File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/749507003c2461cdeed9ee0c3ecd70/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:51:43
                             Started mapping on |	Jun 08 08:58:04
                                    Finished on |	Jun 08 09:33:58
       Mapping speed, Million of reads per hour |	275.40

                          Number of input reads |	164779021
                      Average input read length |	253
                                    UNIQUE READS:
                   Uniquely mapped reads number |	157206663
                        Uniquely mapped reads % |	95.40%
                          Average mapped length |	252.68
                       Number of splices: Total |	166352951
            Number of splices: Annotated (sjdb) |	163632317
                       Number of splices: GT/AG |	164371696
                       Number of splices: GC/AG |	1079969
                       Number of splices: AT/AC |	100754
               Number of splices: Non-canonical |	800532
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.22
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.59
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5568878
             % of reads mapped to multiple loci |	3.38%
        Number of reads mapped to too many loci |	639954
             % of reads mapped to too many loci |	0.39%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1184859
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	178667
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%