Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/fa3fc5236d3a3816ee55f42d09a2e2/659_cRa-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/7f2edd63086c127e55725b9f41ef50/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/7f2edd63086c127e55725b9f41ef50/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 590000000 records
paired = 293154424
unpaired = 4309913
MERGED PAIRED END READS = 293154424
MATES PROCESSED = 590618761
TOTAL READS     = 297464337
DISTINCT READS  = 6.98777e+07
DISTINCT COUNTS = 2430
MAX COUNT       = 752542
COUNTS OF 1     = 1.90614e+07
MAX TERMS       = 100
OBSERVED COUNTS (752543)
1	19061426
2	13399675
3	10376037
4	7727479
5	5547798
6	3880478
7	2680487
8	1845325
9	1276467
10	895133
11	635785
12	460509
13	341008
14	257796
15	197953
16	154175
17	123276
18	100008
19	82303
20	68840
21	58280
22	49824
23	43087
24	37924
25	33643
26	29831
27	26890
28	24215
29	21811
30	19791
31	18024
32	16797
33	15175
34	14220
35	13078
36	12256
37	11371
38	10791
39	9959
40	9468
41	8893
42	8402
43	7880
44	7470
45	6991
46	6590
47	6254
48	6081
49	5674
50	5399
51	5300
52	5103
53	4925
54	4747
55	4523
56	4248
57	4140
58	3798
59	3839
60	3603
61	3549
62	3386
63	3229
64	3216
65	3085
66	2980
67	2854
68	2711
69	2654
70	2642
71	2493
72	2483
73	2426
74	2261
75	2300
76	2130
77	2110
78	1998
79	2027
80	1899
81	1813
82	1757
83	1802
84	1726
85	1635
86	1623
87	1629
88	1533
89	1605
90	1494
91	1433
92	1473
93	1419
94	1381
95	1293
96	1322
97	1251
98	1194
99	1152
100	1149
101	1135
102	1153
103	1178
104	1074
105	1043
106	1078
107	1081
108	930
109	967
110	969
111	974
112	928
113	906
114	914
115	924
116	876
117	861
118	798
119	761
120	816
121	778
122	712
123	787
124	679
125	719
126	689
127	718
128	683
129	730
130	644
131	686
132	649
133	622
134	611
135	592
136	620
137	616
138	588
139	630
140	594
141	567
142	573
143	565
144	527
145	538
146	508
147	508
148	453
149	493
150	512
151	517
152	466
153	457
154	473
155	449
156	403
157	455
158	431
159	435
160	435
161	414
162	414
163	376
164	440
165	426
166	395
167	400
168	378
169	358
170	357
171	361
172	359
173	327
174	351
175	362
176	358
177	347
178	311
179	335
180	352
181	349
182	324
183	336
184	335
185	289
186	317
187	309
188	303
189	291
190	298
191	333
192	281
193	249
194	289
195	282
196	260
197	293
198	274
199	253
200	249
201	273
202	250
203	228
204	254
205	258
206	257
207	235
208	250
209	237
210	231
211	227
212	258
213	235
214	210
215	237
216	222
217	213
218	215
219	222
220	211
221	196
222	210
223	218
224	215
225	187
226	205
227	225
228	200
229	214
230	185
231	206
232	183
233	184
234	183
235	169
236	156
237	192
238	161
239	177
240	180
241	171
242	152
243	152
244	170
245	170
246	146
247	150
248	156
249	168
250	137
251	150
252	157
253	173
254	156
255	149
256	137
257	146
258	166
259	144
260	134
261	158
262	143
263	115
264	141
265	158
266	155
267	112
268	130
269	126
270	130
271	136
272	150
273	141
274	147
275	112
276	122
277	109
278	148
279	132
280	124
281	140
282	113
283	125
284	111
285	121
286	125
287	111
288	102
289	118
290	121
291	107
292	118
293	103
294	109
295	112
296	99
297	103
298	89
299	106
300	112
301	111
302	119
303	91
304	101
305	100
306	113
307	102
308	103
309	89
310	85
311	112
312	83
313	98
314	97
315	108
316	93
317	99
318	98
319	87
320	88
321	96
322	72
323	111
324	80
325	91
326	84
327	84
328	77
329	99
330	68
331	80
332	90
333	110
334	80
335	96
336	86
337	66
338	83
339	71
340	84
341	74
342	75
343	69
344	78
345	69
346	96
347	77
348	70
349	87
350	88
351	68
352	76
353	70
354	71
355	69
356	62
357	53
358	83
359	71
360	54
361	57
362	66
363	64
364	60
365	53
366	80
367	68
368	60
369	57
370	49
371	60
372	62
373	60
374	65
375	47
376	55
377	69
378	82
379	53
380	51
381	59
382	66
383	62
384	65
385	44
386	61
387	67
388	47
389	70
390	45
391	56
392	45
393	55
394	54
395	57
396	57
397	48
398	60
399	53
400	58
401	41
402	50
403	53
404	47
405	53
406	58
407	52
408	55
409	45
410	51
411	34
412	51
413	40
414	55
415	50
416	52
417	43
418	43
419	48
420	39
421	46
422	49
423	45
424	46
425	40
426	41
427	55
428	47
429	62
430	41
431	41
432	41
433	41
434	40
435	44
436	37
437	45
438	25
439	41
440	43
441	38
442	40
443	38
444	42
445	37
446	35
447	43
448	35
449	50
450	50
451	41
452	40
453	34
454	41
455	40
456	36
457	42
458	40
459	49
460	47
461	34
462	44
463	39
464	39
465	31
466	38
467	35
468	40
469	44
470	37
471	40
472	31
473	29
474	33
475	31
476	32
477	24
478	31
479	43
480	33
481	31
482	42
483	33
484	31
485	25
486	29
487	48
488	30
489	35
490	35
491	42
492	31
493	36
494	30
495	27
496	28
497	34
498	25
499	25
500	27
501	40
502	40
503	30
504	31
505	38
506	41
507	33
508	22
509	26
510	31
511	30
512	34
513	26
514	29
515	29
516	18
517	24
518	24
519	26
520	21
521	31
522	41
523	30
524	29
525	31
526	30
527	37
528	31
529	23
530	26
531	23
532	27
533	23
534	36
535	29
536	29
537	23
538	23
539	31
540	30
541	25
542	21
543	14
544	33
545	26
546	28
547	23
548	26
549	30
550	24
551	27
552	21
553	22
554	25
555	23
556	33
557	20
558	27
559	20
560	24
