Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/9718430fe20a6a2af4bd92330716eb/659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/708d33eb0ba367a6094ae2c52d245c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/708d33eb0ba367a6094ae2c52d245c/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_cIX-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_cIX-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:48:33.462 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:48:33 GMT 2026] MarkDuplicates --INPUT 659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_cIX-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_cIX-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:48:33 GMT 2026] Executing as ?@nf-69708d33eb0ba367a6094ae2c52d245c-e33b7-hjxmg on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:48:33 MarkDuplicates Start of doWork freeMemory: 105826800; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:48:33 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:48:33 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,628,366
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 2221 as yet unmatched pairs. 316 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:8,013,661
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 3770 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 3s. Last read position: chr1:11,925,738
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 6374 as yet unmatched pairs. 1198 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:16,367,296
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 7512 as yet unmatched pairs. 881 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:19,597,064
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 8675 as yet unmatched pairs. 653 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:21,874,484
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 10942 as yet unmatched pairs. 1345 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:23,961,722
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 11447 as yet unmatched pairs. 448 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:27,551,230
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 12798 as yet unmatched pairs. 431 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:31,691,197
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 15893 as yet unmatched pairs. 1894 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:35,192,707
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 15897 as yet unmatched pairs. 394 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:39,331,999
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 18367 as yet unmatched pairs. 1277 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:39,479,879
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 20828 as yet unmatched pairs. 2430 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:42,700,789
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 20363 as yet unmatched pairs. 343 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:46,035,574
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 22227 as yet unmatched pairs. 623 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:55,138,943
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 23242 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:77,739,355
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 24824 as yet unmatched pairs. 287 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:94,498,941
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 26150 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:109,923,464
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 27488 as yet unmatched pairs. 218 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:114,739,783
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 29272 as yet unmatched pairs. 708 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:119,953,625
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 31450 as yet unmatched pairs. 1473 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:144,435,301
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 31153 as yet unmatched pairs. 349 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:146,101,261
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 31737 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:147,954,336
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 32481 as yet unmatched pairs. 197 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:148,679,470
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 32813 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:149,851,327
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 33463 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:150,552,551
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 34848 as yet unmatched pairs. 328 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:150,823,190
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 36397 as yet unmatched pairs. 461 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:151,405,418
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 38213 as yet unmatched pairs. 722 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:152,312,852
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 39494 as yet unmatched pairs. 956 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:153,976,740
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 41737 as yet unmatched pairs. 1619 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:154,588,607
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 42699 as yet unmatched pairs. 1239 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:155,068,868
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 43286 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:155,481,157
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 44465 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:156,114,881
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 49416 as yet unmatched pairs. 3716 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:156,135,947
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 52601 as yet unmatched pairs. 4815 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:156,194,140
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 49634 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:156,658,586
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 53084 as yet unmatched pairs. 2136 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:156,677,121
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 56366 as yet unmatched pairs. 3325 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:159,781,157
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 54717 as yet unmatched pairs. 345 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:161,206,585
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 56380 as yet unmatched pairs. 568 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:164,821,537
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 61669 as yet unmatched pairs. 4571 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:170,726,264
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 61516 as yet unmatched pairs. 2912 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:174,988,754
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 60003 as yet unmatched pairs. 83 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:180,989,998
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 61679 as yet unmatched pairs. 344 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:183,630,545
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 63917 as yet unmatched pairs. 878 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:186,341,356
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 65655 as yet unmatched pairs. 1300 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:201,195,959
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 66488 as yet unmatched pairs. 866 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:201,485,299
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 77791 as yet unmatched pairs. 10542 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:201,900,511
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 69154 as yet unmatched pairs. 566 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:203,179,564
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 74530 as yet unmatched pairs. 4395 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:203,712,030
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 73434 as yet unmatched pairs. 1987 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:205,070,011
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 72805 as yet unmatched pairs. 22 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:207,337,353
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 80099 as yet unmatched pairs. 5928 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:214,657,369
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 75686 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:223,750,917
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 78939 as yet unmatched pairs. 2086 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:225,567,260
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 79012 as yet unmatched pairs. 903 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:227,735,158
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 79731 as yet unmatched pairs. 117 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:230,868,225
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 82901 as yet unmatched pairs. 1381 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:235,246,429
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 83980 as yet unmatched pairs. 342 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:243,545,585
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 86304 as yet unmatched pairs. 1361 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr1:246,850,267
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 86887 as yet unmatched pairs. 562 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:8,826,998
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 88347 as yet unmatched pairs. 88007 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:24,203,722
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 89272 as yet unmatched pairs. 88929 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:27,082,661
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 95921 as yet unmatched pairs. 95577 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:27,364,497
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 92949 as yet unmatched pairs. 92603 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:28,793,975
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 102086 as yet unmatched pairs. 101739 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:32,442,404
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 95992 as yet unmatched pairs. 95643 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 360262 as yet unmatched pairs. 83104 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 787297 as yet unmatched pairs. 62712 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:36,476,978
