File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/96747b9552e584db18925b4621e87d/.command.log
Size
2.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bCu-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/dc3408f3268ffc1d86ffc00d76be19/659_bCu-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/b3605ccc35834ad4a7e9c8a0b678e8/659_bCu-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/96747b9552e584db18925b4621e87d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/96747b9552e584db18925b4621e87d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TNS1--ALK
starfusion
arriba
NAV2--NELL1
starfusion
arriba
TRPC2--WEE1
starfusion
arriba
ADAM23--HDAC4
starfusion
arriba
PPFIBP2--PARVA
starfusion
arriba
IRAG1--ZNF143
starfusion
arriba
NELL1--INSC
arriba

  0%|          | 0/7 [00:00<?, ?it/s]
Processing TNS1--ALK:   0%|          | 0/7 [00:00<?, ?it/s]
Processing TNS1--ALK:  14%|█▍        | 1/7 [00:00<00:00,  8.50it/s]
Processing NAV2--NELL1:  14%|█▍        | 1/7 [00:00<00:00,  8.50it/s]
Processing NAV2--NELL1:  29%|██▊       | 2/7 [00:00<00:00,  9.00it/s]
Processing TRPC2--WEE1:  29%|██▊       | 2/7 [00:00<00:00,  9.00it/s]
Processing TRPC2--WEE1:  43%|████▎     | 3/7 [00:00<00:00,  9.16it/s]
Processing ADAM23--HDAC4:  43%|████▎     | 3/7 [00:00<00:00,  9.16it/s]
Processing ADAM23--HDAC4:  57%|█████▋    | 4/7 [00:00<00:00,  9.24it/s]
Processing PPFIBP2--PARVA:  57%|█████▋    | 4/7 [00:00<00:00,  9.24it/s]
Processing PPFIBP2--PARVA:  71%|███████▏  | 5/7 [00:00<00:00,  9.28it/s]
Processing IRAG1--ZNF143:  71%|███████▏  | 5/7 [00:00<00:00,  9.28it/s] 
Processing IRAG1--ZNF143:  86%|████████▌ | 6/7 [00:00<00:00,  9.30it/s]
Processing NELL1--INSC:  86%|████████▌ | 6/7 [00:00<00:00,  9.30it/s]  
Processing NELL1--INSC: 100%|██████████| 7/7 [00:00<00:00,  9.30it/s]
Processing NELL1--INSC: 100%|██████████| 7/7 [00:00<00:00,  9.22it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory