Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_c95-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_c95-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_c95-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:10:22.416 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:10:22 GMT 2026] MarkDuplicates --INPUT 659_c95-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_c95-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_c95-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:10:22 GMT 2026] Executing as ?@nf-36a7da86e0763952fa13505f87d21a5e-3a919-227pz on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:10:22 MarkDuplicates Start of doWork freeMemory: 105828584; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:10:22 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:10:22 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,348,903
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 2077 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:2,303,986
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 4594 as yet unmatched pairs. 732 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:8,014,121
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 5727 as yet unmatched pairs. 117 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:10,646,172
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 7544 as yet unmatched pairs. 341 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:12,276,615
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 10073 as yet unmatched pairs. 1102 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:16,393,392
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 10941 as yet unmatched pairs. 546 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,172,939
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 12931 as yet unmatched pairs. 875 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:21,824,121
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 14474 as yet unmatched pairs. 837 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,639,068
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 18725 as yet unmatched pairs. 3472 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:23,695,839
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 16911 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:26,554,612
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 18561 as yet unmatched pairs. 332 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:27,988,636
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 20158 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:31,915,903
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 24059 as yet unmatched pairs. 2573 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:33,426,264
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 23158 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 09:10:54 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:36,301,050
INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 24851 as yet unmatched pairs. 112 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:39,428,171
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 27270 as yet unmatched pairs. 946 records in RAM.
INFO 2026-06-08 09:10:58 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:42,456,874
INFO 2026-06-08 09:10:58 MarkDuplicates Tracking 28972 as yet unmatched pairs. 1164 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:43,683,771
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 29965 as yet unmatched pairs. 350 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:45,568,981
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 34051 as yet unmatched pairs. 2832 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:51,783,915
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 33181 as yet unmatched pairs. 470 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:54,041,771
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 36128 as yet unmatched pairs. 1846 records in RAM.
INFO 2026-06-08 09:11:08 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:63,557,141
INFO 2026-06-08 09:11:08 MarkDuplicates Tracking 35902 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 09:11:10 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:78,655,175
INFO 2026-06-08 09:11:10 MarkDuplicates Tracking 37362 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:92,320,609
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 38900 as yet unmatched pairs. 265 records in RAM.
INFO 2026-06-08 09:11:13 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:102,934,507
INFO 2026-06-08 09:11:13 MarkDuplicates Tracking 40185 as yet unmatched pairs. 242 records in RAM.
INFO 2026-06-08 09:11:15 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:110,039,130
INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 41736 as yet unmatched pairs. 321 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:113,614,634
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 44108 as yet unmatched pairs. 1132 records in RAM.
INFO 2026-06-08 09:11:18 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:116,399,487
INFO 2026-06-08 09:11:18 MarkDuplicates Tracking 45474 as yet unmatched pairs. 1086 records in RAM.
INFO 2026-06-08 09:11:20 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:119,940,584
INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 47370 as yet unmatched pairs. 1549 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:120,830,478
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 47718 as yet unmatched pairs. 821 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:146,113,733
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 47869 as yet unmatched pairs. 220 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:148,550,379
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 49412 as yet unmatched pairs. 1087 records in RAM.
INFO 2026-06-08 09:11:26 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:149,488,013
INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 49355 as yet unmatched pairs. 442 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:150,552,369
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 50358 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:151,301,923
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 51930 as yet unmatched pairs. 216 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:153,932,430
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 53541 as yet unmatched pairs. 570 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:154,584,994
INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 55623 as yet unmatched pairs. 1173 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:155,140,006
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 57395 as yet unmatched pairs. 1352 records in RAM.
INFO 2026-06-08 09:11:35 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:155,721,554
INFO 2026-06-08 09:11:35 MarkDuplicates Tracking 58453 as yet unmatched pairs. 1069 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:156,268,291
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 59442 as yet unmatched pairs. 388 records in RAM.
INFO 2026-06-08 09:11:38 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:160,093,059
INFO 2026-06-08 09:11:38 MarkDuplicates Tracking 60809 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 09:11:40 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:161,193,241
INFO 2026-06-08 09:11:40 MarkDuplicates Tracking 62298 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:165,651,065
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 63880 as yet unmatched pairs. 390 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:171,579,433
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 66304 as yet unmatched pairs. 1420 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:180,836,526
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 66466 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 09:11:46 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:186,323,753
INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 69856 as yet unmatched pairs. 2050 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:198,734,199
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 70511 as yet unmatched pairs. 1470 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:202,943,786
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 72355 as yet unmatched pairs. 1696 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:204,469,653
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 72443 as yet unmatched pairs. 364 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:208,092,785
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 73592 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:220,107,100
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 76106 as yet unmatched pairs. 1073 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:225,497,726
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 77031 as yet unmatched pairs. 625 records in RAM.
INFO 2026-06-08 09:11:59 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:228,106,863
INFO 2026-06-08 09:11:59 MarkDuplicates Tracking 78533 as yet unmatched pairs. 614 records in RAM.
INFO 2026-06-08 09:12:01 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:232,425,659
INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 80127 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 09:12:02 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:236,541,661
INFO 2026-06-08 09:12:02 MarkDuplicates Tracking 82045 as yet unmatched pairs. 425 records in RAM.
INFO 2026-06-08 09:12:04 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:245,915,629
INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 83156 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 09:12:07 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr2:9,327,824
INFO 2026-06-08 09:12:07 MarkDuplicates Tracking 84954 as yet unmatched pairs. 84194 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:20,203,096
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 87669 as yet unmatched pairs. 86905 records in RAM.
INFO 2026-06-08 09:12:10 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:26,778,183
INFO 2026-06-08 09:12:10 MarkDuplicates Tracking 88123 as yet unmatched pairs. 87351 records in RAM.
INFO 2026-06-08 09:12:12 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:30,753,138
INFO 2026-06-08 09:12:12 MarkDuplicates Tracking 89358 as yet unmatched pairs. 88582 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 140008 as yet unmatched pairs. 86777 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,265
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 755556 as yet unmatched pairs. 56889 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 819808 as yet unmatched pairs. 53786 records in RAM.
INFO 2026-06-08 09:12:19 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr2:40,429,093
INFO 2026-06-08 09:12:19 MarkDuplicates Tracking 868996 as yet unmatched pairs. 50414 records in RAM.
INFO 2026-06-08 09:12:21 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:47,161,765
INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 869267 as yet unmatched pairs. 50672 records in RAM.
INFO 2026-06-08 09:12:22 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:55,578,261
INFO 2026-06-08 09:12:22 MarkDuplicates Tracking 865973 as yet unmatched pairs. 47363 records in RAM.
INFO 2026-06-08 09:12:24 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:64,552,849
INFO 2026-06-08 09:12:24 MarkDuplicates Tracking 864851 as yet unmatched pairs. 46230 records in RAM.
INFO 2026-06-08 09:12:26 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:70,288,162
INFO 2026-06-08 09:12:26 MarkDuplicates Tracking 863346 as yet unmatched pairs. 44714 records in RAM.
INFO 2026-06-08 09:12:27 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:74,368,731
INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 862503 as yet unmatched pairs. 43856 records in RAM.
INFO 2026-06-08 09:12:29 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:85,401,820
INFO 2026-06-08 09:12:29 MarkDuplicates Tracking 861783 as yet unmatched pairs. 43128 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,242
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 862111 as yet unmatched pairs. 43445 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:96,268,570
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 858222 as yet unmatched pairs. 39545 records in RAM.
INFO 2026-06-08 09:12:34 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:98,618,157
INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 856424 as yet unmatched pairs. 37741 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:108,470,697
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 855495 as yet unmatched pairs. 36766 records in RAM.
INFO 2026-06-08 09:12:37 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:109,837,108
INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 854087 as yet unmatched pairs. 35356 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:113,195,726
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 854258 as yet unmatched pairs. 35518 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:127,719,345
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 851961 as yet unmatched pairs. 33201 records in RAM.
INFO 2026-06-08 09:12:41 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:136,115,512
INFO 2026-06-08 09:12:41 MarkDuplicates Tracking 853208 as yet unmatched pairs. 34438 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:157,737,434
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 849223 as yet unmatched pairs. 30426 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:172,474,981
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 847795 as yet unmatched pairs. 28981 records in RAM.
INFO 2026-06-08 09:12:46 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:178,587,995
INFO 2026-06-08 09:12:46 MarkDuplicates Tracking 846423 as yet unmatched pairs. 27602 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:188,989,405
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 850447 as yet unmatched pairs. 31604 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:189,064,556
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 844319 as yet unmatched pairs. 25458 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:197,001,837
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 841955 as yet unmatched pairs. 23085 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:201,398,329
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 840625 as yet unmatched pairs. 21749 records in RAM.
INFO 2026-06-08 09:12:56 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:208,248,614
INFO 2026-06-08 09:12:56 MarkDuplicates Tracking 840060 as yet unmatched pairs. 21176 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,609
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 855646 as yet unmatched pairs. 36746 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,405
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 853693 as yet unmatched pairs. 34787 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,207
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 849440 as yet unmatched pairs. 30531 records in RAM.
INFO 2026-06-08 09:13:02 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,546
INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 840831 as yet unmatched pairs. 21922 records in RAM.
INFO 2026-06-08 09:13:04 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,227
INFO 2026-06-08 09:13:04 MarkDuplicates Tracking 848407 as yet unmatched pairs. 29493 records in RAM.
INFO 2026-06-08 09:13:06 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:215,422,097
INFO 2026-06-08 09:13:06 MarkDuplicates Tracking 837502 as yet unmatched pairs. 18583 records in RAM.
INFO 2026-06-08 09:13:08 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,448
INFO 2026-06-08 09:13:08 MarkDuplicates Tracking 837611 as yet unmatched pairs. 18690 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:218,264,260
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 828828 as yet unmatched pairs. 9904 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:219,539,859
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 828385 as yet unmatched pairs. 9451 records in RAM.
INFO 2026-06-08 09:13:14 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:230,185,989
INFO 2026-06-08 09:13:14 MarkDuplicates Tracking 825782 as yet unmatched pairs. 6837 records in RAM.
INFO 2026-06-08 09:13:16 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:232,791,052
INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 824345 as yet unmatched pairs. 5368 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:237,371,774
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 825968 as yet unmatched pairs. 6982 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:240,509,985
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 821003 as yet unmatched pairs. 2013 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:241,670,763
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 819612 as yet unmatched pairs. 617 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr3:9,928,432
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 818286 as yet unmatched pairs. 40057 records in RAM.
INFO 2026-06-08 09:13:25 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:13,399,812
INFO 2026-06-08 09:13:25 MarkDuplicates Tracking 816472 as yet unmatched pairs. 38237 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:25,642,372
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 815312 as yet unmatched pairs. 37061 records in RAM.
INFO 2026-06-08 09:13:28 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:36,991,555
INFO 2026-06-08 09:13:28 MarkDuplicates Tracking 813179 as yet unmatched pairs. 34919 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:40,461,480
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 814568 as yet unmatched pairs. 36293 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:45,595,824
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 810451 as yet unmatched pairs. 32171 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr3:47,407,695
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 808456 as yet unmatched pairs. 30174 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:48,587,292
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 806562 as yet unmatched pairs. 28272 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:49,095,953
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 805395 as yet unmatched pairs. 27101 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:49,962,649
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 803862 as yet unmatched pairs. 25548 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:52,379,945
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 801641 as yet unmatched pairs. 23324 records in RAM.
INFO 2026-06-08 09:13:41 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:57,248,277
INFO 2026-06-08 09:13:41 MarkDuplicates Tracking 800145 as yet unmatched pairs. 21820 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:75,738,608
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 798421 as yet unmatched pairs. 20085 records in RAM.
INFO 2026-06-08 09:13:45 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:101,853,194
INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 798750 as yet unmatched pairs. 20411 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:113,005,775
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 796110 as yet unmatched pairs. 17746 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:121,698,288
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 795027 as yet unmatched pairs. 16636 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:125,013,785
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 793865 as yet unmatched pairs. 15465 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr3:129,170,437
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 792856 as yet unmatched pairs. 14439 records in RAM.
INFO 2026-06-08 09:13:53 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:132,488,999
INFO 2026-06-08 09:13:53 MarkDuplicates Tracking 790395 as yet unmatched pairs. 11968 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:139,373,763
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 789557 as yet unmatched pairs. 11099 records in RAM.
INFO 2026-06-08 09:13:58 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr3:150,545,759
INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 787922 as yet unmatched pairs. 9452 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:161,346,316
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 785472 as yet unmatched pairs. 6993 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr3:180,604,512
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 784749 as yet unmatched pairs. 6256 records in RAM.
INFO 2026-06-08 09:14:04 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr3:184,317,378
INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 783816 as yet unmatched pairs. 5315 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:188,866,325
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 781940 as yet unmatched pairs. 3423 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:195,662,604
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 780044 as yet unmatched pairs. 1515 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr4:672,476
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 778983 as yet unmatched pairs. 24159 records in RAM.
INFO 2026-06-08 09:14:11 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr4:1,918,252
INFO 2026-06-08 09:14:11 MarkDuplicates Tracking 776740 as yet unmatched pairs. 21898 records in RAM.
INFO 2026-06-08 09:14:13 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:6,269,927
INFO 2026-06-08 09:14:13 MarkDuplicates Tracking 774981 as yet unmatched pairs. 20124 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:13,627,533
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 773363 as yet unmatched pairs. 18487 records in RAM.
INFO 2026-06-08 09:14:16 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr4:38,891,801
INFO 2026-06-08 09:14:16 MarkDuplicates Tracking 772187 as yet unmatched pairs. 17296 records in RAM.
INFO 2026-06-08 09:14:18 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr4:42,627,009
INFO 2026-06-08 09:14:18 MarkDuplicates Tracking 770953 as yet unmatched pairs. 16046 records in RAM.
INFO 2026-06-08 09:14:19 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:56,930,064
INFO 2026-06-08 09:14:19 MarkDuplicates Tracking 768956 as yet unmatched pairs. 14028 records in RAM.
INFO 2026-06-08 09:14:21 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr4:73,085,319
INFO 2026-06-08 09:14:21 MarkDuplicates Tracking 768115 as yet unmatched pairs. 13179 records in RAM.
INFO 2026-06-08 09:14:23 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr4:77,055,228
INFO 2026-06-08 09:14:23 MarkDuplicates Tracking 767969 as yet unmatched pairs. 13022 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:86,717,105
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 764665 as yet unmatched pairs. 9712 records in RAM.
INFO 2026-06-08 09:14:26 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:99,035,399
INFO 2026-06-08 09:14:26 MarkDuplicates Tracking 763565 as yet unmatched pairs. 8591 records in RAM.
