # CPU hw threads available: 64
2026-06-08T06:21:28Z thread 410 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:21:28Z thread 410 SW compressors: 64
2026-06-08T06:21:28Z thread 410 SW decompressors: 32
2026-06-08T06:21:28Z thread 410 SW FASTQ compression level: 1
2026-06-08T07:01:25Z thread 410 Lane 4 Post-run Information:
2026-06-08T07:01:25Z thread 410     Total clusters: 3820642153
2026-06-08T07:01:25Z thread 410     Total Genomic Reads: 7641284306
2026-06-08T07:01:25Z thread 410     Total Genomic Input Gigabases 1153.83
2026-06-08T07:01:25Z thread 410     Minimum reads for a sample: 206434
2026-06-08T07:01:25Z thread 410     Maximum reads for a sample: 153371948
2026-06-08T07:01:25Z thread 410     Average reads per sample: 74187213.00
2026-06-08T07:01:25Z thread 410     Undetermined reads: 519311858
2026-06-08T07:01:26Z thread 410 Conversion Complete.