Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/1802f773101f279965a5057dc9b41c/659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/c6214836b66bf1b8191efe7c53213e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/c6214836b66bf1b8191efe7c53213e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/31e4ce64f6d1ae3ad80c5e6631c367/659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 350652746
[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	350652746
Known Splicing Events:	347449450
Partial Novel Splicing Events:	1580790
Novel Splicing Events:	1466549
Filtered Splicing Events:	155957

Total splicing  Junctions:	455383
Known Splicing Junctions:	247190
Partial Novel Splicing Junctions:	101913
Novel Splicing Junctions:	106280

===================================================================
Create BED file ...
Create Interact file ...