INFO 2026-06-08 09:14:28 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:109,729,681
INFO 2026-06-08 09:14:28 MarkDuplicates Tracking 762138 as yet unmatched pairs. 7151 records in RAM.
INFO 2026-06-08 09:14:30 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr4:127,643,834
INFO 2026-06-08 09:14:30 MarkDuplicates Tracking 760620 as yet unmatched pairs. 5618 records in RAM.
INFO 2026-06-08 09:14:32 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:146,097,307
INFO 2026-06-08 09:14:32 MarkDuplicates Tracking 759265 as yet unmatched pairs. 4236 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:155,925,916
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 757956 as yet unmatched pairs. 2913 records in RAM.
INFO 2026-06-08 09:14:35 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr4:176,328,188
INFO 2026-06-08 09:14:35 MarkDuplicates Tracking 756663 as yet unmatched pairs. 1600 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr5:620,210
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 755029 as yet unmatched pairs. 48530 records in RAM.
INFO 2026-06-08 09:14:40 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:14,291,096
INFO 2026-06-08 09:14:40 MarkDuplicates Tracking 755326 as yet unmatched pairs. 48816 records in RAM.
INFO 2026-06-08 09:14:42 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr5:32,126,427
INFO 2026-06-08 09:14:42 MarkDuplicates Tracking 752524 as yet unmatched pairs. 46005 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:39,137,704
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 750317 as yet unmatched pairs. 43789 records in RAM.
INFO 2026-06-08 09:14:46 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:54,518,717
INFO 2026-06-08 09:14:46 MarkDuplicates Tracking 748938 as yet unmatched pairs. 42405 records in RAM.
INFO 2026-06-08 09:14:48 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:68,226,742
INFO 2026-06-08 09:14:48 MarkDuplicates Tracking 747568 as yet unmatched pairs. 41028 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:71,548,723
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 746827 as yet unmatched pairs. 40274 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:77,291,659
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 745080 as yet unmatched pairs. 38512 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:83,538,515
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 744753 as yet unmatched pairs. 38173 records in RAM.
INFO 2026-06-08 09:14:54 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:93,741,078
INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 742685 as yet unmatched pairs. 36100 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:108,867,784
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 741277 as yet unmatched pairs. 34660 records in RAM.
INFO 2026-06-08 09:14:58 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:119,478,978
INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 740592 as yet unmatched pairs. 33970 records in RAM.
INFO 2026-06-08 09:15:00 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:132,378,386
INFO 2026-06-08 09:15:00 MarkDuplicates Tracking 738724 as yet unmatched pairs. 32063 records in RAM.
INFO 2026-06-08 09:15:01 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:134,649,123
INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 737549 as yet unmatched pairs. 30852 records in RAM.
INFO 2026-06-08 09:15:03 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:138,558,625
INFO 2026-06-08 09:15:03 MarkDuplicates Tracking 737751 as yet unmatched pairs. 31052 records in RAM.
INFO 2026-06-08 09:15:05 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:140,528,554
INFO 2026-06-08 09:15:05 MarkDuplicates Tracking 735567 as yet unmatched pairs. 28850 records in RAM.
INFO 2026-06-08 09:15:06 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:141,247,476
INFO 2026-06-08 09:15:06 MarkDuplicates Tracking 732666 as yet unmatched pairs. 25943 records in RAM.
INFO 2026-06-08 09:15:08 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:141,878,278
INFO 2026-06-08 09:15:08 MarkDuplicates Tracking 731014 as yet unmatched pairs. 24290 records in RAM.
INFO 2026-06-08 09:15:11 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr5:149,627,198
INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 729841 as yet unmatched pairs. 23105 records in RAM.
INFO 2026-06-08 09:15:12 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,179
INFO 2026-06-08 09:15:12 MarkDuplicates Tracking 784890 as yet unmatched pairs. 78154 records in RAM.
INFO 2026-06-08 09:15:14 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,687
INFO 2026-06-08 09:15:14 MarkDuplicates Tracking 763285 as yet unmatched pairs. 56538 records in RAM.
INFO 2026-06-08 09:15:16 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr5:150,406,306
INFO 2026-06-08 09:15:16 MarkDuplicates Tracking 779498 as yet unmatched pairs. 72751 records in RAM.
INFO 2026-06-08 09:15:18 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr5:150,648,191
INFO 2026-06-08 09:15:18 MarkDuplicates Tracking 723729 as yet unmatched pairs. 16982 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:154,793,660
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 723298 as yet unmatched pairs. 16537 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:168,502,096
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 720393 as yet unmatched pairs. 13624 records in RAM.
INFO 2026-06-08 09:15:24 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,756
INFO 2026-06-08 09:15:24 MarkDuplicates Tracking 737095 as yet unmatched pairs. 30312 records in RAM.
INFO 2026-06-08 09:15:25 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:176,532,028
INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 718628 as yet unmatched pairs. 11827 records in RAM.
INFO 2026-06-08 09:15:27 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:177,332,144
INFO 2026-06-08 09:15:27 MarkDuplicates Tracking 721082 as yet unmatched pairs. 14276 records in RAM.
INFO 2026-06-08 09:15:29 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:178,120,386
INFO 2026-06-08 09:15:29 MarkDuplicates Tracking 715902 as yet unmatched pairs. 9092 records in RAM.
INFO 2026-06-08 09:15:30 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:179,705,689
INFO 2026-06-08 09:15:30 MarkDuplicates Tracking 720136 as yet unmatched pairs. 13315 records in RAM.
INFO 2026-06-08 09:15:32 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:179,820,975
INFO 2026-06-08 09:15:32 MarkDuplicates Tracking 728157 as yet unmatched pairs. 21328 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,514
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 720541 as yet unmatched pairs. 13710 records in RAM.
INFO 2026-06-08 09:15:35 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:181,232,822
INFO 2026-06-08 09:15:35 MarkDuplicates Tracking 708069 as yet unmatched pairs. 1235 records in RAM.
INFO 2026-06-08 09:15:37 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:3,723,645
INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 706447 as yet unmatched pairs. 38359 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:7,883,138
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 705744 as yet unmatched pairs. 37644 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:18,207,394
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 703520 as yet unmatched pairs. 35377 records in RAM.
INFO 2026-06-08 09:15:42 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:26,368,873
INFO 2026-06-08 09:15:42 MarkDuplicates Tracking 702365 as yet unmatched pairs. 34210 records in RAM.
INFO 2026-06-08 09:15:44 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:29,889,348
INFO 2026-06-08 09:15:44 MarkDuplicates Tracking 701876 as yet unmatched pairs. 33711 records in RAM.
INFO 2026-06-08 09:15:46 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:30,684,504
INFO 2026-06-08 09:15:46 MarkDuplicates Tracking 699376 as yet unmatched pairs. 31210 records in RAM.
INFO 2026-06-08 09:15:48 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,463,246
INFO 2026-06-08 09:15:48 MarkDuplicates Tracking 697451 as yet unmatched pairs. 29283 records in RAM.
INFO 2026-06-08 09:15:50 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:31,761,906
INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 695993 as yet unmatched pairs. 27819 records in RAM.
INFO 2026-06-08 09:15:51 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:31,983,357
INFO 2026-06-08 09:15:51 MarkDuplicates Tracking 694786 as yet unmatched pairs. 26603 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:32,443,904
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 694710 as yet unmatched pairs. 26526 records in RAM.
INFO 2026-06-08 09:15:55 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:32,949,652
INFO 2026-06-08 09:15:55 MarkDuplicates Tracking 693786 as yet unmatched pairs. 25599 records in RAM.
INFO 2026-06-08 09:15:57 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:33,296,433
INFO 2026-06-08 09:15:57 MarkDuplicates Tracking 690962 as yet unmatched pairs. 22768 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:34,425,140
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 688908 as yet unmatched pairs. 20691 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:36,970,045
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 690133 as yet unmatched pairs. 21907 records in RAM.
INFO 2026-06-08 09:16:02 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:43,008,728
INFO 2026-06-08 09:16:02 MarkDuplicates Tracking 685921 as yet unmatched pairs. 17685 records in RAM.
INFO 2026-06-08 09:16:03 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:44,147,425
INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 684074 as yet unmatched pairs. 15834 records in RAM.
INFO 2026-06-08 09:16:05 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:53,273,235
INFO 2026-06-08 09:16:05 MarkDuplicates Tracking 683998 as yet unmatched pairs. 15736 records in RAM.
INFO 2026-06-08 09:16:06 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:75,102,596
INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 682273 as yet unmatched pairs. 14001 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:85,505,973
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 680549 as yet unmatched pairs. 12274 records in RAM.
INFO 2026-06-08 09:16:10 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr6:106,511,809
INFO 2026-06-08 09:16:10 MarkDuplicates Tracking 678276 as yet unmatched pairs. 9994 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:113,859,943
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 677073 as yet unmatched pairs. 8778 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:129,393,165
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 675164 as yet unmatched pairs. 6849 records in RAM.
INFO 2026-06-08 09:16:16 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:138,334,368
INFO 2026-06-08 09:16:16 MarkDuplicates Tracking 673897 as yet unmatched pairs. 5569 records in RAM.
INFO 2026-06-08 09:16:18 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:149,566,431
INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 672404 as yet unmatched pairs. 4067 records in RAM.
INFO 2026-06-08 09:16:19 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:158,766,934
INFO 2026-06-08 09:16:19 MarkDuplicates Tracking 671574 as yet unmatched pairs. 3233 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:165,413,670
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 669374 as yet unmatched pairs. 1026 records in RAM.
INFO 2026-06-08 09:16:23 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:1,477,622
INFO 2026-06-08 09:16:23 MarkDuplicates Tracking 668341 as yet unmatched pairs. 40187 records in RAM.
INFO 2026-06-08 09:16:25 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:5,361,709
INFO 2026-06-08 09:16:25 MarkDuplicates Tracking 665578 as yet unmatched pairs. 37411 records in RAM.
INFO 2026-06-08 09:16:26 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,164
INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 670555 as yet unmatched pairs. 42371 records in RAM.
INFO 2026-06-08 09:16:28 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:8,113,954
INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 662708 as yet unmatched pairs. 34521 records in RAM.
INFO 2026-06-08 09:16:29 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:26,196,950
INFO 2026-06-08 09:16:29 MarkDuplicates Tracking 662761 as yet unmatched pairs. 34548 records in RAM.
INFO 2026-06-08 09:16:31 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:38,207,727
INFO 2026-06-08 09:16:31 MarkDuplicates Tracking 659595 as yet unmatched pairs. 31351 records in RAM.
INFO 2026-06-08 09:16:33 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:44,113,105
INFO 2026-06-08 09:16:33 MarkDuplicates Tracking 658965 as yet unmatched pairs. 30714 records in RAM.
INFO 2026-06-08 09:16:35 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr7:51,017,535
INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 656698 as yet unmatched pairs. 28437 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,284
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 655060 as yet unmatched pairs. 26765 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:74,728,818
INFO 2026-06-08 09:16:38 MarkDuplicates Tracking 654345 as yet unmatched pairs. 26043 records in RAM.
INFO 2026-06-08 09:16:40 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,769
INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 658178 as yet unmatched pairs. 29875 records in RAM.
INFO 2026-06-08 09:16:41 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:80,828,647
INFO 2026-06-08 09:16:41 MarkDuplicates Tracking 651402 as yet unmatched pairs. 23097 records in RAM.
INFO 2026-06-08 09:16:44 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr7:92,386,591
INFO 2026-06-08 09:16:44 MarkDuplicates Tracking 650226 as yet unmatched pairs. 21916 records in RAM.
INFO 2026-06-08 09:16:46 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:94,418,497
INFO 2026-06-08 09:16:46 MarkDuplicates Tracking 650951 as yet unmatched pairs. 22634 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:98,931,555
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 647463 as yet unmatched pairs. 19133 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:99,971,827
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 650463 as yet unmatched pairs. 22122 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:100,676,735
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 645064 as yet unmatched pairs. 16713 records in RAM.
INFO 2026-06-08 09:16:52 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:102,483,634
INFO 2026-06-08 09:16:52 MarkDuplicates Tracking 642889 as yet unmatched pairs. 14537 records in RAM.
INFO 2026-06-08 09:16:54 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:106,905,190
INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 641197 as yet unmatched pairs. 12833 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:127,374,933
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 639764 as yet unmatched pairs. 11391 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:128,812,047
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 638196 as yet unmatched pairs. 9814 records in RAM.
INFO 2026-06-08 09:16:58 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:137,915,884
INFO 2026-06-08 09:16:58 MarkDuplicates Tracking 638666 as yet unmatched pairs. 10274 records in RAM.
INFO 2026-06-08 09:17:00 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:141,686,586
INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 635966 as yet unmatched pairs. 7561 records in RAM.
INFO 2026-06-08 09:17:01 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:143,382,836
INFO 2026-06-08 09:17:01 MarkDuplicates Tracking 635221 as yet unmatched pairs. 6810 records in RAM.
INFO 2026-06-08 09:17:03 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:149,210,504
INFO 2026-06-08 09:17:03 MarkDuplicates Tracking 632488 as yet unmatched pairs. 4076 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr7:151,116,820
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 630993 as yet unmatched pairs. 2578 records in RAM.
INFO 2026-06-08 09:17:08 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr7:156,756,401
INFO 2026-06-08 09:17:08 MarkDuplicates Tracking 629434 as yet unmatched pairs. 1004 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,669
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 638669 as yet unmatched pairs. 60760 records in RAM.
INFO 2026-06-08 09:17:11 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr8:20,252,902
INFO 2026-06-08 09:17:11 MarkDuplicates Tracking 626055 as yet unmatched pairs. 48142 records in RAM.
INFO 2026-06-08 09:17:13 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr8:27,439,392
INFO 2026-06-08 09:17:13 MarkDuplicates Tracking 624558 as yet unmatched pairs. 46611 records in RAM.
INFO 2026-06-08 09:17:15 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr8:37,877,458
INFO 2026-06-08 09:17:15 MarkDuplicates Tracking 623235 as yet unmatched pairs. 45262 records in RAM.
INFO 2026-06-08 09:17:16 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr8:41,530,221
INFO 2026-06-08 09:17:16 MarkDuplicates Tracking 621298 as yet unmatched pairs. 43308 records in RAM.
INFO 2026-06-08 09:17:18 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr8:47,778,505
INFO 2026-06-08 09:17:18 MarkDuplicates Tracking 620659 as yet unmatched pairs. 42663 records in RAM.
INFO 2026-06-08 09:17:20 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr8:54,065,803
INFO 2026-06-08 09:17:20 MarkDuplicates Tracking 619487 as yet unmatched pairs. 41480 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr8:63,186,152
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 618373 as yet unmatched pairs. 40354 records in RAM.