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 842156 as yet unmatched pairs. 60313 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:43,979,911
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 840631 as yet unmatched pairs. 58765 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:55,049,791
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 840693 as yet unmatched pairs. 58823 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:64,636,701
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 837387 as yet unmatched pairs. 55510 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:69,807,913
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 837018 as yet unmatched pairs. 55141 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:73,449,788
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 834735 as yet unmatched pairs. 52858 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 2s. Last read position: chr2:74,363,405
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 833673 as yet unmatched pairs. 51796 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:85,309,397
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 831788 as yet unmatched pairs. 49897 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:95,987,092
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 830743 as yet unmatched pairs. 48847 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:98,554,299
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 829106 as yet unmatched pairs. 47209 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:101,874,226
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 827738 as yet unmatched pairs. 45830 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:109,819,761
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 826302 as yet unmatched pairs. 44393 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:121,528,721
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 825149 as yet unmatched pairs. 43222 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:144,403,927
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 824135 as yet unmatched pairs. 42199 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:164,573,802
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 822098 as yet unmatched pairs. 40159 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:178,451,014
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 820622 as yet unmatched pairs. 38682 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:188,987,073
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 824159 as yet unmatched pairs. 42218 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 3s. Last read position: chr2:188,999,481
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 822910 as yet unmatched pairs. 40965 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr2:189,036,671
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 816391 as yet unmatched pairs. 34434 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:197,497,346
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 815023 as yet unmatched pairs. 33058 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:206,161,395
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 813661 as yet unmatched pairs. 31692 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:215,367,896
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 819845 as yet unmatched pairs. 37851 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,367
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 823981 as yet unmatched pairs. 41986 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,164
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 816982 as yet unmatched pairs. 34984 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,473
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 819826 as yet unmatched pairs. 37815 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:215,410,086
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 817474 as yet unmatched pairs. 35449 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:215,430,738
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 815231 as yet unmatched pairs. 33206 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:216,660,615
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 805888 as yet unmatched pairs. 23857 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:217,817,697
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 804171 as yet unmatched pairs. 22139 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 3s. Last read position: chr2:217,897,825
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 804081 as yet unmatched pairs. 22049 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:219,218,205
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 799468 as yet unmatched pairs. 17436 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:219,418,616
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 818583 as yet unmatched pairs. 36551 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:219,420,896
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 811258 as yet unmatched pairs. 29226 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:219,426,033
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 801557 as yet unmatched pairs. 19525 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:219,556,657
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 790879 as yet unmatched pairs. 8838 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr2:231,108,482
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 789873 as yet unmatched pairs. 7829 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr2:237,334,639
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 789629 as yet unmatched pairs. 7575 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr2:237,366,726
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 789011 as yet unmatched pairs. 6957 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:237,387,829
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 787196 as yet unmatched pairs. 5127 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:241,229,847
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 783679 as yet unmatched pairs. 1609 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr3:8,548,798
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 783112 as yet unmatched pairs. 43576 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:10,402,192
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 779861 as yet unmatched pairs. 40325 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:15,074,472
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 778247 as yet unmatched pairs. 38696 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:30,644,777
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 777378 as yet unmatched pairs. 37813 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:37,121,585
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 775456 as yet unmatched pairs. 35879 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:40,488,057
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 773793 as yet unmatched pairs. 34216 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:44,642,669
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 772036 as yet unmatched pairs. 32459 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:47,419,630
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 770894 as yet unmatched pairs. 31311 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:48,434,816
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 768976 as yet unmatched pairs. 29393 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:48,605,824
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 767962 as yet unmatched pairs. 28373 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:49,122,318
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 766184 as yet unmatched pairs. 26595 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:49,684,766
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 763979 as yet unmatched pairs. 24390 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr3:51,633,651
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 762238 as yet unmatched pairs. 22649 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:52,522,351
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 761049 as yet unmatched pairs. 21459 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:57,912,557
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 759681 as yet unmatched pairs. 20089 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:64,147,291
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 758698 as yet unmatched pairs. 19105 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:73,383,628
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 757097 as yet unmatched pairs. 17498 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:99,848,796
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 757996 as yet unmatched pairs. 18396 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:112,605,488
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 754147 as yet unmatched pairs. 14545 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr3:121,702,585
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 752494 as yet unmatched pairs. 12886 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:123,657,235
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 752787 as yet unmatched pairs. 13179 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:124,667,107
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 749811 as yet unmatched pairs. 10200 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:129,267,050
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 748435 as yet unmatched pairs. 8816 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:141,443,021
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 747067 as yet unmatched pairs. 7439 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr3:156,694,119
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 745220 as yet unmatched pairs. 5586 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr3:180,943,791
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 743896 as yet unmatched pairs. 4247 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:185,417,560
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 742163 as yet unmatched pairs. 2508 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr3:188,874,352
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 743233 as yet unmatched pairs. 3577 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr4:893,988
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 739524 as yet unmatched pairs. 25246 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:2,932,073
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 738380 as yet unmatched pairs. 24094 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:7,800,460
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 737654 as yet unmatched pairs. 23367 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:15,640,841
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 735117 as yet unmatched pairs. 20816 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:30,721,867
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 733236 as yet unmatched pairs. 18934 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:39,290,003