561	16
562	20
563	23
564	19
565	15
566	19
567	24
568	29
569	15
570	30
571	18
572	22
573	25
574	22
575	20
576	17
577	15
578	23
579	17
580	21
581	15
582	19
583	22
584	17
585	27
586	25
587	27
588	16
589	19
590	10
591	19
592	15
593	15
594	17
595	22
596	15
597	16
598	13
599	14
600	12
601	25
602	19
603	16
604	14
605	25
606	22
607	29
608	16
609	15
610	18
611	19
612	21
613	14
614	18
615	13
616	21
617	25
618	22
619	21
620	17
621	14
622	12
623	19
624	18
625	14
626	18
627	14
628	22
629	17
630	17
631	24
632	16
633	19
634	22
635	12
636	14
637	9
638	22
639	22
640	22
641	16
642	16
643	17
644	13
645	12
646	13
647	13
648	12
649	13
650	14
651	18
652	24
653	18
654	24
655	9
656	21
657	24
658	12
659	15
660	10
661	14
662	14
663	16
664	17
665	15
666	17
667	19
668	16
669	10
670	19
671	5
672	13
673	13
674	18
675	14
676	12
677	14
678	19
679	14
680	15
681	9
682	16
683	18
684	24
685	13
686	13
687	17
688	17
689	13
690	20
691	18
692	10
693	12
694	17
695	14
696	16
697	18
698	11
699	11
700	10
701	12
702	9
703	9
704	15
705	12
706	16
707	13
708	13
709	14
710	10
711	13
712	12
713	21
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717	11
718	18
719	7
720	19
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722	9
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725	12
726	12
727	20
728	14
729	10
730	12
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732	9
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737	7
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740	15
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744	10
745	11
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748	12
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750	13
751	10
752	13
753	14
754	14
755	9
756	8
757	7
758	12
759	5
760	8
761	14
762	11
763	9
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765	12
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767	9
768	9
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770	11
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772	10
773	10
774	6
775	17
776	9
777	13
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780	15
781	10
782	14
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785	8
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790	4
791	6
792	8
793	8
794	10
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796	10
797	11
798	13
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800	8
801	4
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803	11
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806	15
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810	8
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812	11
813	7
814	11
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817	12
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820	12
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830	8
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832	11
833	8
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838	10
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840	11
841	10
842	6
843	10
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846	8
847	8
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850	11
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852	6
853	7
854	7
855	7
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857	13
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863	9
864	4
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866	11
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870	5
871	7
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874	8
875	12
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877	8
878	5
879	6
880	6
881	8
882	6
883	8
884	7
885	8
886	6
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888	4
889	5
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891	8
892	2
893	9
894	4
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896	7
897	9
898	11
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900	3
901	16
902	3
903	8
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912	6
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920	2
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924	8
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930	7
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937	9
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940	12
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950	3
951	3
952	4
953	7
954	11
955	8
956	7
957	13
958	4
959	6
960	8
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963	8
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967	4
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969	3
970	9
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978	7
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980	7
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987	5
988	2
989	7
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994	3
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996	5
997	7
998	6