INFO 2026-06-08 09:17:23 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr8:70,148,290
INFO 2026-06-08 09:17:23 MarkDuplicates Tracking 617287 as yet unmatched pairs. 39261 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr8:81,703,017
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 614589 as yet unmatched pairs. 36554 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr8:94,678,004
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 612941 as yet unmatched pairs. 34901 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr8:99,156,604
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 613554 as yet unmatched pairs. 35503 records in RAM.
INFO 2026-06-08 09:17:30 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr8:100,712,778
INFO 2026-06-08 09:17:30 MarkDuplicates Tracking 614750 as yet unmatched pairs. 36692 records in RAM.
INFO 2026-06-08 09:17:31 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr8:102,650,131
INFO 2026-06-08 09:17:31 MarkDuplicates Tracking 608658 as yet unmatched pairs. 30598 records in RAM.
INFO 2026-06-08 09:17:33 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr8:116,646,523
INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 608047 as yet unmatched pairs. 29967 records in RAM.
INFO 2026-06-08 09:17:35 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr8:124,486,145
INFO 2026-06-08 09:17:35 MarkDuplicates Tracking 606138 as yet unmatched pairs. 28050 records in RAM.
INFO 2026-06-08 09:17:37 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr8:133,408,244
INFO 2026-06-08 09:17:37 MarkDuplicates Tracking 604025 as yet unmatched pairs. 25924 records in RAM.
INFO 2026-06-08 09:18:41 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 64s. Last read position: chr8:143,438,028
INFO 2026-06-08 09:18:41 MarkDuplicates Tracking 602601 as yet unmatched pairs. 24480 records in RAM.
INFO 2026-06-08 09:18:43 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr8:143,735,850
INFO 2026-06-08 09:18:43 MarkDuplicates Tracking 600612 as yet unmatched pairs. 22478 records in RAM.
INFO 2026-06-08 09:18:44 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,313
INFO 2026-06-08 09:18:44 MarkDuplicates Tracking 599543 as yet unmatched pairs. 21405 records in RAM.
INFO 2026-06-08 09:18:46 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,975
INFO 2026-06-08 09:18:46 MarkDuplicates Tracking 608562 as yet unmatched pairs. 30424 records in RAM.
INFO 2026-06-08 09:18:47 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,853
INFO 2026-06-08 09:18:47 MarkDuplicates Tracking 603019 as yet unmatched pairs. 24881 records in RAM.
INFO 2026-06-08 09:18:48 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,570
INFO 2026-06-08 09:18:48 MarkDuplicates Tracking 604837 as yet unmatched pairs. 26699 records in RAM.
INFO 2026-06-08 09:18:49 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,214
INFO 2026-06-08 09:18:49 MarkDuplicates Tracking 599040 as yet unmatched pairs. 20901 records in RAM.
INFO 2026-06-08 09:18:50 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,712
INFO 2026-06-08 09:18:50 MarkDuplicates Tracking 601672 as yet unmatched pairs. 23533 records in RAM.
INFO 2026-06-08 09:18:51 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,323
INFO 2026-06-08 09:18:51 MarkDuplicates Tracking 601316 as yet unmatched pairs. 23177 records in RAM.
INFO 2026-06-08 09:18:52 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,998
INFO 2026-06-08 09:18:52 MarkDuplicates Tracking 609110 as yet unmatched pairs. 30968 records in RAM.
INFO 2026-06-08 09:18:54 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,625
INFO 2026-06-08 09:18:54 MarkDuplicates Tracking 602727 as yet unmatched pairs. 24584 records in RAM.
INFO 2026-06-08 09:18:55 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,400
INFO 2026-06-08 09:18:55 MarkDuplicates Tracking 592280 as yet unmatched pairs. 14137 records in RAM.
INFO 2026-06-08 09:18:56 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,058
INFO 2026-06-08 09:18:56 MarkDuplicates Tracking 594454 as yet unmatched pairs. 16311 records in RAM.
INFO 2026-06-08 09:18:57 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,820
INFO 2026-06-08 09:18:57 MarkDuplicates Tracking 590894 as yet unmatched pairs. 12751 records in RAM.
INFO 2026-06-08 09:18:58 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,371
INFO 2026-06-08 09:18:58 MarkDuplicates Tracking 591729 as yet unmatched pairs. 13586 records in RAM.
INFO 2026-06-08 09:18:59 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,871,164
INFO 2026-06-08 09:18:59 MarkDuplicates Tracking 591860 as yet unmatched pairs. 13714 records in RAM.
INFO 2026-06-08 09:19:01 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,271
INFO 2026-06-08 09:19:01 MarkDuplicates Tracking 592565 as yet unmatched pairs. 14415 records in RAM.
INFO 2026-06-08 09:19:02 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,982,973
INFO 2026-06-08 09:19:02 MarkDuplicates Tracking 586250 as yet unmatched pairs. 8098 records in RAM.
INFO 2026-06-08 09:19:05 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 2s. Last read position: chr8:144,260,699
INFO 2026-06-08 09:19:05 MarkDuplicates Tracking 583121 as yet unmatched pairs. 4969 records in RAM.
INFO 2026-06-08 09:19:06 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:144,440,968
INFO 2026-06-08 09:19:06 MarkDuplicates Tracking 581095 as yet unmatched pairs. 2943 records in RAM.
INFO 2026-06-08 09:19:08 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr8:144,808,303
INFO 2026-06-08 09:19:08 MarkDuplicates Tracking 578716 as yet unmatched pairs. 542 records in RAM.
INFO 2026-06-08 09:19:10 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr9:7,477,175
INFO 2026-06-08 09:19:10 MarkDuplicates Tracking 576999 as yet unmatched pairs. 28861 records in RAM.
INFO 2026-06-08 09:19:12 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:32,542,983
INFO 2026-06-08 09:19:12 MarkDuplicates Tracking 575869 as yet unmatched pairs. 27702 records in RAM.
INFO 2026-06-08 09:19:14 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr9:35,105,765
INFO 2026-06-08 09:19:14 MarkDuplicates Tracking 574218 as yet unmatched pairs. 26035 records in RAM.
INFO 2026-06-08 09:19:15 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr9:39,816,837
INFO 2026-06-08 09:19:15 MarkDuplicates Tracking 572435 as yet unmatched pairs. 24244 records in RAM.
INFO 2026-06-08 09:19:17 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:83,970,306
INFO 2026-06-08 09:19:17 MarkDuplicates Tracking 572225 as yet unmatched pairs. 24004 records in RAM.
INFO 2026-06-08 09:19:18 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:92,496,423
INFO 2026-06-08 09:19:18 MarkDuplicates Tracking 570072 as yet unmatched pairs. 21844 records in RAM.
INFO 2026-06-08 09:19:20 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:98,985,724
INFO 2026-06-08 09:19:20 MarkDuplicates Tracking 568864 as yet unmatched pairs. 20626 records in RAM.
INFO 2026-06-08 09:19:21 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:110,251,387
INFO 2026-06-08 09:19:21 MarkDuplicates Tracking 567907 as yet unmatched pairs. 19665 records in RAM.
INFO 2026-06-08 09:19:23 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:114,377,185
INFO 2026-06-08 09:19:23 MarkDuplicates Tracking 566891 as yet unmatched pairs. 18644 records in RAM.
INFO 2026-06-08 09:19:25 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:121,353,220
INFO 2026-06-08 09:19:25 MarkDuplicates Tracking 565343 as yet unmatched pairs. 17092 records in RAM.
INFO 2026-06-08 09:19:26 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:126,833,314
INFO 2026-06-08 09:19:26 MarkDuplicates Tracking 562316 as yet unmatched pairs. 14051 records in RAM.
INFO 2026-06-08 09:19:28 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:128,273,916
INFO 2026-06-08 09:19:28 MarkDuplicates Tracking 560497 as yet unmatched pairs. 12225 records in RAM.
INFO 2026-06-08 09:19:29 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:129,014,462
INFO 2026-06-08 09:19:29 MarkDuplicates Tracking 559456 as yet unmatched pairs. 11167 records in RAM.
INFO 2026-06-08 09:19:31 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:130,884,980
INFO 2026-06-08 09:19:31 MarkDuplicates Tracking 558215 as yet unmatched pairs. 9918 records in RAM.
INFO 2026-06-08 09:19:33 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:132,905,688
INFO 2026-06-08 09:19:33 MarkDuplicates Tracking 556136 as yet unmatched pairs. 7834 records in RAM.
INFO 2026-06-08 09:19:34 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:134,782,694
INFO 2026-06-08 09:19:34 MarkDuplicates Tracking 554404 as yet unmatched pairs. 6092 records in RAM.
INFO 2026-06-08 09:19:35 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,971
INFO 2026-06-08 09:19:35 MarkDuplicates Tracking 554057 as yet unmatched pairs. 5743 records in RAM.
INFO 2026-06-08 09:19:37 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:137,045,912
INFO 2026-06-08 09:19:37 MarkDuplicates Tracking 550785 as yet unmatched pairs. 2471 records in RAM.
INFO 2026-06-08 09:19:39 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:137,754,167
INFO 2026-06-08 09:19:39 MarkDuplicates Tracking 548760 as yet unmatched pairs. 439 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:5,001,589
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 550806 as yet unmatched pairs. 27688 records in RAM.
INFO 2026-06-08 09:19:42 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:13,188,890
INFO 2026-06-08 09:19:42 MarkDuplicates Tracking 545627 as yet unmatched pairs. 22506 records in RAM.
INFO 2026-06-08 09:19:44 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr10:24,585,431
INFO 2026-06-08 09:19:44 MarkDuplicates Tracking 544756 as yet unmatched pairs. 21626 records in RAM.
INFO 2026-06-08 09:19:46 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr10:32,035,600
INFO 2026-06-08 09:19:46 MarkDuplicates Tracking 545745 as yet unmatched pairs. 22606 records in RAM.
INFO 2026-06-08 09:19:47 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr10:37,193,237
INFO 2026-06-08 09:19:47 MarkDuplicates Tracking 549088 as yet unmatched pairs. 25945 records in RAM.
INFO 2026-06-08 09:19:49 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,753
INFO 2026-06-08 09:19:49 MarkDuplicates Tracking 542486 as yet unmatched pairs. 19329 records in RAM.
INFO 2026-06-08 09:19:51 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr10:56,358,437
INFO 2026-06-08 09:19:51 MarkDuplicates Tracking 539998 as yet unmatched pairs. 16835 records in RAM.
INFO 2026-06-08 09:19:52 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:68,791,220
INFO 2026-06-08 09:19:52 MarkDuplicates Tracking 538477 as yet unmatched pairs. 15300 records in RAM.
INFO 2026-06-08 09:19:54 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr10:73,246,698
INFO 2026-06-08 09:19:54 MarkDuplicates Tracking 536657 as yet unmatched pairs. 13470 records in RAM.
INFO 2026-06-08 09:19:56 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:75,030,965
INFO 2026-06-08 09:19:56 MarkDuplicates Tracking 535320 as yet unmatched pairs. 12130 records in RAM.
INFO 2026-06-08 09:19:57 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:84,438,693
INFO 2026-06-08 09:19:57 MarkDuplicates Tracking 533880 as yet unmatched pairs. 10677 records in RAM.
INFO 2026-06-08 09:19:59 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:89,403,141
INFO 2026-06-08 09:19:59 MarkDuplicates Tracking 533256 as yet unmatched pairs. 10053 records in RAM.
INFO 2026-06-08 09:20:00 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:96,156,765
INFO 2026-06-08 09:20:00 MarkDuplicates Tracking 531332 as yet unmatched pairs. 8123 records in RAM.
INFO 2026-06-08 09:20:02 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:100,347,436
INFO 2026-06-08 09:20:02 MarkDuplicates Tracking 529837 as yet unmatched pairs. 6617 records in RAM.
INFO 2026-06-08 09:20:04 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:102,381,238
INFO 2026-06-08 09:20:04 MarkDuplicates Tracking 528492 as yet unmatched pairs. 5261 records in RAM.
INFO 2026-06-08 09:20:05 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:112,432,403
INFO 2026-06-08 09:20:05 MarkDuplicates Tracking 526381 as yet unmatched pairs. 3142 records in RAM.
INFO 2026-06-08 09:20:07 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:122,506,811
INFO 2026-06-08 09:20:07 MarkDuplicates Tracking 525028 as yet unmatched pairs. 1780 records in RAM.
INFO 2026-06-08 09:20:09 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr11:239,049
INFO 2026-06-08 09:20:09 MarkDuplicates Tracking 524560 as yet unmatched pairs. 53951 records in RAM.
INFO 2026-06-08 09:20:10 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr11:562,299
INFO 2026-06-08 09:20:10 MarkDuplicates Tracking 521844 as yet unmatched pairs. 51230 records in RAM.
INFO 2026-06-08 09:20:12 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr11:884,106
INFO 2026-06-08 09:20:12 MarkDuplicates Tracking 520700 as yet unmatched pairs. 50078 records in RAM.
INFO 2026-06-08 09:20:13 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:1,880,133
INFO 2026-06-08 09:20:13 MarkDuplicates Tracking 517839 as yet unmatched pairs. 47211 records in RAM.
INFO 2026-06-08 09:20:15 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:5,755,404
INFO 2026-06-08 09:20:15 MarkDuplicates Tracking 515862 as yet unmatched pairs. 45226 records in RAM.
INFO 2026-06-08 09:20:17 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:8,948,416
INFO 2026-06-08 09:20:17 MarkDuplicates Tracking 514395 as yet unmatched pairs. 43756 records in RAM.
INFO 2026-06-08 09:20:18 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:12,674,786
INFO 2026-06-08 09:20:18 MarkDuplicates Tracking 512677 as yet unmatched pairs. 42031 records in RAM.
INFO 2026-06-08 09:20:20 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr11:20,491,854
INFO 2026-06-08 09:20:20 MarkDuplicates Tracking 511332 as yet unmatched pairs. 40683 records in RAM.
INFO 2026-06-08 09:20:21 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr11:36,489,812
INFO 2026-06-08 09:20:21 MarkDuplicates Tracking 510099 as yet unmatched pairs. 39440 records in RAM.
INFO 2026-06-08 09:20:23 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr11:46,758,937
INFO 2026-06-08 09:20:23 MarkDuplicates Tracking 508651 as yet unmatched pairs. 37982 records in RAM.
INFO 2026-06-08 09:20:25 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:57,309,187
INFO 2026-06-08 09:20:25 MarkDuplicates Tracking 508332 as yet unmatched pairs. 37662 records in RAM.
INFO 2026-06-08 09:20:26 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:58,834,626
INFO 2026-06-08 09:20:26 MarkDuplicates Tracking 511846 as yet unmatched pairs. 41175 records in RAM.
