Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/032f064747cea8d9a92856ad5bacbc/tih_rna_sample_00473_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/c6063408dd9217435ba945a9edfa59/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/c6063408dd9217435ba945a9edfa59/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory