Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/95ec88a9ce11301a20d4ffcb5030a5/659_ciZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/d23339b8a327057c4d8e619ae64e63/659_ciZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/40198f3e7514d2a306357112b0e684/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/40198f3e7514d2a306357112b0e684/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_ciZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (15163858) splicing reads. 247068 splicing junctions. 178652 known splicing junctions. 68416 novel splicing junctions.
sampling 10% (30327717) splicing reads. 282549 splicing junctions. 186737 known splicing junctions. 95812 novel splicing junctions.
sampling 15% (45491576) splicing reads. 301007 splicing junctions. 190176 known splicing junctions. 110831 novel splicing junctions.
sampling 20% (60655435) splicing reads. 312575 splicing junctions. 192125 known splicing junctions. 120450 novel splicing junctions.
sampling 25% (75819294) splicing reads. 320446 splicing junctions. 193345 known splicing junctions. 127101 novel splicing junctions.
sampling 30% (90983153) splicing reads. 325986 splicing junctions. 194181 known splicing junctions. 131805 novel splicing junctions.
sampling 35% (106147012) splicing reads. 330409 splicing junctions. 194843 known splicing junctions. 135566 novel splicing junctions.
sampling 40% (121310871) splicing reads. 333820 splicing junctions. 195356 known splicing junctions. 138464 novel splicing junctions.
sampling 45% (136474730) splicing reads. 336541 splicing junctions. 195713 known splicing junctions. 140828 novel splicing junctions.
sampling 50% (151638589) splicing reads. 338796 splicing junctions. 196009 known splicing junctions. 142787 novel splicing junctions.
sampling 55% (166802448) splicing reads. 340697 splicing junctions. 196257 known splicing junctions. 144440 novel splicing junctions.
sampling 60% (181966307) splicing reads. 342325 splicing junctions. 196473 known splicing junctions. 145852 novel splicing junctions.
sampling 65% (197130166) splicing reads. 343729 splicing junctions. 196644 known splicing junctions. 147085 novel splicing junctions.
sampling 70% (212294025) splicing reads. 344882 splicing junctions. 196782 known splicing junctions. 148100 novel splicing junctions.
sampling 75% (227457884) splicing reads. 345778 splicing junctions. 196890 known splicing junctions. 148888 novel splicing junctions.
sampling 80% (242621743) splicing reads. 346531 splicing junctions. 196977 known splicing junctions. 149554 novel splicing junctions.
sampling 85% (257785602) splicing reads. 347159 splicing junctions. 197051 known splicing junctions. 150108 novel splicing junctions.
sampling 90% (272949461) splicing reads. 347703 splicing junctions. 197113 known splicing junctions. 150590 novel splicing junctions.
sampling 95% (288113320) splicing reads. 348085 splicing junctions. 197169 known splicing junctions. 150916 novel splicing junctions.
sampling 100% (303277179) splicing reads. 348313 splicing junctions. 197198 known splicing junctions. 151115 novel splicing junctions.
null device 
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