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 731677 as yet unmatched pairs. 17370 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:53,379,251
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 730366 as yet unmatched pairs. 16046 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 2s. Last read position: chr4:70,704,877
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 728503 as yet unmatched pairs. 14174 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr4:82,358,670
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 727038 as yet unmatched pairs. 12694 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:87,494,307
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 728592 as yet unmatched pairs. 14247 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:102,809,809
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 725112 as yet unmatched pairs. 10767 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr4:119,027,203
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 727897 as yet unmatched pairs. 13542 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:119,031,494
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 733989 as yet unmatched pairs. 19634 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:122,315,511
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 720400 as yet unmatched pairs. 6036 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:140,380,989
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 719228 as yet unmatched pairs. 4864 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:158,170,691
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 718384 as yet unmatched pairs. 4016 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:169,692,211
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 716099 as yet unmatched pairs. 1727 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr4:189,961,905
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 714428 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr5:11,816,857
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 712911 as yet unmatched pairs. 44123 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:14,405,867
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 713627 as yet unmatched pairs. 44835 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:14,653,261
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 709542 as yet unmatched pairs. 40750 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:34,936,237
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 709185 as yet unmatched pairs. 40386 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:40,972,549
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 707386 as yet unmatched pairs. 38586 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:55,941,291
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 706458 as yet unmatched pairs. 37656 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:68,292,351
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 705453 as yet unmatched pairs. 36651 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:72,196,017
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 704322 as yet unmatched pairs. 35513 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:73,502,594
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 702654 as yet unmatched pairs. 33845 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr5:80,058,732
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 700644 as yet unmatched pairs. 31826 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:83,540,009
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 699906 as yet unmatched pairs. 31088 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:93,683,363
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 698164 as yet unmatched pairs. 29345 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:102,950,751
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 697078 as yet unmatched pairs. 28255 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:119,452,543
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 695219 as yet unmatched pairs. 26395 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:131,159,471
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 695205 as yet unmatched pairs. 26381 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:134,609,664
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 691986 as yet unmatched pairs. 23153 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:138,444,462
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 690742 as yet unmatched pairs. 21895 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:140,529,605
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 689240 as yet unmatched pairs. 20381 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:141,174,441
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 688660 as yet unmatched pairs. 19801 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:141,476,797
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 687704 as yet unmatched pairs. 18844 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:148,404,724
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 684945 as yet unmatched pairs. 16085 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr5:150,374,995
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 683730 as yet unmatched pairs. 14870 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:151,032,301
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 682395 as yet unmatched pairs. 13528 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:154,792,636
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 680762 as yet unmatched pairs. 11890 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:168,817,451
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 679069 as yet unmatched pairs. 10192 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 3s. Last read position: chr5:172,096,464
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 677672 as yet unmatched pairs. 8795 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:177,292,083
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 676391 as yet unmatched pairs. 7513 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:178,142,966
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 674708 as yet unmatched pairs. 5829 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:179,765,671
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 673164 as yet unmatched pairs. 4282 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr5:179,825,173
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 681992 as yet unmatched pairs. 13110 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:180,328,327
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 669936 as yet unmatched pairs. 1052 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:7,240,544
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 668435 as yet unmatched pairs. 37261 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:24,666,536
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 666975 as yet unmatched pairs. 35798 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:30,186,068
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 665308 as yet unmatched pairs. 34130 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:31,539,145
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 664262 as yet unmatched pairs. 33084 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,894
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 662698 as yet unmatched pairs. 31510 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:32,001,374
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 662779 as yet unmatched pairs. 31591 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:32,974,753
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 660114 as yet unmatched pairs. 28925 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:34,762,609
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 658847 as yet unmatched pairs. 27658 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:41,941,550
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 657155 as yet unmatched pairs. 25947 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:44,230,448
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 655346 as yet unmatched pairs. 24137 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:56,603,619
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 654485 as yet unmatched pairs. 23265 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:73,820,527
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 653079 as yet unmatched pairs. 21858 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:82,365,430
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 651883 as yet unmatched pairs. 20662 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:89,710,716
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 649890 as yet unmatched pairs. 18663 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:109,441,358
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 648448 as yet unmatched pairs. 17217 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:116,433,478
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 646935 as yet unmatched pairs. 15704 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:127,148,736
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 648790 as yet unmatched pairs. 17536 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 3s. Last read position: chr6:132,297,168
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 646312 as yet unmatched pairs. 15052 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:143,497,402
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 643115 as yet unmatched pairs. 11853 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:149,742,438
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 641606 as yet unmatched pairs. 10344 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:151,353,055
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 641735 as yet unmatched pairs. 10473 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:152,316,961
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 639533 as yet unmatched pairs. 8270 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:158,095,848
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 637586 as yet unmatched pairs. 6313 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:159,267,891
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 637322 as yet unmatched pairs. 6040 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:160,407,168
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 637030 as yet unmatched pairs. 5739 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr6:169,228,168
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 633333 as yet unmatched pairs. 2041 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr7:584,530
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 631508 as yet unmatched pairs. 51673 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:4,114,252
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 629269 as yet unmatched pairs. 49433 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:5,389,064