INFO 2026-06-08 09:20:28 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:60,928,753
INFO 2026-06-08 09:20:28 MarkDuplicates Tracking 504896 as yet unmatched pairs. 34224 records in RAM.
INFO 2026-06-08 09:20:30 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:61,967,369
INFO 2026-06-08 09:20:30 MarkDuplicates Tracking 503688 as yet unmatched pairs. 33015 records in RAM.
INFO 2026-06-08 09:20:31 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:62,526,902
INFO 2026-06-08 09:20:31 MarkDuplicates Tracking 503067 as yet unmatched pairs. 32394 records in RAM.
INFO 2026-06-08 09:20:33 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:62,581,567
INFO 2026-06-08 09:20:33 MarkDuplicates Tracking 500048 as yet unmatched pairs. 29369 records in RAM.
INFO 2026-06-08 09:20:34 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:63,544,772
INFO 2026-06-08 09:20:34 MarkDuplicates Tracking 499062 as yet unmatched pairs. 28383 records in RAM.
INFO 2026-06-08 09:20:36 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:64,320,769
INFO 2026-06-08 09:20:36 MarkDuplicates Tracking 497655 as yet unmatched pairs. 26972 records in RAM.
INFO 2026-06-08 09:20:38 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:65,128,367
INFO 2026-06-08 09:20:38 MarkDuplicates Tracking 495050 as yet unmatched pairs. 24367 records in RAM.
INFO 2026-06-08 09:20:39 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,323
INFO 2026-06-08 09:20:39 MarkDuplicates Tracking 493069 as yet unmatched pairs. 22349 records in RAM.
INFO 2026-06-08 09:20:41 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:66,436,001
INFO 2026-06-08 09:20:41 MarkDuplicates Tracking 491095 as yet unmatched pairs. 20361 records in RAM.
INFO 2026-06-08 09:20:42 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:67,400,700
INFO 2026-06-08 09:20:42 MarkDuplicates Tracking 489567 as yet unmatched pairs. 18829 records in RAM.
INFO 2026-06-08 09:20:44 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:68,047,432
INFO 2026-06-08 09:20:44 MarkDuplicates Tracking 487517 as yet unmatched pairs. 16775 records in RAM.
INFO 2026-06-08 09:20:46 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:71,498,519
INFO 2026-06-08 09:20:46 MarkDuplicates Tracking 485753 as yet unmatched pairs. 14999 records in RAM.
INFO 2026-06-08 09:20:47 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:73,234,614
INFO 2026-06-08 09:20:47 MarkDuplicates Tracking 484064 as yet unmatched pairs. 13310 records in RAM.
INFO 2026-06-08 09:20:49 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:76,115,958
INFO 2026-06-08 09:20:49 MarkDuplicates Tracking 482348 as yet unmatched pairs. 11586 records in RAM.
INFO 2026-06-08 09:20:51 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:86,808,642
INFO 2026-06-08 09:20:51 MarkDuplicates Tracking 481767 as yet unmatched pairs. 10989 records in RAM.
INFO 2026-06-08 09:20:52 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:103,154,594
INFO 2026-06-08 09:20:52 MarkDuplicates Tracking 479412 as yet unmatched pairs. 8621 records in RAM.
INFO 2026-06-08 09:20:54 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:114,064,051
INFO 2026-06-08 09:20:54 MarkDuplicates Tracking 478941 as yet unmatched pairs. 8141 records in RAM.
INFO 2026-06-08 09:20:56 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:118,474,303
INFO 2026-06-08 09:20:56 MarkDuplicates Tracking 477140 as yet unmatched pairs. 6329 records in RAM.
INFO 2026-06-08 09:20:58 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:119,055,492
INFO 2026-06-08 09:20:58 MarkDuplicates Tracking 476461 as yet unmatched pairs. 5645 records in RAM.
INFO 2026-06-08 09:20:59 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,563
INFO 2026-06-08 09:20:59 MarkDuplicates Tracking 477729 as yet unmatched pairs. 6911 records in RAM.
INFO 2026-06-08 09:21:01 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:128,969,154
INFO 2026-06-08 09:21:01 MarkDuplicates Tracking 472632 as yet unmatched pairs. 1812 records in RAM.
INFO 2026-06-08 09:21:03 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr12:293,035
INFO 2026-06-08 09:21:03 MarkDuplicates Tracking 471023 as yet unmatched pairs. 46668 records in RAM.
INFO 2026-06-08 09:21:05 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:4,541,906
INFO 2026-06-08 09:21:05 MarkDuplicates Tracking 469428 as yet unmatched pairs. 45070 records in RAM.
INFO 2026-06-08 09:21:06 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr12:6,598,063
INFO 2026-06-08 09:21:06 MarkDuplicates Tracking 469277 as yet unmatched pairs. 44910 records in RAM.
INFO 2026-06-08 09:21:08 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr12:7,070,194
INFO 2026-06-08 09:21:08 MarkDuplicates Tracking 467440 as yet unmatched pairs. 43064 records in RAM.
INFO 2026-06-08 09:21:09 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr12:9,418,605
INFO 2026-06-08 09:21:09 MarkDuplicates Tracking 464797 as yet unmatched pairs. 40419 records in RAM.
INFO 2026-06-08 09:21:11 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:14,774,626
INFO 2026-06-08 09:21:11 MarkDuplicates Tracking 463989 as yet unmatched pairs. 39600 records in RAM.
INFO 2026-06-08 09:21:12 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr12:27,650,036
INFO 2026-06-08 09:21:12 MarkDuplicates Tracking 462253 as yet unmatched pairs. 37857 records in RAM.
INFO 2026-06-08 09:21:14 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr12:45,730,073
INFO 2026-06-08 09:21:14 MarkDuplicates Tracking 461075 as yet unmatched pairs. 36675 records in RAM.
INFO 2026-06-08 09:21:16 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:48,824,684
INFO 2026-06-08 09:21:16 MarkDuplicates Tracking 459299 as yet unmatched pairs. 34894 records in RAM.
INFO 2026-06-08 09:21:17 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr12:49,185,157
INFO 2026-06-08 09:21:17 MarkDuplicates Tracking 458397 as yet unmatched pairs. 33992 records in RAM.
INFO 2026-06-08 09:21:19 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr12:50,925,298
INFO 2026-06-08 09:21:19 MarkDuplicates Tracking 456380 as yet unmatched pairs. 31959 records in RAM.
INFO 2026-06-08 09:21:21 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:52,520,110
INFO 2026-06-08 09:21:21 MarkDuplicates Tracking 454387 as yet unmatched pairs. 29955 records in RAM.
INFO 2026-06-08 09:21:22 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:53,461,021
INFO 2026-06-08 09:21:22 MarkDuplicates Tracking 455995 as yet unmatched pairs. 31559 records in RAM.
INFO 2026-06-08 09:21:23 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:54,542,580
INFO 2026-06-08 09:21:23 MarkDuplicates Tracking 451692 as yet unmatched pairs. 27255 records in RAM.
INFO 2026-06-08 09:21:25 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:54,856,877
INFO 2026-06-08 09:21:25 MarkDuplicates Tracking 526992 as yet unmatched pairs. 102554 records in RAM.
INFO 2026-06-08 09:21:27 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr12:56,131,315
INFO 2026-06-08 09:21:27 MarkDuplicates Tracking 449365 as yet unmatched pairs. 24915 records in RAM.
INFO 2026-06-08 09:21:29 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:56,604,599
INFO 2026-06-08 09:21:29 MarkDuplicates Tracking 447553 as yet unmatched pairs. 23101 records in RAM.
INFO 2026-06-08 09:21:30 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:57,156,169
INFO 2026-06-08 09:21:30 MarkDuplicates Tracking 446828 as yet unmatched pairs. 22373 records in RAM.
INFO 2026-06-08 09:21:32 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:57,516,714
INFO 2026-06-08 09:21:32 MarkDuplicates Tracking 444818 as yet unmatched pairs. 20361 records in RAM.
INFO 2026-06-08 09:21:34 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:64,126,065
INFO 2026-06-08 09:21:34 MarkDuplicates Tracking 442991 as yet unmatched pairs. 18530 records in RAM.
INFO 2026-06-08 09:21:35 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:70,278,256
INFO 2026-06-08 09:21:35 MarkDuplicates Tracking 441709 as yet unmatched pairs. 17248 records in RAM.
INFO 2026-06-08 09:21:37 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:91,108,888
INFO 2026-06-08 09:21:37 MarkDuplicates Tracking 442391 as yet unmatched pairs. 17924 records in RAM.
INFO 2026-06-08 09:21:38 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:98,644,523
INFO 2026-06-08 09:21:38 MarkDuplicates Tracking 439033 as yet unmatched pairs. 14565 records in RAM.
INFO 2026-06-08 09:21:40 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,635
INFO 2026-06-08 09:21:40 MarkDuplicates Tracking 438175 as yet unmatched pairs. 13697 records in RAM.
INFO 2026-06-08 09:21:41 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:109,591,261
INFO 2026-06-08 09:21:41 MarkDuplicates Tracking 436041 as yet unmatched pairs. 11559 records in RAM.
INFO 2026-06-08 09:21:43 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:112,179,346
INFO 2026-06-08 09:21:43 MarkDuplicates Tracking 434497 as yet unmatched pairs. 10009 records in RAM.
INFO 2026-06-08 09:21:45 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:113,266,325
INFO 2026-06-08 09:21:45 MarkDuplicates Tracking 432801 as yet unmatched pairs. 8301 records in RAM.
INFO 2026-06-08 09:21:47 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr12:120,196,784
INFO 2026-06-08 09:21:47 MarkDuplicates Tracking 432794 as yet unmatched pairs. 8285 records in RAM.
INFO 2026-06-08 09:21:48 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:121,830,067
INFO 2026-06-08 09:21:48 MarkDuplicates Tracking 429552 as yet unmatched pairs. 5041 records in RAM.
INFO 2026-06-08 09:21:50 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:123,748,616
INFO 2026-06-08 09:21:50 MarkDuplicates Tracking 428159 as yet unmatched pairs. 3636 records in RAM.
INFO 2026-06-08 09:21:52 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:131,986,608
INFO 2026-06-08 09:21:52 MarkDuplicates Tracking 426730 as yet unmatched pairs. 2194 records in RAM.
INFO 2026-06-08 09:21:53 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:133,120,991
INFO 2026-06-08 09:21:53 MarkDuplicates Tracking 424655 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 09:21:55 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr13:24,905,512
INFO 2026-06-08 09:21:55 MarkDuplicates Tracking 423303 as yet unmatched pairs. 10875 records in RAM.
INFO 2026-06-08 09:21:57 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr13:33,129,983
INFO 2026-06-08 09:21:57 MarkDuplicates Tracking 422002 as yet unmatched pairs. 9561 records in RAM.
INFO 2026-06-08 09:21:59 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr13:42,917,593
INFO 2026-06-08 09:21:59 MarkDuplicates Tracking 420943 as yet unmatched pairs. 8491 records in RAM.
INFO 2026-06-08 09:22:00 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr13:48,411,960
INFO 2026-06-08 09:22:00 MarkDuplicates Tracking 419944 as yet unmatched pairs. 7484 records in RAM.
INFO 2026-06-08 09:22:02 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr13:77,055,645
INFO 2026-06-08 09:22:02 MarkDuplicates Tracking 418161 as yet unmatched pairs. 5692 records in RAM.
INFO 2026-06-08 09:22:03 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr13:99,501,637
INFO 2026-06-08 09:22:03 MarkDuplicates Tracking 419128 as yet unmatched pairs. 6654 records in RAM.
INFO 2026-06-08 09:22:05 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr13:110,434,425
INFO 2026-06-08 09:22:05 MarkDuplicates Tracking 414833 as yet unmatched pairs. 2354 records in RAM.
INFO 2026-06-08 09:22:06 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr13:114,021,430
INFO 2026-06-08 09:22:06 MarkDuplicates Tracking 413060 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 09:22:08 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr14:21,498,238
INFO 2026-06-08 09:22:08 MarkDuplicates Tracking 411333 as yet unmatched pairs. 32431 records in RAM.
INFO 2026-06-08 09:22:10 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr14:23,347,534
INFO 2026-06-08 09:22:10 MarkDuplicates Tracking 409894 as yet unmatched pairs. 30989 records in RAM.
INFO 2026-06-08 09:22:11 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr14:24,296,534
INFO 2026-06-08 09:22:11 MarkDuplicates Tracking 408334 as yet unmatched pairs. 29420 records in RAM.
INFO 2026-06-08 09:22:13 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr14:34,999,616
INFO 2026-06-08 09:22:13 MarkDuplicates Tracking 407414 as yet unmatched pairs. 28496 records in RAM.
INFO 2026-06-08 09:22:14 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,715
INFO 2026-06-08 09:22:14 MarkDuplicates Tracking 406064 as yet unmatched pairs. 27128 records in RAM.
INFO 2026-06-08 09:22:16 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr14:54,737,024
INFO 2026-06-08 09:22:16 MarkDuplicates Tracking 403817 as yet unmatched pairs. 24860 records in RAM.
INFO 2026-06-08 09:22:18 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr14:61,767,291
INFO 2026-06-08 09:22:18 MarkDuplicates Tracking 402264 as yet unmatched pairs. 23303 records in RAM.
INFO 2026-06-08 09:22:19 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr14:66,924,288
INFO 2026-06-08 09:22:19 MarkDuplicates Tracking 400902 as yet unmatched pairs. 21934 records in RAM.
INFO 2026-06-08 09:22:21 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr14:70,595,533
INFO 2026-06-08 09:22:21 MarkDuplicates Tracking 399388 as yet unmatched pairs. 20415 records in RAM.
INFO 2026-06-08 09:22:22 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr14:74,676,652
INFO 2026-06-08 09:22:22 MarkDuplicates Tracking 397738 as yet unmatched pairs. 18763 records in RAM.
INFO 2026-06-08 09:22:24 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr14:80,792,801
INFO 2026-06-08 09:22:24 MarkDuplicates Tracking 396138 as yet unmatched pairs. 17153 records in RAM.
INFO 2026-06-08 09:22:26 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr14:92,117,510
INFO 2026-06-08 09:22:26 MarkDuplicates Tracking 395954 as yet unmatched pairs. 16961 records in RAM.
INFO 2026-06-08 09:22:28 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr14:96,532,622
INFO 2026-06-08 09:22:28 MarkDuplicates Tracking 393558 as yet unmatched pairs. 14565 records in RAM.
INFO 2026-06-08 09:22:29 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr14:102,017,141
INFO 2026-06-08 09:22:29 MarkDuplicates Tracking 392017 as yet unmatched pairs. 13020 records in RAM.
INFO 2026-06-08 09:22:31 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr14:103,338,435
INFO 2026-06-08 09:22:31 MarkDuplicates Tracking 389843 as yet unmatched pairs. 10845 records in RAM.
