File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/0273f44f0780547e572af1c83ea576/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:11:38
                             Started mapping on |	Jun 08 10:18:03
                                    Finished on |	Jun 08 11:10:54
       Mapping speed, Million of reads per hour |	335.08

                          Number of input reads |	295150503
                      Average input read length |	234
                                    UNIQUE READS:
                   Uniquely mapped reads number |	279990147
                        Uniquely mapped reads % |	94.86%
                          Average mapped length |	234.35
                       Number of splices: Total |	259937517
            Number of splices: Annotated (sjdb) |	255112657
                       Number of splices: GT/AG |	256174733
                       Number of splices: GC/AG |	1768685
                       Number of splices: AT/AC |	195363
               Number of splices: Non-canonical |	1798736
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.19
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.63
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11305963
             % of reads mapped to multiple loci |	3.83%
        Number of reads mapped to too many loci |	1062017
             % of reads mapped to too many loci |	0.36%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2255200
                 % of reads unmapped: too short |	0.76%
                Number of reads unmapped: other |	537176
                     % of reads unmapped: other |	0.18%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%