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 628564 as yet unmatched pairs. 48727 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,492
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 639778 as yet unmatched pairs. 59939 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:6,041,123
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 624435 as yet unmatched pairs. 44590 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr7:22,813,089
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 623442 as yet unmatched pairs. 43597 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:28,957,156
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 621231 as yet unmatched pairs. 41386 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:42,223,169
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 619759 as yet unmatched pairs. 39905 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:44,112,735
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 621520 as yet unmatched pairs. 41662 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:47,302,946
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 617581 as yet unmatched pairs. 37722 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:64,991,220
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 615106 as yet unmatched pairs. 35225 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:73,470,370
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 614413 as yet unmatched pairs. 34532 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:75,042,929
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 613187 as yet unmatched pairs. 33304 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,811
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 623577 as yet unmatched pairs. 43694 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr7:76,329,556
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 610176 as yet unmatched pairs. 30292 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:92,002,296
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 608362 as yet unmatched pairs. 28476 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:94,406,276
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 616608 as yet unmatched pairs. 36721 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:94,417,723
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 609247 as yet unmatched pairs. 29360 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:94,428,349
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 606451 as yet unmatched pairs. 26551 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:99,493,672
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 602033 as yet unmatched pairs. 22122 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:100,678,589
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 601538 as yet unmatched pairs. 21622 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:102,178,508
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 599771 as yet unmatched pairs. 19851 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:102,583,041
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 600123 as yet unmatched pairs. 20195 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:107,372,640
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 596743 as yet unmatched pairs. 16810 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 2s. Last read position: chr7:121,351,250
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 595236 as yet unmatched pairs. 15291 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr7:128,830,674
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 596354 as yet unmatched pairs. 16407 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:128,847,708
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 596837 as yet unmatched pairs. 16890 records in RAM.
INFO 2026-06-08 08:56:10 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:129,677,687
INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 590844 as yet unmatched pairs. 10897 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:134,933,789
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 590655 as yet unmatched pairs. 10691 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr7:137,253,464
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 590482 as yet unmatched pairs. 10518 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:140,696,791
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 588863 as yet unmatched pairs. 8898 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:143,813,713
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 585393 as yet unmatched pairs. 5428 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:151,059,674
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 584051 as yet unmatched pairs. 4086 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 58s. Last read position: chr7:154,446,212
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 581849 as yet unmatched pairs. 1879 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr8:1,771,372
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 580226 as yet unmatched pairs. 34693 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:11,850,884
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 580799 as yet unmatched pairs. 35261 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr8:22,128,915
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 576942 as yet unmatched pairs. 31402 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:23,566,187
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 575424 as yet unmatched pairs. 29881 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:30,070,043
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 573993 as yet unmatched pairs. 28450 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:38,107,150
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 572812 as yet unmatched pairs. 27269 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:38,787,382
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 572636 as yet unmatched pairs. 27093 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:39,082,674
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 570121 as yet unmatched pairs. 24577 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:47,831,819
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 568030 as yet unmatched pairs. 22483 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:58,581,731
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 567145 as yet unmatched pairs. 21594 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:69,627,272
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 567134 as yet unmatched pairs. 21560 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:80,558,825
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 564365 as yet unmatched pairs. 18791 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:96,602,416
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 562892 as yet unmatched pairs. 17313 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,331
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 565155 as yet unmatched pairs. 19567 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:103,140,973
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 561375 as yet unmatched pairs. 15782 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:119,791,326
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 557830 as yet unmatched pairs. 12237 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 2s. Last read position: chr8:123,810,327
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 556316 as yet unmatched pairs. 10721 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:140,551,338
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 555189 as yet unmatched pairs. 9593 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,792,236
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 554351 as yet unmatched pairs. 8754 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,882
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 551818 as yet unmatched pairs. 6221 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr8:144,080,384
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 549949 as yet unmatched pairs. 4352 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:144,424,125
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 547983 as yet unmatched pairs. 2379 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:5,469,962
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 545109 as yet unmatched pairs. 40229 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:20,981,512
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 543942 as yet unmatched pairs. 39056 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:35,381,205
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 542262 as yet unmatched pairs. 37367 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:35,706,478
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 542304 as yet unmatched pairs. 37398 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:37,442,288
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 539192 as yet unmatched pairs. 34284 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:69,249,418
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 538094 as yet unmatched pairs. 33182 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:76,708,046
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 540518 as yet unmatched pairs. 35606 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:83,679,994
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 535799 as yet unmatched pairs. 30881 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:87,525,399
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 532835 as yet unmatched pairs. 27917 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 2s. Last read position: chr9:93,451,164
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 531415 as yet unmatched pairs. 26497 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr9:98,080,961
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 530268 as yet unmatched pairs. 25333 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:99,047,941
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 532871 as yet unmatched pairs. 27930 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:108,869,165
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 527239 as yet unmatched pairs. 22296 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:113,221,192
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 525516 as yet unmatched pairs. 20569 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:115,059,855
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 525876 as yet unmatched pairs. 20928 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:117,214,616
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 522771 as yet unmatched pairs. 17823 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:122,854,548
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 521256 as yet unmatched pairs. 16307 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:127,108,018
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 519652 as yet unmatched pairs. 14703 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:128,248,684
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 518033 as yet unmatched pairs. 13074 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:128,692,868