INFO 2026-06-08 09:22:33 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr14:105,173,080
INFO 2026-06-08 09:22:33 MarkDuplicates Tracking 388251 as yet unmatched pairs. 9251 records in RAM.
INFO 2026-06-08 09:22:34 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,212
INFO 2026-06-08 09:22:34 MarkDuplicates Tracking 391436 as yet unmatched pairs. 12435 records in RAM.
INFO 2026-06-08 09:22:36 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr14:105,668,540
INFO 2026-06-08 09:22:36 MarkDuplicates Tracking 392191 as yet unmatched pairs. 13185 records in RAM.
INFO 2026-06-08 09:22:37 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,512
INFO 2026-06-08 09:22:37 MarkDuplicates Tracking 440925 as yet unmatched pairs. 61919 records in RAM.
INFO 2026-06-08 09:22:39 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,763
INFO 2026-06-08 09:22:39 MarkDuplicates Tracking 414084 as yet unmatched pairs. 35077 records in RAM.
INFO 2026-06-08 09:22:40 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,164
INFO 2026-06-08 09:22:40 MarkDuplicates Tracking 408769 as yet unmatched pairs. 29761 records in RAM.
INFO 2026-06-08 09:22:42 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,953
INFO 2026-06-08 09:22:42 MarkDuplicates Tracking 403578 as yet unmatched pairs. 24568 records in RAM.
INFO 2026-06-08 09:22:43 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr14:105,771,379
INFO 2026-06-08 09:22:43 MarkDuplicates Tracking 381707 as yet unmatched pairs. 2697 records in RAM.
INFO 2026-06-08 09:22:45 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,178
INFO 2026-06-08 09:22:45 MarkDuplicates Tracking 391040 as yet unmatched pairs. 12030 records in RAM.
INFO 2026-06-08 09:22:47 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr15:22,851,844
INFO 2026-06-08 09:22:47 MarkDuplicates Tracking 379237 as yet unmatched pairs. 25848 records in RAM.
INFO 2026-06-08 09:22:48 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr15:32,732,545
INFO 2026-06-08 09:22:48 MarkDuplicates Tracking 377798 as yet unmatched pairs. 24405 records in RAM.
INFO 2026-06-08 09:22:50 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr15:40,091,872
INFO 2026-06-08 09:22:50 MarkDuplicates Tracking 376617 as yet unmatched pairs. 23213 records in RAM.
INFO 2026-06-08 09:22:51 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr15:41,754,460
INFO 2026-06-08 09:22:51 MarkDuplicates Tracking 375819 as yet unmatched pairs. 22407 records in RAM.
INFO 2026-06-08 09:22:53 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr15:43,574,318
INFO 2026-06-08 09:22:53 MarkDuplicates Tracking 373440 as yet unmatched pairs. 20025 records in RAM.
INFO 2026-06-08 09:22:54 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr15:44,716,332
INFO 2026-06-08 09:22:54 MarkDuplicates Tracking 379703 as yet unmatched pairs. 26280 records in RAM.
INFO 2026-06-08 09:22:56 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr15:50,628,218
INFO 2026-06-08 09:22:56 MarkDuplicates Tracking 370954 as yet unmatched pairs. 17527 records in RAM.
INFO 2026-06-08 09:22:57 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr15:57,234,098
INFO 2026-06-08 09:22:57 MarkDuplicates Tracking 370949 as yet unmatched pairs. 17521 records in RAM.
INFO 2026-06-08 09:22:59 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr15:63,042,838
INFO 2026-06-08 09:22:59 MarkDuplicates Tracking 369649 as yet unmatched pairs. 16216 records in RAM.
INFO 2026-06-08 09:23:00 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr15:64,963,726
INFO 2026-06-08 09:23:00 MarkDuplicates Tracking 367243 as yet unmatched pairs. 13807 records in RAM.
INFO 2026-06-08 09:23:02 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr15:68,339,579
INFO 2026-06-08 09:23:02 MarkDuplicates Tracking 365074 as yet unmatched pairs. 11638 records in RAM.
INFO 2026-06-08 09:23:04 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr15:73,301,368
INFO 2026-06-08 09:23:04 MarkDuplicates Tracking 363667 as yet unmatched pairs. 10228 records in RAM.
INFO 2026-06-08 09:23:05 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr15:75,207,420
INFO 2026-06-08 09:23:05 MarkDuplicates Tracking 362382 as yet unmatched pairs. 8943 records in RAM.
INFO 2026-06-08 09:23:07 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr15:78,545,728
INFO 2026-06-08 09:23:07 MarkDuplicates Tracking 360744 as yet unmatched pairs. 7299 records in RAM.
INFO 2026-06-08 09:23:09 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr15:84,653,642
INFO 2026-06-08 09:23:09 MarkDuplicates Tracking 358715 as yet unmatched pairs. 5270 records in RAM.
INFO 2026-06-08 09:23:11 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr15:89,647,685
INFO 2026-06-08 09:23:11 MarkDuplicates Tracking 357118 as yet unmatched pairs. 3661 records in RAM.
INFO 2026-06-08 09:23:13 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr15:90,878,925
INFO 2026-06-08 09:23:13 MarkDuplicates Tracking 356236 as yet unmatched pairs. 2779 records in RAM.
INFO 2026-06-08 09:23:14 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr15:101,065,984
INFO 2026-06-08 09:23:14 MarkDuplicates Tracking 354078 as yet unmatched pairs. 618 records in RAM.
INFO 2026-06-08 09:23:16 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr16:672,815
INFO 2026-06-08 09:23:16 MarkDuplicates Tracking 353081 as yet unmatched pairs. 47688 records in RAM.
INFO 2026-06-08 09:23:18 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr16:1,762,841
INFO 2026-06-08 09:23:18 MarkDuplicates Tracking 350562 as yet unmatched pairs. 45154 records in RAM.
INFO 2026-06-08 09:23:19 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,109,128
INFO 2026-06-08 09:23:19 MarkDuplicates Tracking 348600 as yet unmatched pairs. 43192 records in RAM.
INFO 2026-06-08 09:23:21 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr16:2,759,364
INFO 2026-06-08 09:23:21 MarkDuplicates Tracking 347507 as yet unmatched pairs. 42098 records in RAM.
INFO 2026-06-08 09:23:22 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:2,772,028
INFO 2026-06-08 09:23:22 MarkDuplicates Tracking 348413 as yet unmatched pairs. 42999 records in RAM.
INFO 2026-06-08 09:23:24 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr16:4,337,410
INFO 2026-06-08 09:23:24 MarkDuplicates Tracking 343043 as yet unmatched pairs. 37625 records in RAM.
INFO 2026-06-08 09:23:26 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr16:10,907,428
INFO 2026-06-08 09:23:26 MarkDuplicates Tracking 342104 as yet unmatched pairs. 36685 records in RAM.
INFO 2026-06-08 09:23:27 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:14,868,573
INFO 2026-06-08 09:23:27 MarkDuplicates Tracking 340478 as yet unmatched pairs. 35058 records in RAM.
INFO 2026-06-08 09:23:29 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:15,380,830
INFO 2026-06-08 09:23:29 MarkDuplicates Tracking 338857 as yet unmatched pairs. 33436 records in RAM.
INFO 2026-06-08 09:23:30 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:16,350,459
INFO 2026-06-08 09:23:30 MarkDuplicates Tracking 338959 as yet unmatched pairs. 33538 records in RAM.
INFO 2026-06-08 09:23:31 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr16:18,385,563
INFO 2026-06-08 09:23:31 MarkDuplicates Tracking 338237 as yet unmatched pairs. 32816 records in RAM.
INFO 2026-06-08 09:23:33 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:18,896,951
INFO 2026-06-08 09:23:33 MarkDuplicates Tracking 336409 as yet unmatched pairs. 30985 records in RAM.
INFO 2026-06-08 09:23:34 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,029
INFO 2026-06-08 09:23:34 MarkDuplicates Tracking 336061 as yet unmatched pairs. 30635 records in RAM.
INFO 2026-06-08 09:23:35 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,056
INFO 2026-06-08 09:23:35 MarkDuplicates Tracking 334902 as yet unmatched pairs. 29476 records in RAM.
INFO 2026-06-08 09:23:37 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr16:22,309,006
INFO 2026-06-08 09:23:37 MarkDuplicates Tracking 334487 as yet unmatched pairs. 29059 records in RAM.
INFO 2026-06-08 09:23:38 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,717
INFO 2026-06-08 09:23:38 MarkDuplicates Tracking 334826 as yet unmatched pairs. 29398 records in RAM.
INFO 2026-06-08 09:23:39 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr16:27,358,913
INFO 2026-06-08 09:23:39 MarkDuplicates Tracking 333291 as yet unmatched pairs. 27863 records in RAM.
INFO 2026-06-08 09:23:41 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr16:28,732,006
INFO 2026-06-08 09:23:41 MarkDuplicates Tracking 331780 as yet unmatched pairs. 26347 records in RAM.
INFO 2026-06-08 09:23:42 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:29,435,529
INFO 2026-06-08 09:23:42 MarkDuplicates Tracking 331904 as yet unmatched pairs. 26468 records in RAM.
INFO 2026-06-08 09:23:43 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr16:29,804,896
INFO 2026-06-08 09:23:43 MarkDuplicates Tracking 330882 as yet unmatched pairs. 25446 records in RAM.
INFO 2026-06-08 09:23:45 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:30,188,359
INFO 2026-06-08 09:23:45 MarkDuplicates Tracking 328857 as yet unmatched pairs. 23421 records in RAM.
INFO 2026-06-08 09:23:46 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr16:30,444,958
INFO 2026-06-08 09:23:46 MarkDuplicates Tracking 329166 as yet unmatched pairs. 23726 records in RAM.
INFO 2026-06-08 09:23:48 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:30,979,429
INFO 2026-06-08 09:23:48 MarkDuplicates Tracking 326194 as yet unmatched pairs. 20754 records in RAM.
INFO 2026-06-08 09:23:49 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:31,753,774
INFO 2026-06-08 09:23:49 MarkDuplicates Tracking 324504 as yet unmatched pairs. 19064 records in RAM.
INFO 2026-06-08 09:23:50 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:48,244,329
INFO 2026-06-08 09:23:50 MarkDuplicates Tracking 323718 as yet unmatched pairs. 18273 records in RAM.
INFO 2026-06-08 09:23:52 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:55,479,482
INFO 2026-06-08 09:23:52 MarkDuplicates Tracking 322401 as yet unmatched pairs. 16943 records in RAM.
INFO 2026-06-08 09:23:54 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:57,744,462
INFO 2026-06-08 09:23:54 MarkDuplicates Tracking 319695 as yet unmatched pairs. 14237 records in RAM.
INFO 2026-06-08 09:23:56 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:67,195,905
INFO 2026-06-08 09:23:56 MarkDuplicates Tracking 318101 as yet unmatched pairs. 12643 records in RAM.
INFO 2026-06-08 09:23:57 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:68,302,441
INFO 2026-06-08 09:23:57 MarkDuplicates Tracking 316046 as yet unmatched pairs. 10579 records in RAM.
INFO 2026-06-08 09:23:59 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:70,315,920
INFO 2026-06-08 09:23:59 MarkDuplicates Tracking 314654 as yet unmatched pairs. 9187 records in RAM.
INFO 2026-06-08 09:24:00 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:74,360,742
INFO 2026-06-08 09:24:00 MarkDuplicates Tracking 313236 as yet unmatched pairs. 7769 records in RAM.
INFO 2026-06-08 09:24:02 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:84,081,804
INFO 2026-06-08 09:24:02 MarkDuplicates Tracking 311894 as yet unmatched pairs. 6427 records in RAM.
INFO 2026-06-08 09:24:03 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:87,840,446
INFO 2026-06-08 09:24:03 MarkDuplicates Tracking 309996 as yet unmatched pairs. 4527 records in RAM.
INFO 2026-06-08 09:24:05 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:88,809,506
INFO 2026-06-08 09:24:05 MarkDuplicates Tracking 308185 as yet unmatched pairs. 2714 records in RAM.
INFO 2026-06-08 09:24:07 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:89,887,649
INFO 2026-06-08 09:24:07 MarkDuplicates Tracking 306219 as yet unmatched pairs. 747 records in RAM.
INFO 2026-06-08 09:24:09 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr17:1,590,868
INFO 2026-06-08 09:24:09 MarkDuplicates Tracking 304561 as yet unmatched pairs. 139419 records in RAM.
INFO 2026-06-08 09:24:11 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr17:2,365,107
INFO 2026-06-08 09:24:11 MarkDuplicates Tracking 302575 as yet unmatched pairs. 137431 records in RAM.
INFO 2026-06-08 09:24:13 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:4,539,386
INFO 2026-06-08 09:24:13 MarkDuplicates Tracking 301075 as yet unmatched pairs. 135930 records in RAM.
INFO 2026-06-08 09:24:14 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr17:5,181,460
INFO 2026-06-08 09:24:14 MarkDuplicates Tracking 299061 as yet unmatched pairs. 133916 records in RAM.
INFO 2026-06-08 09:24:16 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr17:7,414,806
INFO 2026-06-08 09:24:16 MarkDuplicates Tracking 297455 as yet unmatched pairs. 132310 records in RAM.
INFO 2026-06-08 09:24:17 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr17:7,897,270
INFO 2026-06-08 09:24:17 MarkDuplicates Tracking 296073 as yet unmatched pairs. 130927 records in RAM.
INFO 2026-06-08 09:24:19 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr17:15,628,788
INFO 2026-06-08 09:24:19 MarkDuplicates Tracking 294375 as yet unmatched pairs. 129229 records in RAM.
INFO 2026-06-08 09:24:21 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr17:17,820,503
INFO 2026-06-08 09:24:21 MarkDuplicates Tracking 292908 as yet unmatched pairs. 127761 records in RAM.
INFO 2026-06-08 09:24:22 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr17:27,294,271
INFO 2026-06-08 09:24:22 MarkDuplicates Tracking 291657 as yet unmatched pairs. 126510 records in RAM.
INFO 2026-06-08 09:24:24 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr17:29,287,349
INFO 2026-06-08 09:24:24 MarkDuplicates Tracking 290356 as yet unmatched pairs. 125209 records in RAM.
INFO 2026-06-08 09:24:26 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:35,106,433
INFO 2026-06-08 09:24:26 MarkDuplicates Tracking 288404 as yet unmatched pairs. 123254 records in RAM.
INFO 2026-06-08 09:24:27 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr17:37,570,662
INFO 2026-06-08 09:24:27 MarkDuplicates Tracking 287243 as yet unmatched pairs. 122093 records in RAM.
