Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/2ca22f4aedc31498b4a2d8156b8cf6/tih_rna_sample_00461_B23WHTKLT4_1_1.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/d17bc05865827a25d72394a5105ebd/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/d17bc05865827a25d72394a5105ebd/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/86cc106171759ea7c04547512ced58/tih_rna_sample_00461_B23WHTKLT4_1.Chimeric.out.junction
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/2ca22f4aedc31498b4a2d8156b8cf6/tih_rna_sample_00461_B23WHTKLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.eWo85vVB5x/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary
-sample contains 50612085 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir -J /tmp/nxf.eWo85vVB5x/tih_rna_sample_00461_B23WHTKLT4_1.Chimeric.out.junction -O /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.eWo85vVB5x/tih_rna_sample_00461_B23WHTKLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
[10000], rate=46153.85/min
[20000], rate=50000.00/min
[30000], rate=58064.52/min
[40000], rate=63157.89/min
[50000], rate=63829.79/min
[60000], rate=62068.97/min
[70000], rate=61764.71/min
[80000], rate=64864.86/min
[90000], rate=68354.43/min
[100000], rate=68965.52/min
[110000], rate=67346.94/min
[120000], rate=64864.86/min
[130000], rate=63414.63/min
[140000], rate=62686.57/min
[150000], rate=62937.06/min
[160000], rate=64429.53/min
[170000], rate=63750.00/min
[180000], rate=61363.64/min
[190000], rate=60638.30/min
[200000], rate=60301.51/min
[210000], rate=60287.08/min
[220000], rate=61395.35/min
[230000], rate=62727.27/min
[240000], rate=63436.12/min
[250000], rate=62761.51/min
[260000], rate=62400.00/min
[270000], rate=62790.70/min
[280000], rate=62453.53/min
[290000], rate=63043.48/min
[300000], rate=64056.94/min
[310000], rate=64583.33/min
[320000], rate=64000.00/min
[330000], rate=63258.79/min
[340000], rate=63354.04/min
[350000], rate=63444.11/min
[360000], rate=63905.33/min
[370000], rate=63610.32/min
[380000], rate=63157.89/min
[390000], rate=62903.23/min
[400000], rate=62827.23/min
[410000], rate=63239.07/min
[420000], rate=63797.47/min -building interval tree based on /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
[10000], rate=42857.14/min
[20000], rate=48000.00/min
[30000], rate=50000.00/min
[40000], rate=53333.33/min
[50000], rate=56603.77/min
[60000], rate=58064.52/min
[70000], rate=60000.00/min
[80000], rate=64000.00/min
[90000], rate=64285.71/min
[100000], rate=58252.43/min
[110000], rate=55462.18/min
[120000], rate=52941.18/min
[130000], rate=51315.79/min
[140000], rate=50299.40/min
[150000], rate=50561.80/min
[160000], rate=50526.32/min
[170000], rate=51515.15/min
[180000], rate=53201.97/min
[190000], rate=53521.13/min
[200000], rate=54298.64/min
[210000], rate=55021.83/min
[220000], rate=55932.20/min
[230000], rate=57261.41/min
[240000], rate=59016.39/min
[250000], rate=60483.87/min
[260000], rate=62151.39/min
[270000], rate=63281.25/min
[280000], rate=64615.38/min
[290000], rate=65909.09/min
[300000], rate=66914.50/min
[310000], rate=67148.01/min
[320000], rate=67132.87/min
[330000], rate=67576.79/min
[340000], rate=67774.09/min
[350000], rate=66455.70/min
[360000], rate=64670.66/min
[370000], rate=62889.52/min
[380000], rate=62125.34/min
[390000], rate=62068.97/min
[400000], rate=61855.67/min
[410000], rate=62121.21/min
[420000], rate=62376.24/min -building interval tree based on /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
[10000], rate=85714.29/min
[20000], rate=100000.00/min
[30000], rate=94736.84/min
[40000], rate=104347.83/min
[50000], rate=93750.00/min
[60000], rate=90000.00/min
[70000], rate=91304.35/min
[80000], rate=94117.65/min
[90000], rate=88524.59/min
[100000], rate=86956.52/min
[110000], rate=86842.11/min
[120000], rate=87804.88/min
[130000], rate=81250.00/min
[140000], rate=77064.22/min
[150000], rate=73170.73/min
[160000], rate=70588.24/min
[170000], rate=68918.92/min
[180000], rate=67500.00/min
[190000], rate=66279.07/min
[200000], rate=64864.86/min
[210000], rate=63959.39/min
[220000], rate=63461.54/min
[230000], rate=63302.75/min
[240000], rate=64285.71/min
[250000], rate=65217.39/min
[260000], rate=64197.53/min
[270000], rate=62068.97/min
[280000], rate=60649.82/min
[290000], rate=59793.81/min
[300000], rate=59210.53/min
[310000], rate=58307.21/min
[320000], rate=57831.33/min
[330000], rate=57391.30/min
[340000], rate=57142.86/min
[350000], rate=57220.71/min
