Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/8235d0c6261eb378b1fd038136b06d/tih_rna_sample_00479_B23WHTKLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/bb4c0986e13bea56b6ea6bcce79f05/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/bb4c0986e13bea56b6ea6bcce79f05/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory