[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	350652746
Known Splicing Events:	347449450
Partial Novel Splicing Events:	1580790
Novel Splicing Events:	1466549
Filtered Splicing Events:	155957

Total splicing  Junctions:	455383
Known Splicing Junctions:	247190
Partial Novel Splicing Junctions:	101913
Novel Splicing Junctions:	106280

===================================================================
Create BED file ...
Create Interact file ...