INFO 2026-06-08 09:24:28 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:39,204,580
INFO 2026-06-08 09:24:28 MarkDuplicates Tracking 285638 as yet unmatched pairs. 120485 records in RAM.
INFO 2026-06-08 09:24:30 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:39,669,814
INFO 2026-06-08 09:24:30 MarkDuplicates Tracking 291028 as yet unmatched pairs. 125822 records in RAM.
INFO 2026-06-08 09:24:32 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:39,700,218
INFO 2026-06-08 09:24:32 MarkDuplicates Tracking 366372 as yet unmatched pairs. 201166 records in RAM.
INFO 2026-06-08 09:24:33 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr17:39,707,042
INFO 2026-06-08 09:24:33 MarkDuplicates Tracking 367765 as yet unmatched pairs. 202550 records in RAM.
INFO 2026-06-08 09:24:35 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr17:39,708,394
INFO 2026-06-08 09:24:35 MarkDuplicates Tracking 333648 as yet unmatched pairs. 168421 records in RAM.
INFO 2026-06-08 09:24:37 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,375
INFO 2026-06-08 09:24:37 MarkDuplicates Tracking 346125 as yet unmatched pairs. 180898 records in RAM.
INFO 2026-06-08 09:24:39 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,086
INFO 2026-06-08 09:24:39 MarkDuplicates Tracking 403337 as yet unmatched pairs. 238110 records in RAM.
INFO 2026-06-08 09:24:41 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr17:39,710,352
INFO 2026-06-08 09:24:41 MarkDuplicates Tracking 357576 as yet unmatched pairs. 192346 records in RAM.
INFO 2026-06-08 09:24:43 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr17:39,711,955
INFO 2026-06-08 09:24:43 MarkDuplicates Tracking 349286 as yet unmatched pairs. 184041 records in RAM.
INFO 2026-06-08 09:24:44 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:39,712,419
INFO 2026-06-08 09:24:44 MarkDuplicates Tracking 369024 as yet unmatched pairs. 203746 records in RAM.
INFO 2026-06-08 09:24:46 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,489
INFO 2026-06-08 09:24:46 MarkDuplicates Tracking 324263 as yet unmatched pairs. 158960 records in RAM.
INFO 2026-06-08 09:24:48 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,906
INFO 2026-06-08 09:24:48 MarkDuplicates Tracking 355233 as yet unmatched pairs. 189928 records in RAM.
INFO 2026-06-08 09:24:49 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:39,716,417
INFO 2026-06-08 09:24:49 MarkDuplicates Tracking 380088 as yet unmatched pairs. 214737 records in RAM.
INFO 2026-06-08 09:24:51 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:39,717,337
INFO 2026-06-08 09:24:51 MarkDuplicates Tracking 348916 as yet unmatched pairs. 183103 records in RAM.
INFO 2026-06-08 09:24:53 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,323
INFO 2026-06-08 09:24:53 MarkDuplicates Tracking 346910 as yet unmatched pairs. 181079 records in RAM.
INFO 2026-06-08 09:24:54 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,605
INFO 2026-06-08 09:24:54 MarkDuplicates Tracking 312036 as yet unmatched pairs. 146202 records in RAM.
INFO 2026-06-08 09:24:56 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:39,724,787
INFO 2026-06-08 09:24:56 MarkDuplicates Tracking 324316 as yet unmatched pairs. 158482 records in RAM.
INFO 2026-06-08 09:24:58 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,338
INFO 2026-06-08 09:24:58 MarkDuplicates Tracking 299317 as yet unmatched pairs. 133479 records in RAM.
INFO 2026-06-08 09:25:00 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,597
INFO 2026-06-08 09:25:00 MarkDuplicates Tracking 318334 as yet unmatched pairs. 152496 records in RAM.
INFO 2026-06-08 09:25:01 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,309
INFO 2026-06-08 09:25:01 MarkDuplicates Tracking 307978 as yet unmatched pairs. 142140 records in RAM.
INFO 2026-06-08 09:25:03 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,782
INFO 2026-06-08 09:25:03 MarkDuplicates Tracking 274504 as yet unmatched pairs. 108666 records in RAM.
INFO 2026-06-08 09:25:04 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:39,746,936
INFO 2026-06-08 09:25:04 MarkDuplicates Tracking 252093 as yet unmatched pairs. 86255 records in RAM.
INFO 2026-06-08 09:25:06 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:41,524,438
INFO 2026-06-08 09:25:06 MarkDuplicates Tracking 250368 as yet unmatched pairs. 84520 records in RAM.
INFO 2026-06-08 09:25:08 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:42,565,904
INFO 2026-06-08 09:25:08 MarkDuplicates Tracking 248323 as yet unmatched pairs. 82474 records in RAM.
INFO 2026-06-08 09:25:09 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:44,352,034
INFO 2026-06-08 09:25:09 MarkDuplicates Tracking 247769 as yet unmatched pairs. 81920 records in RAM.
INFO 2026-06-08 09:25:11 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:46,548,676
INFO 2026-06-08 09:25:11 MarkDuplicates Tracking 246068 as yet unmatched pairs. 80216 records in RAM.
INFO 2026-06-08 09:25:12 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:49,622,011
INFO 2026-06-08 09:25:12 MarkDuplicates Tracking 245383 as yet unmatched pairs. 79530 records in RAM.
INFO 2026-06-08 09:25:15 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,880
INFO 2026-06-08 09:25:15 MarkDuplicates Tracking 248332 as yet unmatched pairs. 82477 records in RAM.
INFO 2026-06-08 09:25:16 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,929
INFO 2026-06-08 09:25:16 MarkDuplicates Tracking 268002 as yet unmatched pairs. 102147 records in RAM.
INFO 2026-06-08 09:25:18 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,264
INFO 2026-06-08 09:25:18 MarkDuplicates Tracking 257784 as yet unmatched pairs. 91918 records in RAM.
INFO 2026-06-08 09:25:20 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,542
INFO 2026-06-08 09:25:20 MarkDuplicates Tracking 259281 as yet unmatched pairs. 93414 records in RAM.
INFO 2026-06-08 09:25:21 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,659
INFO 2026-06-08 09:25:21 MarkDuplicates Tracking 266371 as yet unmatched pairs. 100503 records in RAM.
INFO 2026-06-08 09:25:23 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,411
INFO 2026-06-08 09:25:23 MarkDuplicates Tracking 260827 as yet unmatched pairs. 94959 records in RAM.
INFO 2026-06-08 09:25:25 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,604
INFO 2026-06-08 09:25:25 MarkDuplicates Tracking 272717 as yet unmatched pairs. 106849 records in RAM.
INFO 2026-06-08 09:25:26 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,039
INFO 2026-06-08 09:25:26 MarkDuplicates Tracking 278242 as yet unmatched pairs. 112374 records in RAM.
INFO 2026-06-08 09:25:28 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,566
INFO 2026-06-08 09:25:28 MarkDuplicates Tracking 241747 as yet unmatched pairs. 75878 records in RAM.
INFO 2026-06-08 09:25:30 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,394,962
INFO 2026-06-08 09:25:30 MarkDuplicates Tracking 236368 as yet unmatched pairs. 70497 records in RAM.
INFO 2026-06-08 09:27:34 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 124s. Last read position: chr17:50,655,953
INFO 2026-06-08 09:27:34 MarkDuplicates Tracking 226165 as yet unmatched pairs. 60290 records in RAM.
INFO 2026-06-08 09:27:36 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 2s. Last read position: chr17:50,863,469
INFO 2026-06-08 09:27:36 MarkDuplicates Tracking 225687 as yet unmatched pairs. 59809 records in RAM.
INFO 2026-06-08 09:27:38 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:54,900,875
INFO 2026-06-08 09:27:38 MarkDuplicates Tracking 222982 as yet unmatched pairs. 57099 records in RAM.
INFO 2026-06-08 09:27:40 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr17:58,491,711
INFO 2026-06-08 09:27:40 MarkDuplicates Tracking 221132 as yet unmatched pairs. 55249 records in RAM.
INFO 2026-06-08 09:27:42 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr17:59,666,230
INFO 2026-06-08 09:27:42 MarkDuplicates Tracking 227563 as yet unmatched pairs. 61680 records in RAM.
INFO 2026-06-08 09:27:43 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr17:59,685,714
INFO 2026-06-08 09:27:43 MarkDuplicates Tracking 225140 as yet unmatched pairs. 59257 records in RAM.
INFO 2026-06-08 09:27:45 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr17:62,010,672
INFO 2026-06-08 09:27:45 MarkDuplicates Tracking 217544 as yet unmatched pairs. 51661 records in RAM.
INFO 2026-06-08 09:27:47 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:63,787,229
INFO 2026-06-08 09:27:47 MarkDuplicates Tracking 215259 as yet unmatched pairs. 49374 records in RAM.
INFO 2026-06-08 09:27:48 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr17:64,502,171
INFO 2026-06-08 09:27:48 MarkDuplicates Tracking 214921 as yet unmatched pairs. 49027 records in RAM.
INFO 2026-06-08 09:27:50 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr17:67,167,562
INFO 2026-06-08 09:27:50 MarkDuplicates Tracking 212250 as yet unmatched pairs. 46356 records in RAM.
INFO 2026-06-08 09:27:52 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 2s. Last read position: chr17:69,260,369
INFO 2026-06-08 09:27:52 MarkDuplicates Tracking 210675 as yet unmatched pairs. 44781 records in RAM.
INFO 2026-06-08 09:27:53 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:75,238,716
INFO 2026-06-08 09:27:53 MarkDuplicates Tracking 209286 as yet unmatched pairs. 43392 records in RAM.
INFO 2026-06-08 09:27:55 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:75,949,810
INFO 2026-06-08 09:27:55 MarkDuplicates Tracking 207527 as yet unmatched pairs. 41633 records in RAM.
INFO 2026-06-08 09:27:57 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 2s. Last read position: chr17:78,119,362
INFO 2026-06-08 09:27:57 MarkDuplicates Tracking 205880 as yet unmatched pairs. 39982 records in RAM.
INFO 2026-06-08 09:27:58 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:80,104,633
INFO 2026-06-08 09:27:58 MarkDuplicates Tracking 209773 as yet unmatched pairs. 43868 records in RAM.
INFO 2026-06-08 09:28:00 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:80,287,910
INFO 2026-06-08 09:28:00 MarkDuplicates Tracking 208329 as yet unmatched pairs. 42414 records in RAM.
INFO 2026-06-08 09:28:02 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 2s. Last read position: chr17:80,346,486
INFO 2026-06-08 09:28:02 MarkDuplicates Tracking 204107 as yet unmatched pairs. 38189 records in RAM.
INFO 2026-06-08 09:28:05 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr17:80,599,609
INFO 2026-06-08 09:28:05 MarkDuplicates Tracking 200851 as yet unmatched pairs. 34931 records in RAM.
INFO 2026-06-08 09:28:06 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,394
INFO 2026-06-08 09:28:06 MarkDuplicates Tracking 199022 as yet unmatched pairs. 33095 records in RAM.
INFO 2026-06-08 09:28:08 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:81,701,097
INFO 2026-06-08 09:28:08 MarkDuplicates Tracking 198139 as yet unmatched pairs. 32209 records in RAM.
INFO 2026-06-08 09:28:09 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:81,846,511
INFO 2026-06-08 09:28:09 MarkDuplicates Tracking 202201 as yet unmatched pairs. 36271 records in RAM.
INFO 2026-06-08 09:28:11 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:81,869,585
INFO 2026-06-08 09:28:11 MarkDuplicates Tracking 195706 as yet unmatched pairs. 29776 records in RAM.
INFO 2026-06-08 09:28:13 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:82,019,041
INFO 2026-06-08 09:28:13 MarkDuplicates Tracking 191037 as yet unmatched pairs. 25107 records in RAM.
INFO 2026-06-08 09:28:14 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr17:82,058,334
INFO 2026-06-08 09:28:14 MarkDuplicates Tracking 191053 as yet unmatched pairs. 25122 records in RAM.
INFO 2026-06-08 09:28:16 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:82,080,228
INFO 2026-06-08 09:28:16 MarkDuplicates Tracking 195835 as yet unmatched pairs. 29901 records in RAM.
INFO 2026-06-08 09:28:17 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:82,082,035
INFO 2026-06-08 09:28:17 MarkDuplicates Tracking 196310 as yet unmatched pairs. 30374 records in RAM.
INFO 2026-06-08 09:28:19 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:82,083,808
INFO 2026-06-08 09:28:19 MarkDuplicates Tracking 204011 as yet unmatched pairs. 38073 records in RAM.
INFO 2026-06-08 09:28:20 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:82,084,702
INFO 2026-06-08 09:28:20 MarkDuplicates Tracking 204198 as yet unmatched pairs. 38259 records in RAM.
INFO 2026-06-08 09:28:22 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:82,086,273
INFO 2026-06-08 09:28:22 MarkDuplicates Tracking 208151 as yet unmatched pairs. 42209 records in RAM.
INFO 2026-06-08 09:28:24 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:82,087,724
INFO 2026-06-08 09:28:24 MarkDuplicates Tracking 184335 as yet unmatched pairs. 18385 records in RAM.
INFO 2026-06-08 09:28:26 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 2s. Last read position: chr17:82,089,142
INFO 2026-06-08 09:28:26 MarkDuplicates Tracking 193812 as yet unmatched pairs. 27856 records in RAM.
INFO 2026-06-08 09:28:28 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 2s. Last read position: chr17:82,091,483
INFO 2026-06-08 09:28:28 MarkDuplicates Tracking 187063 as yet unmatched pairs. 21105 records in RAM.
INFO 2026-06-08 09:28:31 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 2s. Last read position: chr17:82,093,353
INFO 2026-06-08 09:28:31 MarkDuplicates Tracking 189806 as yet unmatched pairs. 23848 records in RAM.
INFO 2026-06-08 09:28:32 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:82,415,512
INFO 2026-06-08 09:28:32 MarkDuplicates Tracking 169223 as yet unmatched pairs. 3265 records in RAM.
INFO 2026-06-08 09:28:34 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:82,900,651
INFO 2026-06-08 09:28:34 MarkDuplicates Tracking 170426 as yet unmatched pairs. 4465 records in RAM.
INFO 2026-06-08 09:28:35 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr18:8,784,402
INFO 2026-06-08 09:28:35 MarkDuplicates Tracking 164910 as yet unmatched pairs. 7501 records in RAM.
INFO 2026-06-08 09:28:37 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr18:23,214,025
INFO 2026-06-08 09:28:37 MarkDuplicates Tracking 163481 as yet unmatched pairs. 6068 records in RAM.
INFO 2026-06-08 09:28:38 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr18:41,990,527
INFO 2026-06-08 09:28:38 MarkDuplicates Tracking 162338 as yet unmatched pairs. 4925 records in RAM.