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 518290 as yet unmatched pairs. 13331 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:130,391,464
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 515000 as yet unmatched pairs. 10034 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:131,580,362
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 513815 as yet unmatched pairs. 8842 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:134,045,333
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 512548 as yet unmatched pairs. 7575 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr9:134,825,870
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 511223 as yet unmatched pairs. 6249 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr9:136,717,456
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 508680 as yet unmatched pairs. 3705 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:137,189,172
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 508086 as yet unmatched pairs. 3111 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:872,642
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 504701 as yet unmatched pairs. 30681 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:11,956,493
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 503401 as yet unmatched pairs. 29378 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:17,235,181
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 503889 as yet unmatched pairs. 29864 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:29,458,187
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 500544 as yet unmatched pairs. 26518 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:32,023,027
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 501904 as yet unmatched pairs. 27877 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:34,360,117
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 498128 as yet unmatched pairs. 24101 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:46,337,356
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 496573 as yet unmatched pairs. 22545 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:62,057,179
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 495704 as yet unmatched pairs. 21674 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:70,672,769
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 494201 as yet unmatched pairs. 20171 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:73,797,244
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 492513 as yet unmatched pairs. 18481 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:76,887,322
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 492779 as yet unmatched pairs. 18747 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:79,277,271
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 489672 as yet unmatched pairs. 15639 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:87,230,965
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 487853 as yet unmatched pairs. 13819 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:88,947,263
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 492410 as yet unmatched pairs. 18376 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:93,431,502
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 485954 as yet unmatched pairs. 11912 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:97,432,424
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 484313 as yet unmatched pairs. 10268 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:101,006,959
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 482210 as yet unmatched pairs. 8165 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:102,676,737
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 480571 as yet unmatched pairs. 6526 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:110,901,497
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 479430 as yet unmatched pairs. 5382 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr10:119,651,737
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 478326 as yet unmatched pairs. 4270 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:124,682,212
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 476449 as yet unmatched pairs. 2384 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr10:133,394,227
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 474632 as yet unmatched pairs. 567 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr11:498,812
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 473538 as yet unmatched pairs. 62676 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:893,429
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 472346 as yet unmatched pairs. 61484 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:2,969,825
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 469694 as yet unmatched pairs. 58831 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:6,544,593
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 467731 as yet unmatched pairs. 56868 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:6,630,155
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 467925 as yet unmatched pairs. 57061 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:8,730,481
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 466126 as yet unmatched pairs. 55262 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:10,797,749
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 464848 as yet unmatched pairs. 53984 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:13,365,517
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 461307 as yet unmatched pairs. 50438 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:20,083,105
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 460416 as yet unmatched pairs. 49547 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:34,122,537
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 458464 as yet unmatched pairs. 47594 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:46,678,746
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 456981 as yet unmatched pairs. 46108 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:47,642,413
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 455494 as yet unmatched pairs. 44618 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:57,809,304
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 454658 as yet unmatched pairs. 43780 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:61,364,386
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 453074 as yet unmatched pairs. 42195 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,279
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 452015 as yet unmatched pairs. 41136 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,161
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 451237 as yet unmatched pairs. 40358 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:62,535,948
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 449805 as yet unmatched pairs. 38926 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:62,775,879
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 447304 as yet unmatched pairs. 36423 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:64,234,850
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 447223 as yet unmatched pairs. 36332 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr11:64,878,178
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 444030 as yet unmatched pairs. 33139 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:65,536,716
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 442468 as yet unmatched pairs. 31566 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:65,645,796
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 439823 as yet unmatched pairs. 28918 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:65,978,613
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 438343 as yet unmatched pairs. 27438 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:66,643,826
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 436787 as yet unmatched pairs. 25882 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:67,586,454
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 435383 as yet unmatched pairs. 24478 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr11:69,641,446
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 439760 as yet unmatched pairs. 28855 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr11:72,007,332
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 432016 as yet unmatched pairs. 21111 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:72,985,094
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 429971 as yet unmatched pairs. 19065 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:75,267,675
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 428025 as yet unmatched pairs. 17119 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:78,221,732
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 426874 as yet unmatched pairs. 15968 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:94,464,169
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 425047 as yet unmatched pairs. 14139 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:102,114,326
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 428374 as yet unmatched pairs. 17466 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:108,335,844
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 422080 as yet unmatched pairs. 11172 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:113,255,912
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 421448 as yet unmatched pairs. 10537 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr11:116,847,526
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 419330 as yet unmatched pairs. 8418 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr11:117,290,536
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 418295 as yet unmatched pairs. 7383 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr11:118,643,800
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 416645 as yet unmatched pairs. 5732 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr11:119,309,698
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 415092 as yet unmatched pairs. 4179 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,755
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 415555 as yet unmatched pairs. 4640 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:130,129,071
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 413168 as yet unmatched pairs. 2252 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr12:1,028,221
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 410715 as yet unmatched pairs. 50964 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:6,286,647
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 408600 as yet unmatched pairs. 48839 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 2s. Last read position: chr12:6,766,615
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 409269 as yet unmatched pairs. 49508 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:6,940,951