[360000], rate=57754.01/min
[370000], rate=58267.72/min
[380000], rate=58611.83/min
[390000], rate=59090.91/min
[400000], rate=58823.53/min
[410000], rate=57882.35/min
[420000], rate=56884.88/min -building interval tree based on /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
[10000], rate=150000.00/min
[20000], rate=150000.00/min
[30000], rate=163636.36/min
[40000], rate=150000.00/min
[50000], rate=157894.74/min
[60000], rate=156521.74/min
[70000], rate=120000.00/min
[80000], rate=90566.04/min
[90000], rate=73972.60/min
[100000], rate=67415.73/min
[110000], rate=61111.11/min
[120000], rate=56250.00/min
[130000], rate=53424.66/min
[140000], rate=52173.91/min
[150000], rate=52023.12/min
[160000], rate=51891.89/min
[170000], rate=51256.28/min
[180000], rate=50943.40/min
[190000], rate=50892.86/min
[200000], rate=51502.15/min
[210000], rate=52500.00/min
[220000], rate=53225.81/min
[230000], rate=53488.37/min
[240000], rate=54135.34/min
[250000], rate=54744.53/min
[260000], rate=55516.01/min
[270000], rate=56643.36/min
[280000], rate=56000.00/min
[290000], rate=55063.29/min
[300000], rate=54380.66/min
[310000], rate=54069.77/min
[320000], rate=53781.51/min
[330000], rate=53804.35/min
[340000], rate=53968.25/min
[350000], rate=54263.57/min
[360000], rate=54683.54/min
[370000], rate=53365.38/min
[380000], rate=52777.78/min
[390000], rate=52466.37/min
[400000], rate=52173.91/min
[410000], rate=52008.46/min
[420000], rate=52282.16/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir --filt_file /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
3000000.00 reads per min processed...
3000000.00 reads per min processed...
3000000.00 reads per min processed...
2727272.73 reads per min processed...
2769230.77 reads per min processed...
2800000.00 reads per min processed...
2823529.41 reads per min processed...
2842105.26 reads per min processed...
2857142.86 reads per min processed...
2869565.22 reads per min processed...
2880000.00 reads per min processed...
2888888.89 reads per min processed...
2800000.00 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.eWo85vVB5x/tih_rna_sample_00461_B23WHTKLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -21112.976828
EM: Round [1] log likelihood: -21105.087398
EM: Round [2] log likelihood: -21101.210862
EM: Round [3] log likelihood: -21099.090534
EM: Round [4] log likelihood: -21097.879417
EM: Round [5] log likelihood: -21097.166869
EM: Round [6] log likelihood: -21096.733140
EM: Round [7] log likelihood: -21096.458498
EM: Round [8] log likelihood: -21096.277480
EM: Round [9] log likelihood: -21096.153717
EM: Round [10] log likelihood: -21096.066387
EM: Round [11] log likelihood: -21096.003116
EM: Round [12] log likelihood: -21095.956251
EM: Round [13] log likelihood: -21095.920883
EM: Round [14] log likelihood: -21095.893758
EM: Round [15] log likelihood: -21095.872659
EM: Round [16] log likelihood: -21095.856038
EM: Round [17] log likelihood: -21095.842794
EM: Round [18] log likelihood: -21095.832132
EM: Round [19] log likelihood: -21095.823468
EM: Round [20] log likelihood: -21095.816367
EM: Round [21] log likelihood: -21095.810503
EM: Round [22] log likelihood: -21095.805628
EM: Round [23] log likelihood: -21095.801549
EM: Round [24] log likelihood: -21095.798120
EM: Round [25] log likelihood: -21095.795222
EM: Round [26] log likelihood: -21095.792764
EM: Round [27] log likelihood: -21095.790672
EM: Round [28] log likelihood: -21095.788885
EM: Round [29] log likelihood: -21095.787356
EM: Round [30] log likelihood: -21095.786043
EM: Round [31] log likelihood: -21095.784915
EM: Round [32] log likelihood: -21095.783944
EM: Round [33] log likelihood: -21095.783106
EM: Round [34] log likelihood: -21095.782383
EM: Round [35] log likelihood: -21095.781758
EM: Round [36] log likelihood: -21095.781218
EM: Round [37] log likelihood: -21095.780750
EM: Round [38] log likelihood: -21095.780345
EM: Round [39] log likelihood: -21095.779994
EM: Round [40] log likelihood: -21095.779689
EM: Round [41] log likelihood: -21095.779425
EM: Round [42] log likelihood: -21095.779196
EM: Round [43] log likelihood: -21095.778997
EM: Round [44] log likelihood: -21095.778824
EM: Round [45] log likelihood: -21095.778674
EM: Round [46] log likelihood: -21095.778544
EM: Round [47] log likelihood: -21095.778431
EM: Round [48] log likelihood: -21095.778332
EM: Stopping iterations at round 48 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -21102.371396
EM: Round [1] log likelihood: -21095.250864
EM: Round [2] log likelihood: -21091.789651
EM: Round [3] log likelihood: -21089.901710
EM: Round [4] log likelihood: -21088.817833
EM: Round [5] log likelihood: -21088.173246
EM: Round [6] log likelihood: -21087.775496
EM: Round [7] log likelihood: -21087.520095
EM: Round [8] log likelihood: -21087.349634
EM: Round [9] log likelihood: -21087.231870
EM: Round [10] log likelihood: -21087.148086
EM: Round [11] log likelihood: -21087.086989
EM: Round [12] log likelihood: -21087.041503
EM: Round [13] log likelihood: -21087.007031
EM: Round [14] log likelihood: -21086.980499
EM: Round [15] log likelihood: -21086.959797
EM: Round [16] log likelihood: -21086.943443
EM: Round [17] log likelihood: -21086.930378
EM: Round [18] log likelihood: -21086.919834
EM: Round [19] log likelihood: -21086.911247
EM: Round [20] log likelihood: -21086.904194
EM: Round [21] log likelihood: -21086.898359
EM: Round [22] log likelihood: -21086.893499
EM: Round [23] log likelihood: -21086.889427
EM: Round [24] log likelihood: -21086.885998
EM: Round [25] log likelihood: -21086.883096
EM: Round [26] log likelihood: -21086.880633
EM: Round [27] log likelihood: -21086.878533
EM: Round [28] log likelihood: -21086.876738
EM: Round [29] log likelihood: -21086.875201
EM: Round [30] log likelihood: -21086.873881
EM: Round [31] log likelihood: -21086.872745
EM: Round [32] log likelihood: -21086.871767
EM: Round [33] log likelihood: -21086.870923
EM: Round [34] log likelihood: -21086.870194
EM: Round [35] log likelihood: -21086.869563
EM: Round [36] log likelihood: -21086.869018
EM: Round [37] log likelihood: -21086.868546
EM: Round [38] log likelihood: -21086.868136
EM: Round [39] log likelihood: -21086.867782
EM: Round [40] log likelihood: -21086.867474
EM: Round [41] log likelihood: -21086.867207
EM: Round [42] log likelihood: -21086.866975
EM: Round [43] log likelihood: -21086.866774
EM: Round [44] log likelihood: -21086.866599
EM: Round [45] log likelihood: -21086.866448
EM: Round [46] log likelihood: -21086.866316
EM: Round [47] log likelihood: -21086.866201
EM: Round [48] log likelihood: -21086.866101
EM: Stopping iterations at round 48 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 50612085 > /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir > /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir --annotate /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir
-done, see /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 466, filtered: 2511)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.eWo85vVB5x/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.eWo85vVB5x/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000199218.1]
WARNING, no entry stored in dbm for [ENSG00000201428.1]
WARNING, no entry stored in dbm for [ENSG00000286784.1]
WARNING, no entry stored in dbm for [ENSG00000245750.10]
WARNING, no entry stored in dbm for [ENSG00000249859.12]
WARNING, no entry stored in dbm for [ENSG00000202512.1]
WARNING, no entry stored in dbm for [ENSG00000222386.1]
WARNING, no entry stored in dbm for [ENSG00000223006.1]
WARNING, no entry stored in dbm for [ENSG00000201428.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
WARNING, no entry stored in dbm for [ENSG00000248455.6]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000281404.2]
WARNING, no entry stored in dbm for [ENSG00000286162.2]
WARNING, no entry stored in dbm for [ENSG00000285911.1]
WARNING, no entry stored in dbm for [ENSG00000260126.2]
WARNING, no entry stored in dbm for [ENSG00000274712.2]
WARNING, no entry stored in dbm for [ENSG00000267254.7]
WARNING, no entry stored in dbm for [ENSG00000225178.5]
WARNING, no entry stored in dbm for [ENSG00000262693.1]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000213062.5]
WARNING, no entry stored in dbm for [ENSG00000265735.2]
WARNING, no entry stored in dbm for [ENSG00000263740.2]
WARNING, no entry stored in dbm for [ENSG00000240869.3]
WARNING, no entry stored in dbm for [ENSG00000276168.1]
WARNING, no entry stored in dbm for [ENSG00000282885.2]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000251504.1]
WARNING, no entry stored in dbm for [ENSG00000233178.7]
WARNING, no entry stored in dbm for [ENSG00000230061.2]
WARNING, no entry stored in dbm for [ENSG00000170919.16]
WARNING, no entry stored in dbm for [ENSG00000254543.1]
WARNING, no entry stored in dbm for [ENSG00000259977.1]
WARNING, no entry stored in dbm for [ENSG00000260796.1]
WARNING, no entry stored in dbm for [ENSG00000286452.1]
WARNING, no entry stored in dbm for [ENSG00000279537.1]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000276721.1]
WARNING, no entry stored in dbm for [ENSG00000223553.6]
WARNING, no entry stored in dbm for [ENSG00000225689.2]
WARNING, no entry stored in dbm for [ENSG00000218725.2]
WARNING, no entry stored in dbm for [ENSG00000215444.2]
WARNING, no entry stored in dbm for [ENSG00000253634.3]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000262117.5]
WARNING, no entry stored in dbm for [ENSG00000184139.8]
WARNING, no entry stored in dbm for [ENSG00000215869.4]
WARNING, no entry stored in dbm for [ENSG00000280171.1]
WARNING, no entry stored in dbm for [ENSG00000285533.2]
WARNING, no entry stored in dbm for [ENSG00000264538.6]
WARNING, no entry stored in dbm for [ENSG00000231503.4]
WARNING, no entry stored in dbm for [ENSG00000229321.2]
WARNING, no entry stored in dbm for [ENSG00000260496.3]
WARNING, no entry stored in dbm for [ENSG00000254539.1]
WARNING, no entry stored in dbm for [ENSG00000261208.1]
WARNING, no entry stored in dbm for [ENSG00000173209.23]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000248008.3]
WARNING, no entry stored in dbm for [ENSG00000265802.2]
WARNING, no entry stored in dbm for [ENSG00000265802.2]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [ENSG00000267278.6]
WARNING, no entry stored in dbm for [ENSG00000275620.1]
WARNING, no entry stored in dbm for [ENSG00000248323.7]
WARNING, no entry stored in dbm for [ENSG00000173727.12]
WARNING, no entry stored in dbm for [ENSG00000261008.7]
WARNING, no entry stored in dbm for [ENSG00000238113.7]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000286610.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000254514.1]
WARNING, no entry stored in dbm for [ENSG00000225064.1]
WARNING, no entry stored in dbm for [ENSG00000203865.11]
WARNING, no entry stored in dbm for [ENSG00000287784.1]
WARNING, no entry stored in dbm for [ENSG00000261226.1]
WARNING, no entry stored in dbm for [ENSG00000286784.1]
WARNING, no entry stored in dbm for [ENSG00000244026.6]
WARNING, no entry stored in dbm for [ENSG00000243572.1]
WARNING, no entry stored in dbm for [ENSG00000215908.10]
WARNING, no entry stored in dbm for [ENSG00000230335.1]
WARNING, no entry stored in dbm for [ENSG00000218089.1]
WARNING, no entry stored in dbm for [ENSG00000230768.9]
WARNING, no entry stored in dbm for [ENSG00000231252.3]
WARNING, no entry stored in dbm for [ENSG00000286071.1]
WARNING, no entry stored in dbm for [ENSG00000286622.1]
WARNING, no entry stored in dbm for [ENSG00000279066.1]
WARNING, no entry stored in dbm for [ENSG00000248740.6]
WARNING, no entry stored in dbm for [ENSG00000286162.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000231069.1]
WARNING, no entry stored in dbm for [ENSG00000286475.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000204177.10]
WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000287126.1]
WARNING, no entry stored in dbm for [ENSG00000254560.6]
WARNING, no entry stored in dbm for [ENSG00000249859.12]
WARNING, no entry stored in dbm for [ENSG00000261404.7]
WARNING, no entry stored in dbm for [ENSG00000229498.1]
WARNING, no entry stored in dbm for [ENSG00000225879.2]
WARNING, no entry stored in dbm for [ENSG00000224251.6]
WARNING, no entry stored in dbm for [ENSG00000165121.11]
WARNING, no entry stored in dbm for [ENSG00000263740.2]
WARNING, no entry stored in dbm for [ENSG00000165121.11]
WARNING, no entry stored in dbm for [ENSG00000282885.2]
WARNING, no entry stored in dbm for [ENSG00000259087.5]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000260126.2]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000187172.15]
WARNING, no entry stored in dbm for [ENSG00000285822.1]
WARNING, no entry stored in dbm for [ENSG00000258590.5]
WARNING, no entry stored in dbm for [ENSG00000248583.1]
WARNING, no entry stored in dbm for [ENSG00000278931.1]
WARNING, no entry stored in dbm for [ENSG00000284428.1]
WARNING, no entry stored in dbm for [ENSG00000250546.6]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000240418.1]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000283132.1]
WARNING, no entry stored in dbm for [ENSG00000279516.2]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000286134.2]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
* STAR-Fusion complete. See output: /tmp/nxf.eWo85vVB5x/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)