File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/306087652c435fbfc4877aed824bed/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 5 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 391
  Pass (FILTER=PASS): 70 (17.9%)
  Fail (FILTER=FAIL): 321 (82.1%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 5
  All 5 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 51
  confidence_below_min(medium<high): 46
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 45
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 41
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 20
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 14
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 13
  confidence_below_min(low<high): 12
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 11
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 9
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 9
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 9
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 6
  total_reads_below_min(5.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 6

Breakdown by confidence:
  high: 70 pass, 18 fail (total: 88)
  low: 0 pass, 152 fail (total: 152)
  medium: 0 pass, 151 fail (total: 151)
Arriba filter: 391 rows -> 70 PASS; wrote tih_rna_sample_00461_B23WHTKLT4_2.arriba.fusions.filtered.tsv and tih_rna_sample_00461_B23WHTKLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00461_B23WHTKLT4_2.arriba.fusions.filter_summary.txt