1000	7
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1016	6
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1024	4
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1100	6
1101	5
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1121	4
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1177	4
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1200	4
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1301	3
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1371	1
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1471	2
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1500	2
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1700	1
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1733	1
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1736	3
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1738	1
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1744	1
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1749	1
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1788	1
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1796	1
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1800	1
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1818	3
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1825	2
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1862	1
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1885	2
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1891	4
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1894	2
1896	2
1899	2
1901	1
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1907	1
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1910	4
1912	1
1914	1
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1916	3
1917	1
1918	2
1921	1
1922	1
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1925	1
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1929	1
1930	2
1931	1
1932	1
1933	1
1934	2
1935	1
1941	1
1942	2
1945	1
1946	1
1947	2
1951	1
1952	2
1953	2
1954	1
1955	1
1958	2
1959	2
1960	2
1961	2
1963	3
1964	1
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1967	1
1968	2
1971	3
1973	1
1974	3
1975	2
1978	1
1979	2
1980	2
1984	1
1985	1
1986	1
1988	1
1989	4
1990	1
1991	2
1992	1
1994	2
1995	2
1997	1
1998	3
2000	2
2001	1
2003	1
2005	1
2007	1
2009	1
2010	1
2011	1
2015	1
2016	2
2018	1
2019	1
2020	1
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2022	2
2026	1
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2033	4
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2864	1
2879	1
2881	1
2896	1
2905	1
2906	1
2907	1
2908	1
2909	1
2912	1
2915	1
2923	1
2933	1
2938	1
2943	1
2946	1
2948	1
2949	1
2954	1
2966	1
2968	2
2977	1
2979	1
2990	1
2993	1
2995	1
3003	1
3007	1
3012	1
3017	2
3022	1
3030	1
3031	1
3036	1
3047	1
3053	1
3058	1
3060	2
3075	1
3096	1
3102	1
3105	1
3110	2
3111	1
3113	1
3116	1
3122	1
3125	1
3133	1
3137	1
3142	1
3145	1
3146	1
3152	1
3155	1
3157	1
3169	1
3172	1
3173	1
3190	1
3196	1
3202	1
3204	2
3221	1
3224	1
3226	2
3243	1
3260	1
3267	1
3273	1
3295	1
3298	1
3300	1
3312	1
3329	1
3351	1
3352	2
3354	1
3365	1
3367	1
3371	1
3379	1
3400	1
3408	1
3412	1
3418	1
3419	1
3445	1
3449	1
3453	1
3455	1
3457	1
3464	1
3465	1
3468	1
3471	1
3477	1
3488	1
3530	1
3564	1
3567	1
3568	1
3579	1
3592	1
3595	2
3603	1
3631	1
3639	1
3644	1
3655	1
3687	1
3691	1
3703	1
3711	1
3719	1
3724	1
3734	1
3735	1
3747	1
3751	1
3757	1
3760	1
3782	1
3784	2
3800	1
3808	1
3812	1
3813	1
3823	1
3836	1
3850	1
3864	1
3869	1
3890	1
3894	1
3895	1
3896	1
3918	1
3923	1
3925	1
3939	1
3955	1
3969	1
3976	1
3999	3
4027	1
4059	1
4066	1
4075	1
4103	1
4114	1
4120	1
4133	1
4136	1
4176	1
4189	1
4205	2
4207	1
4219	1
4222	1
4244	1
4249	1
4271	1
4279	1
4290	1
4291	1
4317	1
4320	1
4333	1
4347	1
4368	1
4372	2
4374	1
4378	1
4429	1
4447	1
4454	1
4484	1
4491	1
4501	1
4504	1
4532	1
4535	1
4541	1
4558	1
4574	1
4579	1
4587	1
4599	1
4608	1
4622	1
4631	1
4632	1
4641	1
4643	1
4659	1
4661	2
4695	1
4760	1
4764	1
4779	1
4836	1
4850	1
4862	1
4869	1
4875	1
4910	1
4956	1
4959	1
4965	1
4993	1
5009	1
5040	1
5044	1
5051	1
5066	1
5122	1
5127	1
5128	1
5170	1
5172	1
5191	1
5212	1
5216	1
5232	1
5275	1
5337	1
5384	1
5402	1
5451	1
5476	1
5530	1
5543	1
5547	1
5548	1
5564	1
5573	1
5576	1
5577	1
5643	1
5672	1
5748	1
5755	1
5784	1
5824	1
5843	1
5849	1
5904	1
5931	1
5943	1
6049	1
6053	1
6058	1
6061	1
6182	1
6220	1
6256	1
6334	1
6445	1
6561	1
6607	1
6631	1
6674	1
6675	1
6733	1
6936	1
6979	1
7004	1
7095	1
7138	1
7171	1
7173	1
7184	1
7247	1
7269	1
7342	1
7456	1
7644	1
8000	1
8108	1
8197	1
8210	1
8292	1
8422	1
8492	1
8834	1
9222	1
9241	1
9315	1
9357	1
9768	1
9955	1
10020	1
10114	1
10973	1
11141	1
11321	1
11947	1
11991	1
12067	1
12604	1
12908	1
13155	1
13236	1
13469	1
14024	1
14373	1
14723	1
15259	1
19282	1
22324	1
24816	1
48315	1
752542	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
............_................._.........................................
..............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]