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 405932 as yet unmatched pairs. 46171 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:8,039,980
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 404277 as yet unmatched pairs. 44516 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:9,074,759
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 415522 as yet unmatched pairs. 55756 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:9,091,396
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 406997 as yet unmatched pairs. 47231 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:9,112,180
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 416378 as yet unmatched pairs. 56612 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:11,885,957
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 399358 as yet unmatched pairs. 39591 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:19,322,310
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 397655 as yet unmatched pairs. 37888 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:27,654,722
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 396551 as yet unmatched pairs. 36784 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:45,922,489
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 394805 as yet unmatched pairs. 35032 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:49,052,630
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 393928 as yet unmatched pairs. 34154 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:49,838,967
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 392308 as yet unmatched pairs. 32529 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:53,295,912
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 394032 as yet unmatched pairs. 34253 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:54,347,814
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 390192 as yet unmatched pairs. 30408 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:55,992,156
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 388213 as yet unmatched pairs. 28429 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:56,178,496
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 387161 as yet unmatched pairs. 27376 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:56,714,636
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 387890 as yet unmatched pairs. 28105 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr12:57,161,084
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 385871 as yet unmatched pairs. 26086 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:57,206,697
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 382940 as yet unmatched pairs. 23155 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:57,718,372
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 381371 as yet unmatched pairs. 21586 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:66,152,315
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 381383 as yet unmatched pairs. 21598 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,607
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 378034 as yet unmatched pairs. 18248 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:88,102,938
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 376670 as yet unmatched pairs. 16883 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:96,943,591
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 375624 as yet unmatched pairs. 15836 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:103,947,324
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 375309 as yet unmatched pairs. 15521 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:108,339,104
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 373683 as yet unmatched pairs. 13895 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:110,342,438
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 372759 as yet unmatched pairs. 12971 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr12:112,309,604
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 370151 as yet unmatched pairs. 10358 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:115,991,530
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 368634 as yet unmatched pairs. 8841 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:120,200,738
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 366689 as yet unmatched pairs. 6887 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:122,135,642
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 365675 as yet unmatched pairs. 5873 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:123,926,708
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 363533 as yet unmatched pairs. 3731 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:124,977,475
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 362467 as yet unmatched pairs. 2664 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:132,773,122
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 362456 as yet unmatched pairs. 2652 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr13:23,337,376
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 359144 as yet unmatched pairs. 14529 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr13:32,535,902
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 358118 as yet unmatched pairs. 13503 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr13:40,666,074
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 362973 as yet unmatched pairs. 18352 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr13:48,253,816
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 355473 as yet unmatched pairs. 10852 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr13:77,058,324
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 352990 as yet unmatched pairs. 8369 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr13:102,618,775
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 351869 as yet unmatched pairs. 7244 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr13:110,187,240
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 351639 as yet unmatched pairs. 7014 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 3s. Last read position: chr13:110,438,642
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 349014 as yet unmatched pairs. 4389 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr13:110,503,980
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 348607 as yet unmatched pairs. 3981 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr13:114,282,043
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 345032 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:22,841,921
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 343932 as yet unmatched pairs. 20121 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:24,118,399
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 341939 as yet unmatched pairs. 18125 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:30,653,554
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 340343 as yet unmatched pairs. 16529 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,718
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 339316 as yet unmatched pairs. 15492 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr14:55,142,668
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 337653 as yet unmatched pairs. 13828 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:66,965,211
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 336040 as yet unmatched pairs. 12214 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr14:69,768,170
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 334908 as yet unmatched pairs. 11082 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:74,535,947
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 334077 as yet unmatched pairs. 10244 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:89,162,623
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 332225 as yet unmatched pairs. 8390 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:93,954,416
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 330448 as yet unmatched pairs. 6613 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:102,011,991
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 329116 as yet unmatched pairs. 5281 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr14:103,675,689
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 327443 as yet unmatched pairs. 3601 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr14:104,946,358
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 326488 as yet unmatched pairs. 2646 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr15:20,900,733
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 323703 as yet unmatched pairs. 31031 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:28,256,189
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 322719 as yet unmatched pairs. 30046 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:32,731,140
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 330205 as yet unmatched pairs. 37532 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:32,733,109
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 326085 as yet unmatched pairs. 33412 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:38,299,446
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 318627 as yet unmatched pairs. 25951 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:39,594,399
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 324179 as yet unmatched pairs. 31502 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:42,166,159
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 315697 as yet unmatched pairs. 23019 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:43,526,543
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 314488 as yet unmatched pairs. 21810 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:45,403,156
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 312709 as yet unmatched pairs. 20030 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:51,058,193
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 314377 as yet unmatched pairs. 21698 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:59,076,108
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 309729 as yet unmatched pairs. 17049 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr15:63,044,027
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 315871 as yet unmatched pairs. 23190 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:63,713,612
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 306964 as yet unmatched pairs. 14283 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr15:66,501,908
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 306649 as yet unmatched pairs. 13968 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:71,878,111
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 303940 as yet unmatched pairs. 11259 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,995
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 303642 as yet unmatched pairs. 10960 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr15:75,688,396
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 300804 as yet unmatched pairs. 8121 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:80,942,189
