Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/a16369d4f9602cc89265d7b34ba17c/659_ciJ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/6fb8ef780865c3d88239b108874389/659_ciJ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/9aa1abed1723bd68db40db55a494e6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/9aa1abed1723bd68db40db55a494e6/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 321435729
[W::hts_idx_load3] The index file is older than the data file: 659_ciJ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	321435729
Known Splicing Events:	316257571
Partial Novel Splicing Events:	1914986
Novel Splicing Events:	3114999
Filtered Splicing Events:	148173

Total splicing  Junctions:	467606
Known Splicing Junctions:	257780
Partial Novel Splicing Junctions:	117180
Novel Splicing Junctions:	92646

===================================================================
Create BED file ...
Create Interact file ...