File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/2d2719152e2ac64c2824c76f6c01c0/.command.out
Size
1.7 KB
Attempt
  AIH curated blacklist: matched 5 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 159
  Pass (FILTER=PASS): 16 (10.1%)
  Fail (FILTER=FAIL): 143 (89.9%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 5
  All 5 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 29
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 27
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 16
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 13
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 10
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 9
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 6
  confidence_below_min(low<high): 5
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
  total_reads_below_min(5.0<8.0): 2
  total_reads_below_min(3.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2

Breakdown by confidence:
  high: 16 pass, 7 fail (total: 23)
  low: 0 pass, 58 fail (total: 58)
  medium: 0 pass, 78 fail (total: 78)
Arriba filter: 159 rows -> 16 PASS; wrote 659_cIX-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered.tsv and 659_cIX-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_cIX-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filter_summary.txt