INFO 2026-06-08 09:28:40 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr18:54,164,659
INFO 2026-06-08 09:28:40 MarkDuplicates Tracking 160814 as yet unmatched pairs. 3400 records in RAM.
INFO 2026-06-08 09:28:42 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr18:62,574,970
INFO 2026-06-08 09:28:42 MarkDuplicates Tracking 159658 as yet unmatched pairs. 2243 records in RAM.
INFO 2026-06-08 09:28:44 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:417,313
INFO 2026-06-08 09:28:44 MarkDuplicates Tracking 157580 as yet unmatched pairs. 65809 records in RAM.
INFO 2026-06-08 09:28:45 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:1,085,943
INFO 2026-06-08 09:28:45 MarkDuplicates Tracking 156336 as yet unmatched pairs. 64565 records in RAM.
INFO 2026-06-08 09:28:46 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:1,438,806
INFO 2026-06-08 09:28:46 MarkDuplicates Tracking 158482 as yet unmatched pairs. 66710 records in RAM.
INFO 2026-06-08 09:28:48 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:2,042,777
INFO 2026-06-08 09:28:48 MarkDuplicates Tracking 152491 as yet unmatched pairs. 60719 records in RAM.
INFO 2026-06-08 09:28:50 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:3,193,319
INFO 2026-06-08 09:28:50 MarkDuplicates Tracking 149988 as yet unmatched pairs. 58216 records in RAM.
INFO 2026-06-08 09:28:52 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr19:4,446,553
INFO 2026-06-08 09:28:52 MarkDuplicates Tracking 147536 as yet unmatched pairs. 55763 records in RAM.
INFO 2026-06-08 09:28:54 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr19:5,693,319
INFO 2026-06-08 09:28:54 MarkDuplicates Tracking 146134 as yet unmatched pairs. 54359 records in RAM.
INFO 2026-06-08 09:28:56 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:6,707,916
INFO 2026-06-08 09:28:56 MarkDuplicates Tracking 144964 as yet unmatched pairs. 53189 records in RAM.
INFO 2026-06-08 09:28:58 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:7,849,255
INFO 2026-06-08 09:28:58 MarkDuplicates Tracking 142112 as yet unmatched pairs. 50337 records in RAM.
INFO 2026-06-08 09:28:59 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:10,109,690
INFO 2026-06-08 09:28:59 MarkDuplicates Tracking 140562 as yet unmatched pairs. 48787 records in RAM.
INFO 2026-06-08 09:29:01 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:10,772,546
INFO 2026-06-08 09:29:01 MarkDuplicates Tracking 139656 as yet unmatched pairs. 47872 records in RAM.
INFO 2026-06-08 09:29:02 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:11,576,824
INFO 2026-06-08 09:29:02 MarkDuplicates Tracking 138465 as yet unmatched pairs. 46680 records in RAM.
INFO 2026-06-08 09:29:04 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:12,939,617
INFO 2026-06-08 09:29:04 MarkDuplicates Tracking 136478 as yet unmatched pairs. 44693 records in RAM.
INFO 2026-06-08 09:29:06 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:14,450,377
INFO 2026-06-08 09:29:06 MarkDuplicates Tracking 133618 as yet unmatched pairs. 41833 records in RAM.
INFO 2026-06-08 09:29:07 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:15,253,592
INFO 2026-06-08 09:29:07 MarkDuplicates Tracking 134510 as yet unmatched pairs. 42725 records in RAM.
INFO 2026-06-08 09:29:09 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:16,893,374
INFO 2026-06-08 09:29:09 MarkDuplicates Tracking 129677 as yet unmatched pairs. 37892 records in RAM.
INFO 2026-06-08 09:29:10 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:17,841,660
INFO 2026-06-08 09:29:10 MarkDuplicates Tracking 127979 as yet unmatched pairs. 36194 records in RAM.
INFO 2026-06-08 09:29:12 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:18,573,738
INFO 2026-06-08 09:29:12 MarkDuplicates Tracking 129622 as yet unmatched pairs. 37837 records in RAM.
INFO 2026-06-08 09:29:13 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:19,535,898
INFO 2026-06-08 09:29:13 MarkDuplicates Tracking 124440 as yet unmatched pairs. 32655 records in RAM.
INFO 2026-06-08 09:29:15 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:34,196,673
INFO 2026-06-08 09:29:15 MarkDuplicates Tracking 123212 as yet unmatched pairs. 31423 records in RAM.
INFO 2026-06-08 09:29:17 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:35,720,266
INFO 2026-06-08 09:29:17 MarkDuplicates Tracking 121029 as yet unmatched pairs. 29240 records in RAM.
INFO 2026-06-08 09:29:19 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr19:38,182,573
INFO 2026-06-08 09:29:19 MarkDuplicates Tracking 119334 as yet unmatched pairs. 27545 records in RAM.
INFO 2026-06-08 09:29:21 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 2s. Last read position: chr19:39,356,924
INFO 2026-06-08 09:29:21 MarkDuplicates Tracking 118348 as yet unmatched pairs. 26559 records in RAM.
INFO 2026-06-08 09:29:22 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:40,367,810
INFO 2026-06-08 09:29:22 MarkDuplicates Tracking 117078 as yet unmatched pairs. 25288 records in RAM.
INFO 2026-06-08 09:29:24 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:41,869,705
INFO 2026-06-08 09:29:24 MarkDuplicates Tracking 114372 as yet unmatched pairs. 22582 records in RAM.
INFO 2026-06-08 09:29:26 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:42,294,276
INFO 2026-06-08 09:29:26 MarkDuplicates Tracking 113304 as yet unmatched pairs. 21514 records in RAM.
INFO 2026-06-08 09:29:27 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:44,908,626
INFO 2026-06-08 09:29:27 MarkDuplicates Tracking 119367 as yet unmatched pairs. 27575 records in RAM.
INFO 2026-06-08 09:29:29 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:45,302,451
INFO 2026-06-08 09:29:29 MarkDuplicates Tracking 108255 as yet unmatched pairs. 16460 records in RAM.
INFO 2026-06-08 09:29:30 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:46,777,043
INFO 2026-06-08 09:29:30 MarkDuplicates Tracking 107047 as yet unmatched pairs. 15251 records in RAM.
INFO 2026-06-08 09:29:32 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:48,384,357
INFO 2026-06-08 09:29:32 MarkDuplicates Tracking 105497 as yet unmatched pairs. 13699 records in RAM.
INFO 2026-06-08 09:29:33 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:49,202,095
INFO 2026-06-08 09:29:33 MarkDuplicates Tracking 103163 as yet unmatched pairs. 11365 records in RAM.
INFO 2026-06-08 09:29:35 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:49,653,446
INFO 2026-06-08 09:29:35 MarkDuplicates Tracking 101109 as yet unmatched pairs. 9308 records in RAM.
INFO 2026-06-08 09:29:37 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:51,323,266
INFO 2026-06-08 09:29:37 MarkDuplicates Tracking 99090 as yet unmatched pairs. 7288 records in RAM.
INFO 2026-06-08 09:29:38 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:54,107,154
INFO 2026-06-08 09:29:38 MarkDuplicates Tracking 98026 as yet unmatched pairs. 6220 records in RAM.
INFO 2026-06-08 09:29:39 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:54,986,238
INFO 2026-06-08 09:29:39 MarkDuplicates Tracking 96389 as yet unmatched pairs. 4575 records in RAM.
INFO 2026-06-08 09:29:41 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:56,288,400
INFO 2026-06-08 09:29:41 MarkDuplicates Tracking 94086 as yet unmatched pairs. 2272 records in RAM.
INFO 2026-06-08 09:29:43 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:58,261,275
INFO 2026-06-08 09:29:43 MarkDuplicates Tracking 93440 as yet unmatched pairs. 1626 records in RAM.
INFO 2026-06-08 09:29:45 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr20:1,375,568
INFO 2026-06-08 09:29:45 MarkDuplicates Tracking 94079 as yet unmatched pairs. 25131 records in RAM.
INFO 2026-06-08 09:29:47 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 2s. Last read position: chr20:3,800,289
INFO 2026-06-08 09:29:47 MarkDuplicates Tracking 89613 as yet unmatched pairs. 20663 records in RAM.
INFO 2026-06-08 09:29:48 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr20:17,658,813
INFO 2026-06-08 09:29:48 MarkDuplicates Tracking 87790 as yet unmatched pairs. 18840 records in RAM.
INFO 2026-06-08 09:29:50 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr20:25,030,740
INFO 2026-06-08 09:29:50 MarkDuplicates Tracking 86746 as yet unmatched pairs. 17796 records in RAM.
INFO 2026-06-08 09:29:51 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr20:34,093,693
INFO 2026-06-08 09:29:51 MarkDuplicates Tracking 85333 as yet unmatched pairs. 16376 records in RAM.
INFO 2026-06-08 09:29:53 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr20:35,705,305
INFO 2026-06-08 09:29:53 MarkDuplicates Tracking 86332 as yet unmatched pairs. 17375 records in RAM.
INFO 2026-06-08 09:29:55 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr20:38,499,618
INFO 2026-06-08 09:29:55 MarkDuplicates Tracking 82565 as yet unmatched pairs. 13608 records in RAM.
INFO 2026-06-08 09:29:56 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr20:44,885,866
INFO 2026-06-08 09:29:56 MarkDuplicates Tracking 80621 as yet unmatched pairs. 11663 records in RAM.
INFO 2026-06-08 09:29:58 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr20:47,636,482
INFO 2026-06-08 09:29:58 MarkDuplicates Tracking 79327 as yet unmatched pairs. 10367 records in RAM.
INFO 2026-06-08 09:29:59 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr20:50,893,529
INFO 2026-06-08 09:29:59 MarkDuplicates Tracking 78130 as yet unmatched pairs. 9169 records in RAM.
INFO 2026-06-08 09:30:01 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr20:58,891,821
INFO 2026-06-08 09:30:01 MarkDuplicates Tracking 88270 as yet unmatched pairs. 19306 records in RAM.
INFO 2026-06-08 09:30:03 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr20:58,991,363
INFO 2026-06-08 09:30:03 MarkDuplicates Tracking 74773 as yet unmatched pairs. 5808 records in RAM.
INFO 2026-06-08 09:30:04 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr20:62,417,240
INFO 2026-06-08 09:30:04 MarkDuplicates Tracking 71868 as yet unmatched pairs. 2900 records in RAM.
INFO 2026-06-08 09:30:06 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr20:63,735,517
INFO 2026-06-08 09:30:06 MarkDuplicates Tracking 70536 as yet unmatched pairs. 1568 records in RAM.
INFO 2026-06-08 09:30:08 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,001
INFO 2026-06-08 09:30:08 MarkDuplicates Tracking 68275 as yet unmatched pairs. 12984 records in RAM.
INFO 2026-06-08 09:30:09 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,578
INFO 2026-06-08 09:30:09 MarkDuplicates Tracking 67454 as yet unmatched pairs. 12163 records in RAM.
INFO 2026-06-08 09:30:11 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 2s. Last read position: chr21:29,342,600
INFO 2026-06-08 09:30:11 MarkDuplicates Tracking 65695 as yet unmatched pairs. 10404 records in RAM.
INFO 2026-06-08 09:30:13 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr21:33,553,889
INFO 2026-06-08 09:30:13 MarkDuplicates Tracking 65187 as yet unmatched pairs. 9896 records in RAM.
INFO 2026-06-08 09:30:15 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr21:37,150,865
INFO 2026-06-08 09:30:15 MarkDuplicates Tracking 62704 as yet unmatched pairs. 7412 records in RAM.
INFO 2026-06-08 09:30:16 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr21:41,741,153
INFO 2026-06-08 09:30:16 MarkDuplicates Tracking 60815 as yet unmatched pairs. 5521 records in RAM.
INFO 2026-06-08 09:30:18 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr21:44,405,971
INFO 2026-06-08 09:30:18 MarkDuplicates Tracking 59288 as yet unmatched pairs. 3994 records in RAM.
INFO 2026-06-08 09:30:20 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr21:46,002,571
INFO 2026-06-08 09:30:20 MarkDuplicates Tracking 59492 as yet unmatched pairs. 4198 records in RAM.
INFO 2026-06-08 09:30:21 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr21:46,636,916
INFO 2026-06-08 09:30:21 MarkDuplicates Tracking 55745 as yet unmatched pairs. 451 records in RAM.
INFO 2026-06-08 09:30:23 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr22:19,968,681
INFO 2026-06-08 09:30:23 MarkDuplicates Tracking 54160 as yet unmatched pairs. 26785 records in RAM.
INFO 2026-06-08 09:30:25 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr22:21,939,648
INFO 2026-06-08 09:30:25 MarkDuplicates Tracking 52237 as yet unmatched pairs. 24856 records in RAM.
INFO 2026-06-08 09:30:26 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr22:23,837,110
INFO 2026-06-08 09:30:26 MarkDuplicates Tracking 51476 as yet unmatched pairs. 24094 records in RAM.
INFO 2026-06-08 09:30:28 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr22:25,028,792
INFO 2026-06-08 09:30:28 MarkDuplicates Tracking 48652 as yet unmatched pairs. 21269 records in RAM.
INFO 2026-06-08 09:30:30 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr22:29,282,393
INFO 2026-06-08 09:30:30 MarkDuplicates Tracking 49800 as yet unmatched pairs. 22417 records in RAM.
INFO 2026-06-08 09:30:31 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr22:30,341,824
INFO 2026-06-08 09:30:31 MarkDuplicates Tracking 45527 as yet unmatched pairs. 18144 records in RAM.
INFO 2026-06-08 09:30:33 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr22:32,857,272
INFO 2026-06-08 09:30:33 MarkDuplicates Tracking 44907 as yet unmatched pairs. 17524 records in RAM.
INFO 2026-06-08 09:30:35 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr22:36,316,536
INFO 2026-06-08 09:30:35 MarkDuplicates Tracking 43082 as yet unmatched pairs. 15699 records in RAM.
INFO 2026-06-08 09:30:37 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr22:37,816,725
INFO 2026-06-08 09:30:37 MarkDuplicates Tracking 40302 as yet unmatched pairs. 12919 records in RAM.
INFO 2026-06-08 09:30:38 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr22:39,014,309
INFO 2026-06-08 09:30:38 MarkDuplicates Tracking 38707 as yet unmatched pairs. 11324 records in RAM.
INFO 2026-06-08 09:30:40 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:41,127,632
INFO 2026-06-08 09:30:40 MarkDuplicates Tracking 37374 as yet unmatched pairs. 9991 records in RAM.
INFO 2026-06-08 09:30:41 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr22:42,211,297
INFO 2026-06-08 09:30:41 MarkDuplicates Tracking 35719 as yet unmatched pairs. 8336 records in RAM.