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 298981 as yet unmatched pairs. 6298 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr15:85,669,758
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 298382 as yet unmatched pairs. 5698 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr15:88,856,428
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 296944 as yet unmatched pairs. 4260 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr15:89,333,264
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 296413 as yet unmatched pairs. 3729 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr15:96,326,316
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 294589 as yet unmatched pairs. 1905 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr15:101,772,871
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 292716 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr16:670,897
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 290954 as yet unmatched pairs. 45684 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:1,451,639
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 289157 as yet unmatched pairs. 43887 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:2,089,947
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 288911 as yet unmatched pairs. 43641 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:2,117,626
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 286030 as yet unmatched pairs. 40760 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,991
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 284201 as yet unmatched pairs. 38929 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:3,674,422
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 281865 as yet unmatched pairs. 36591 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:5,071,939
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 279898 as yet unmatched pairs. 34624 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:14,648,491
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 278312 as yet unmatched pairs. 33038 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:15,061,749
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 277526 as yet unmatched pairs. 32252 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:15,717,258
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 279279 as yet unmatched pairs. 34005 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:15,724,775
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 276867 as yet unmatched pairs. 31593 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:15,750,189
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 282842 as yet unmatched pairs. 37568 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:15,838,106
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 281976 as yet unmatched pairs. 36702 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:16,350,191
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 271702 as yet unmatched pairs. 26428 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:18,358,210
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 271471 as yet unmatched pairs. 26197 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:18,879,631
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 269660 as yet unmatched pairs. 24386 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,930
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 268398 as yet unmatched pairs. 23123 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:23,068,169
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 268449 as yet unmatched pairs. 23174 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:28,379,821
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 267625 as yet unmatched pairs. 22350 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:28,979,276
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 265824 as yet unmatched pairs. 20548 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:29,836,772
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 264562 as yet unmatched pairs. 19286 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:30,123,040
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 262010 as yet unmatched pairs. 16733 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:30,711,889
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 260747 as yet unmatched pairs. 15469 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:31,182,599
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 262759 as yet unmatched pairs. 17480 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:49,636,749
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 257480 as yet unmatched pairs. 12201 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr16:55,485,699
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 258478 as yet unmatched pairs. 13196 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:57,795,097
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 254587 as yet unmatched pairs. 9305 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:67,666,388
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 252882 as yet unmatched pairs. 7598 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:70,268,357
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 251670 as yet unmatched pairs. 6386 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr16:74,606,968
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 249653 as yet unmatched pairs. 4369 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:85,656,375
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 248367 as yet unmatched pairs. 3083 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:89,282,439
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 246528 as yet unmatched pairs. 1244 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr17:1,125,294
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 245384 as yet unmatched pairs. 82194 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:1,679,028
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 243527 as yet unmatched pairs. 80337 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:2,690,583
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 241898 as yet unmatched pairs. 78708 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:4,937,771
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 240399 as yet unmatched pairs. 77209 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:7,012,708
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 240674 as yet unmatched pairs. 77483 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:7,417,462
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 238504 as yet unmatched pairs. 75308 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:7,593,109
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 235474 as yet unmatched pairs. 72278 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:8,238,222
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 233746 as yet unmatched pairs. 70550 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:10,019,842
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 232578 as yet unmatched pairs. 69375 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:16,381,950
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 234623 as yet unmatched pairs. 71420 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:17,180,609
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 231828 as yet unmatched pairs. 68625 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:18,671,017
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 227493 as yet unmatched pairs. 64290 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:27,306,809
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 227024 as yet unmatched pairs. 63821 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr17:28,749,023
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 224926 as yet unmatched pairs. 61723 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr17:31,200,445
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 223599 as yet unmatched pairs. 60396 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr17:35,717,339
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 222172 as yet unmatched pairs. 58969 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:38,458,147
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 221039 as yet unmatched pairs. 57836 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:39,225,416
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 219173 as yet unmatched pairs. 55970 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:40,256,485
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 217910 as yet unmatched pairs. 54707 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 133s. Last read position: chr17:42,021,656
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 216524 as yet unmatched pairs. 53321 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr17:42,544,013
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 214681 as yet unmatched pairs. 51478 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:43,018,756
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 214575 as yet unmatched pairs. 51353 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:44,353,874
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 211164 as yet unmatched pairs. 47942 records in RAM.
INFO 2026-06-08 09:06:31 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:47,292,253
INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 209833 as yet unmatched pairs. 46610 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:49,317,468
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 208821 as yet unmatched pairs. 45597 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,358
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 219655 as yet unmatched pairs. 56428 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,522
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 260215 as yet unmatched pairs. 96988 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,561
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 247553 as yet unmatched pairs. 84326 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,248
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 233257 as yet unmatched pairs. 70030 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,872
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 265379 as yet unmatched pairs. 102152 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,569
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 220323 as yet unmatched pairs. 57096 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,859
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 252759 as yet unmatched pairs. 89531 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,993
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 245435 as yet unmatched pairs. 82206 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,178
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 252698 as yet unmatched pairs. 89469 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,794
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 248956 as yet unmatched pairs. 85727 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,594
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 258256 as yet unmatched pairs. 95027 records in RAM.
