Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/1f3f72c2a759df8eac19814bef814a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/ce86dc1559a772349a6e040210fa6c/tih_rna_sample_00089_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/1f3f72c2a759df8eac19814bef814a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/40f9967b343aa3bf76f99db2fe3657/tih_rna_sample_00089_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 222196895
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00089_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	222196895
Known Splicing Events:	220227557
Partial Novel Splicing Events:	1146002
Novel Splicing Events:	741055
Filtered Splicing Events:	82281

Total splicing  Junctions:	460397
Known Splicing Junctions:	250655
Partial Novel Splicing Junctions:	115798
Novel Splicing Junctions:	93944

===================================================================
Create BED file ...
Create Interact file ...