File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/ed8621bad785282ed56e11b34173a4/.command.log
Size
3.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bUW-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/c237111c676d8c8ca59d28734fda48/659_bUW-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/ed8621bad785282ed56e11b34173a4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/ed8621bad785282ed56e11b34173a4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/77c6bd3bb035a57a6ce67f80a42a1f/659_bUW-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
EIF3E--RSPO2
starfusion
arriba
CCDC6--RET
starfusion
arriba
CYB5R3--NDUFA6
starfusion
AL669831.4--SEPTIN14
starfusion
MANBA--AC098487.1
starfusion
ARMCX2--BTK
starfusion
arriba
TLK2--FAM157A
starfusion
AGAP1--SH3BP4
starfusion
TLK2P1--AC110079.1
starfusion
TXNRD2--GNB1L
arriba
SLCO1B3--SLCO1B7
arriba
TVP23C--CDRT4
arriba
UPF1--AC011447.3
arriba
CRYZL2P--SEC16B
arriba

  0%|          | 0/14 [00:00<?, ?it/s]
Processing EIF3E--RSPO2:   0%|          | 0/14 [00:00<?, ?it/s]
Processing EIF3E--RSPO2:   7%|▋         | 1/14 [00:00<00:01,  9.26it/s]
Processing CCDC6--RET:   7%|▋         | 1/14 [00:00<00:01,  9.26it/s]  
Processing CCDC6--RET:  14%|█▍        | 2/14 [00:00<00:01,  9.48it/s]
Processing CYB5R3--NDUFA6:  14%|█▍        | 2/14 [00:00<00:01,  9.48it/s]
Processing CYB5R3--NDUFA6:  21%|██▏       | 3/14 [00:00<00:01,  9.56it/s]
Processing AL669831.4--SEPTIN14:  21%|██▏       | 3/14 [00:00<00:01,  9.56it/s]
Processing AL669831.4--SEPTIN14:  29%|██▊       | 4/14 [00:00<00:01,  9.60it/s]
Processing MANBA--AC098487.1:  29%|██▊       | 4/14 [00:00<00:01,  9.60it/s]   
Processing MANBA--AC098487.1:  36%|███▌      | 5/14 [00:00<00:00,  9.62it/s]
Processing ARMCX2--BTK:  36%|███▌      | 5/14 [00:00<00:00,  9.62it/s]      
Processing ARMCX2--BTK:  43%|████▎     | 6/14 [00:00<00:00,  9.63it/s]
Processing TLK2--FAM157A:  43%|████▎     | 6/14 [00:00<00:00,  9.63it/s]
Processing TLK2--FAM157A:  50%|█████     | 7/14 [00:00<00:00,  9.63it/s]
Processing AGAP1--SH3BP4:  50%|█████     | 7/14 [00:00<00:00,  9.63it/s]
Processing AGAP1--SH3BP4:  57%|█████▋    | 8/14 [00:00<00:00,  9.64it/s]
Processing TLK2P1--AC110079.1:  57%|█████▋    | 8/14 [00:00<00:00,  9.64it/s]
Processing TLK2P1--AC110079.1:  64%|██████▍   | 9/14 [00:00<00:00,  9.64it/s]
Processing TXNRD2--GNB1L:  64%|██████▍   | 9/14 [00:00<00:00,  9.64it/s]     
Processing TXNRD2--GNB1L:  71%|███████▏  | 10/14 [00:01<00:00,  9.65it/s]
Processing SLCO1B3--SLCO1B7:  71%|███████▏  | 10/14 [00:01<00:00,  9.65it/s]
Processing SLCO1B3--SLCO1B7:  79%|███████▊  | 11/14 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  79%|███████▊  | 11/14 [00:01<00:00,  9.65it/s]   
Processing TVP23C--CDRT4:  86%|████████▌ | 12/14 [00:01<00:00,  9.64it/s]
Processing UPF1--AC011447.3:  86%|████████▌ | 12/14 [00:01<00:00,  9.64it/s]
Processing UPF1--AC011447.3:  93%|█████████▎| 13/14 [00:01<00:00,  9.63it/s]
Processing CRYZL2P--SEC16B:  93%|█████████▎| 13/14 [00:01<00:00,  9.63it/s] 
Processing CRYZL2P--SEC16B: 100%|██████████| 14/14 [00:01<00:00,  9.63it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 14/14 [00:01<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory