.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC (659_ciZ-T1-TRNA-1_B23WHTKLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/0a9d1eb3bb8abf6b5f7525f9ad9e71/.command.sh
Size: 483 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC (659_ciZ-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
rseqc_to_multiqc.py \
    --bam-stat 659_ciZ-T1-TRNA-1_B23WHTKLT4_1.bam_stat.txt \
    --infer-experiment 659_ciZ-T1-TRNA-1_B23WHTKLT4_1.infer_experiment.txt \
    --sample-id 659_ciZ-T1-TRNA-1_B23WHTKLT4_1 \
    -o 659_ciZ-T1-TRNA-1_B23WHTKLT4_1_rseqc_extra_mqc.tsv

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC":
    python: $(python3 --version | sed 's/Python //g')
    rseqc_to_multiqc: 1.0.0
END_VERSIONS