INFO 2026-06-08 09:30:43 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr22:42,572,451
INFO 2026-06-08 09:30:43 MarkDuplicates Tracking 43932 as yet unmatched pairs. 16549 records in RAM.
INFO 2026-06-08 09:30:44 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr22:46,668,799
INFO 2026-06-08 09:30:44 MarkDuplicates Tracking 32806 as yet unmatched pairs. 5423 records in RAM.
INFO 2026-06-08 09:30:46 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr22:50,288,020
INFO 2026-06-08 09:30:46 MarkDuplicates Tracking 32521 as yet unmatched pairs. 5138 records in RAM.
INFO 2026-06-08 09:30:48 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:50,529,495
INFO 2026-06-08 09:30:48 MarkDuplicates Tracking 30484 as yet unmatched pairs. 3101 records in RAM.
INFO 2026-06-08 09:30:49 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chrX:2,726,284
INFO 2026-06-08 09:30:49 MarkDuplicates Tracking 27662 as yet unmatched pairs. 25236 records in RAM.
INFO 2026-06-08 09:30:51 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chrX:10,129,999
INFO 2026-06-08 09:30:51 MarkDuplicates Tracking 26118 as yet unmatched pairs. 23692 records in RAM.
INFO 2026-06-08 09:30:52 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chrX:15,600,761
INFO 2026-06-08 09:30:52 MarkDuplicates Tracking 26012 as yet unmatched pairs. 23586 records in RAM.
INFO 2026-06-08 09:30:54 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chrX:24,071,583
INFO 2026-06-08 09:30:54 MarkDuplicates Tracking 23176 as yet unmatched pairs. 20750 records in RAM.
INFO 2026-06-08 09:30:56 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chrX:41,189,452
INFO 2026-06-08 09:30:56 MarkDuplicates Tracking 21202 as yet unmatched pairs. 18776 records in RAM.
INFO 2026-06-08 09:30:57 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chrX:47,202,963
INFO 2026-06-08 09:30:57 MarkDuplicates Tracking 20312 as yet unmatched pairs. 17885 records in RAM.
INFO 2026-06-08 09:30:59 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:48,944,270
INFO 2026-06-08 09:30:59 MarkDuplicates Tracking 17834 as yet unmatched pairs. 15407 records in RAM.
INFO 2026-06-08 09:31:01 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chrX:53,405,316
INFO 2026-06-08 09:31:01 MarkDuplicates Tracking 16793 as yet unmatched pairs. 14366 records in RAM.
INFO 2026-06-08 09:31:02 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chrX:54,812,219
INFO 2026-06-08 09:31:02 MarkDuplicates Tracking 17210 as yet unmatched pairs. 14783 records in RAM.
INFO 2026-06-08 09:31:03 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chrX:67,694,694
INFO 2026-06-08 09:31:03 MarkDuplicates Tracking 16228 as yet unmatched pairs. 13801 records in RAM.
INFO 2026-06-08 09:31:05 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:71,563,471
INFO 2026-06-08 09:31:05 MarkDuplicates Tracking 13673 as yet unmatched pairs. 11244 records in RAM.
INFO 2026-06-08 09:31:07 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chrX:79,171,014
INFO 2026-06-08 09:31:07 MarkDuplicates Tracking 10512 as yet unmatched pairs. 8083 records in RAM.
INFO 2026-06-08 09:31:08 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:115,719,077
INFO 2026-06-08 09:31:08 MarkDuplicates Tracking 8981 as yet unmatched pairs. 6552 records in RAM.
INFO 2026-06-08 09:31:10 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chrX:130,013,295
INFO 2026-06-08 09:31:10 MarkDuplicates Tracking 7665 as yet unmatched pairs. 5236 records in RAM.
INFO 2026-06-08 09:31:11 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:153,507,115
INFO 2026-06-08 09:31:11 MarkDuplicates Tracking 7273 as yet unmatched pairs. 4844 records in RAM.
INFO 2026-06-08 09:31:13 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:154,357,272
INFO 2026-06-08 09:31:13 MarkDuplicates Tracking 5283 as yet unmatched pairs. 2854 records in RAM.
INFO 2026-06-08 09:31:14 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chrX:154,532,989
INFO 2026-06-08 09:31:14 MarkDuplicates Tracking 3381 as yet unmatched pairs. 952 records in RAM.
INFO 2026-06-08 09:31:16 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,413
INFO 2026-06-08 09:31:16 MarkDuplicates Tracking 1667 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 09:31:17 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,733
INFO 2026-06-08 09:31:17 MarkDuplicates Tracking 65 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 09:31:17 MarkDuplicates Read 636094239 records. 0 pairs never matched.
INFO 2026-06-08 09:32:07 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141624; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:32:07 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:32:10 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:32:10 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:32:33 OpticalDuplicateFinder Large duplicate set. size = 1863
INFO 2026-06-08 09:32:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,155
INFO 2026-06-08 09:32:41 OpticalDuplicateFinder Large duplicate set. size = 1604
INFO 2026-06-08 09:32:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,346
INFO 2026-06-08 09:33:23 OpticalDuplicateFinder Large duplicate set. size = 1383
INFO 2026-06-08 09:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,238
INFO 2026-06-08 09:33:23 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 09:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,128
INFO 2026-06-08 09:33:23 OpticalDuplicateFinder Large duplicate set. size = 1747
INFO 2026-06-08 09:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,291
INFO 2026-06-08 09:33:23 OpticalDuplicateFinder Large duplicate set. size = 1374
INFO 2026-06-08 09:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,459
INFO 2026-06-08 09:33:23 OpticalDuplicateFinder Large duplicate set. size = 1394
INFO 2026-06-08 09:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,098
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder Large duplicate set. size = 1377
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,682
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder Large duplicate set. size = 1146
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,863
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder Large duplicate set. size = 1315
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,042
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,039
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,869
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,811
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder Large duplicate set. size = 1171
INFO 2026-06-08 09:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,093
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder Large duplicate set. size = 1635
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,468
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder Large duplicate set. size = 1979
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,505
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder Large duplicate set. size = 1587
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,241
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,491
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder Large duplicate set. size = 1445
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,354
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder Large duplicate set. size = 1470
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,315
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder Large duplicate set. size = 1340
INFO 2026-06-08 09:33:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,827
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,930
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 2510
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,522
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,109
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1541
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,050
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,751
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1237
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,515
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1465
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,276
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1511
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,495
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,068
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1419
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,187
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,150
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1456
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,676
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1353
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,918
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1058
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,674
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1179
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,529
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1368
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,764
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1697
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,514
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:33:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,814
INFO 2026-06-08 09:33:48 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:33:48 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:34:40 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:34:47 MarkDuplicates After generateDuplicateIndexes freeMemory: 203933568; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:34:47 MarkDuplicates Marking 380801063 records as duplicates.
INFO 2026-06-08 09:34:47 MarkDuplicates Found 17473243 optical duplicate clusters.
INFO 2026-06-08 09:34:47 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:35:03 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:23,695,839
INFO 2026-06-08 09:35:18 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:51,783,915
INFO 2026-06-08 09:35:33 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:46s. Time for last 10,000,000: 15s. Last read position: chr1:120,830,478
INFO 2026-06-08 09:35:48 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:01s. Time for last 10,000,000: 15s. Last read position: chr1:156,268,291
INFO 2026-06-08 09:36:04 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:16s. Time for last 10,000,000: 15s. Last read position: chr1:208,092,785
INFO 2026-06-08 09:36:19 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:31s. Time for last 10,000,000: 15s. Last read position: chr2:30,753,138
INFO 2026-06-08 09:36:34 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:47s. Time for last 10,000,000: 15s. Last read position: chr2:85,401,820
INFO 2026-06-08 09:36:49 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:02s. Time for last 10,000,000: 15s. Last read position: chr2:172,474,981
INFO 2026-06-08 09:37:04 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:17s. Time for last 10,000,000: 15s. Last read position: chr2:215,394,546
INFO 2026-06-08 09:37:20 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:32s. Time for last 10,000,000: 15s. Last read position: chr2:241,670,763
INFO 2026-06-08 09:37:35 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:48s. Time for last 10,000,000: 15s. Last read position: chr3:49,962,649
INFO 2026-06-08 09:37:50 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:03s. Time for last 10,000,000: 15s. Last read position: chr3:139,373,763
INFO 2026-06-08 09:38:06 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:18s. Time for last 10,000,000: 15s. Last read position: chr4:13,627,533
INFO 2026-06-08 09:38:21 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:34s. Time for last 10,000,000: 15s. Last read position: chr4:146,097,307
INFO 2026-06-08 09:38:36 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:49s. Time for last 10,000,000: 15s. Last read position: chr5:77,291,659
INFO 2026-06-08 09:38:51 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:04s. Time for last 10,000,000: 15s. Last read position: chr5:141,878,278
INFO 2026-06-08 09:39:06 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:19s. Time for last 10,000,000: 15s. Last read position: chr5:177,332,144
INFO 2026-06-08 09:39:21 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 14s. Last read position: chr6:29,889,348
INFO 2026-06-08 09:39:36 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:49s. Time for last 10,000,000: 14s. Last read position: chr6:43,008,728
INFO 2026-06-08 09:39:52 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:04s. Time for last 10,000,000: 15s. Last read position: chr6:158,766,934
INFO 2026-06-08 09:40:07 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:19s. Time for last 10,000,000: 15s. Last read position: chr7:72,942,284
INFO 2026-06-08 09:40:22 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:35s. Time for last 10,000,000: 15s. Last read position: chr7:106,905,190
INFO 2026-06-08 09:40:37 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:50s. Time for last 10,000,000: 15s. Last read position: chr8:20,252,902
INFO 2026-06-08 09:40:52 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:05s. Time for last 10,000,000: 15s. Last read position: chr8:99,156,604
INFO 2026-06-08 09:41:07 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 14s. Last read position: chr8:143,859,853
INFO 2026-06-08 09:41:22 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:34s. Time for last 10,000,000: 14s. Last read position: chr8:143,866,371
INFO 2026-06-08 09:41:36 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:49s. Time for last 10,000,000: 14s. Last read position: chr9:39,816,837
INFO 2026-06-08 09:41:52 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:04s. Time for last 10,000,000: 15s. Last read position: chr9:130,884,980
INFO 2026-06-08 09:42:07 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:19s. Time for last 10,000,000: 15s. Last read position: chr10:37,193,237
INFO 2026-06-08 09:42:22 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:34s. Time for last 10,000,000: 15s. Last read position: chr10:102,381,238
INFO 2026-06-08 09:42:37 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:50s. Time for last 10,000,000: 15s. Last read position: chr11:20,491,854
INFO 2026-06-08 09:42:52 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:05s. Time for last 10,000,000: 15s. Last read position: chr11:64,320,769
INFO 2026-06-08 09:43:07 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 15s. Last read position: chr11:103,154,594
INFO 2026-06-08 09:43:22 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:35s. Time for last 10,000,000: 15s. Last read position: chr12:9,418,605
INFO 2026-06-08 09:43:37 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:50s. Time for last 10,000,000: 15s. Last read position: chr12:54,856,877
INFO 2026-06-08 09:43:53 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 15s. Last read position: chr12:109,591,261
INFO 2026-06-08 09:44:08 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:21s. Time for last 10,000,000: 15s. Last read position: chr13:42,917,593
INFO 2026-06-08 09:44:23 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:36s. Time for last 10,000,000: 15s. Last read position: chr14:49,586,715
INFO 2026-06-08 09:44:38 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:51s. Time for last 10,000,000: 15s. Last read position: chr14:103,338,435
INFO 2026-06-08 09:44:53 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:05s. Time for last 10,000,000: 14s. Last read position: chr15:22,851,844
INFO 2026-06-08 09:45:08 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:21s. Time for last 10,000,000: 15s. Last read position: chr15:68,339,579
INFO 2026-06-08 09:45:23 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 15s. Last read position: chr16:2,109,128
INFO 2026-06-08 09:45:38 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:51s. Time for last 10,000,000: 15s. Last read position: chr16:21,405,029
INFO 2026-06-08 09:45:54 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:06s. Time for last 10,000,000: 15s. Last read position: chr16:30,979,429
INFO 2026-06-08 09:46:09 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:22s. Time for last 10,000,000: 15s. Last read position: chr16:87,840,446
INFO 2026-06-08 09:46:24 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:37s. Time for last 10,000,000: 15s. Last read position: chr17:17,820,503
INFO 2026-06-08 09:46:40 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:52s. Time for last 10,000,000: 15s. Last read position: chr17:39,709,375
INFO 2026-06-08 09:46:55 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:07s. Time for last 10,000,000: 15s. Last read position: chr17:39,723,605
INFO 2026-06-08 09:47:10 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:22s. Time for last 10,000,000: 15s. Last read position: chr17:46,548,676
INFO 2026-06-08 09:47:25 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:38s. Time for last 10,000,000: 15s. Last read position: chr17:50,199,566
INFO 2026-06-08 09:47:40 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:53s. Time for last 10,000,000: 15s. Last read position: chr17:64,502,171
INFO 2026-06-08 09:47:56 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:08s. Time for last 10,000,000: 15s. Last read position: chr17:81,511,394
INFO 2026-06-08 09:48:11 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:23s. Time for last 10,000,000: 15s. Last read position: chr17:82,086,273
INFO 2026-06-08 09:48:26 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:39s. Time for last 10,000,000: 15s. Last read position: chr18:54,164,659
INFO 2026-06-08 09:48:41 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:13:54s. Time for last 10,000,000: 15s. Last read position: chr19:7,849,255
INFO 2026-06-08 09:48:56 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:09s. Time for last 10,000,000: 15s. Last read position: chr19:19,535,898
INFO 2026-06-08 09:49:11 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:24s. Time for last 10,000,000: 14s. Last read position: chr19:46,777,043
INFO 2026-06-08 09:49:26 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:39s. Time for last 10,000,000: 14s. Last read position: chr20:3,800,289
INFO 2026-06-08 09:49:41 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:14:54s. Time for last 10,000,000: 15s. Last read position: chr20:58,991,363
INFO 2026-06-08 09:49:56 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 14s. Last read position: chr21:46,002,571
INFO 2026-06-08 09:50:11 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:24s. Time for last 10,000,000: 15s. Last read position: chr22:37,816,725
INFO 2026-06-08 09:50:27 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:39s. Time for last 10,000,000: 15s. Last read position: chrX:15,600,761
INFO 2026-06-08 09:50:42 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:15:54s. Time for last 10,000,000: 15s. Last read position: chrX:115,719,077
INFO 2026-06-08 09:50:57 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:50:57 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:50:57 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:50:57 MarkDuplicates Before output close freeMemory: 203875536; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:50:57 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:50:57 MarkDuplicates After output close freeMemory: 104131680; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:50:57 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.59 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory