[W::hts_idx_load3] The index file is older than the data file: 659_ciJ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	321435729
Known Splicing Events:	316257571
Partial Novel Splicing Events:	1914986
Novel Splicing Events:	3114999
Filtered Splicing Events:	148173

Total splicing  Junctions:	467606
Known Splicing Junctions:	257780
Partial Novel Splicing Junctions:	117180
Novel Splicing Junctions:	92646

===================================================================
Create BED file ...
Create Interact file ...