Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/e5533b00545b2e1d21ce584f957824/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/e5533b00545b2e1d21ce584f957824/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/1a24524e5d49adb21f4fc902e2d236/659_ciJ-T1-TRNA-1_B23WHTKLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/8cb1b0b6f3015cec53c84a0f448d08/659_ciJ-T1-TRNA-1_B23WHTKLT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_ciJ-T1-TRNA-1_B23WHTKLT4_1/abundance.h5
Successfully converted 659_ciJ-T1-TRNA-1_B23WHTKLT4_1/abundance.h5 to 659_ciJ-T1-TRNA-1_B23WHTKLT4_1_kallisto_mqc.tsv
  Sample: 659_ciJ-T1-TRNA-1_B23WHTKLT4_1
  Mean Fragment Length: 161.7 bp
  Median Fragment Length: 146.0 bp
  pct_mito_est_counts: 0.003%
  pct_ribo_est_counts: 0.856%
  pct_hk_est_counts: 0.402%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.006%
  pct_ribo_tpm: 2.686%
  pct_hk_tpm: 0.611%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.007%