INFO 2026-06-08 09:06:55 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,187
INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 269994 as yet unmatched pairs. 106765 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,026
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 270280 as yet unmatched pairs. 107051 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,436
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 210767 as yet unmatched pairs. 47538 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,852
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 198124 as yet unmatched pairs. 34895 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:57,616,034
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 182350 as yet unmatched pairs. 19121 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr17:59,668,813
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 182639 as yet unmatched pairs. 19410 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:61,405,474
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 181380 as yet unmatched pairs. 18151 records in RAM.
INFO 2026-06-08 09:07:06 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:63,837,517
INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 178286 as yet unmatched pairs. 15057 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr17:68,206,063
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 176065 as yet unmatched pairs. 12835 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:75,002,078
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 175029 as yet unmatched pairs. 11798 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:75,904,622
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 173200 as yet unmatched pairs. 9969 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:77,482,243
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 172554 as yet unmatched pairs. 9323 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr17:80,104,842
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 169871 as yet unmatched pairs. 6640 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:81,443,481
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 168385 as yet unmatched pairs. 5154 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:81,844,074
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 167842 as yet unmatched pairs. 4609 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 2s. Last read position: chr17:82,088,490
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 165029 as yet unmatched pairs. 1796 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr18:2,891,802
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 162916 as yet unmatched pairs. 12807 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr18:9,119,555
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 161346 as yet unmatched pairs. 11236 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr18:21,664,037
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 159629 as yet unmatched pairs. 9518 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr18:26,057,660
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 159521 as yet unmatched pairs. 9410 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr18:36,138,296
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 157062 as yet unmatched pairs. 6951 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr18:48,950,378
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 155335 as yet unmatched pairs. 5223 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr18:57,615,935
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 154272 as yet unmatched pairs. 4160 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr18:63,318,358
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 154871 as yet unmatched pairs. 4759 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr18:79,973,705
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 151057 as yet unmatched pairs. 945 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr19:877,019
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 148862 as yet unmatched pairs. 64138 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:1,269,353
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 147722 as yet unmatched pairs. 62998 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:1,823,442
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 145081 as yet unmatched pairs. 60357 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:2,424,079
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 143263 as yet unmatched pairs. 58539 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:3,547,998
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 142257 as yet unmatched pairs. 57533 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:4,409,613
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 139324 as yet unmatched pairs. 54599 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 2s. Last read position: chr19:5,587,206
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 137890 as yet unmatched pairs. 53165 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:6,682,020
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 136303 as yet unmatched pairs. 51578 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:7,847,870
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 134246 as yet unmatched pairs. 49521 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 2s. Last read position: chr19:10,092,676
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 132708 as yet unmatched pairs. 47983 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:10,775,843
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 131420 as yet unmatched pairs. 46695 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:11,193,338
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 135841 as yet unmatched pairs. 51116 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:11,547,885
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 128804 as yet unmatched pairs. 44079 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:12,924,519
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 126274 as yet unmatched pairs. 41549 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:13,799,746
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 124273 as yet unmatched pairs. 39548 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:14,433,445
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 125141 as yet unmatched pairs. 40416 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:15,110,212
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 121985 as yet unmatched pairs. 37260 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:15,256,224
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 120781 as yet unmatched pairs. 36056 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:16,089,045
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 124983 as yet unmatched pairs. 40257 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:17,207,124
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 116288 as yet unmatched pairs. 31562 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:18,161,970
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 114110 as yet unmatched pairs. 29383 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 2s. Last read position: chr19:18,588,880
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 112890 as yet unmatched pairs. 28163 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:19,659,897
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 110221 as yet unmatched pairs. 25494 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:35,166,278
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 108863 as yet unmatched pairs. 24136 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:38,130,659
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 106549 as yet unmatched pairs. 21822 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,573
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 105018 as yet unmatched pairs. 20291 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 2s. Last read position: chr19:40,605,045
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 103447 as yet unmatched pairs. 18720 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:42,271,963
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 102527 as yet unmatched pairs. 17800 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:43,592,254
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 100165 as yet unmatched pairs. 15438 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr19:45,770,572
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 99623 as yet unmatched pairs. 14896 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:46,727,457
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 96381 as yet unmatched pairs. 11654 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:48,470,625
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 94571 as yet unmatched pairs. 9844 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:49,491,082
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 93949 as yet unmatched pairs. 9222 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:49,884,668
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 91384 as yet unmatched pairs. 6657 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:54,201,486
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 90918 as yet unmatched pairs. 6191 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr19:55,494,774
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 88295 as yet unmatched pairs. 3568 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:57,686,944
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 85851 as yet unmatched pairs. 1123 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr20:1,375,406
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 86666 as yet unmatched pairs. 23037 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr20:4,699,244
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 82825 as yet unmatched pairs. 19196 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr20:21,232,783
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 81364 as yet unmatched pairs. 17735 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr20:32,706,702
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 80537 as yet unmatched pairs. 16908 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr20:35,493,522
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 78214 as yet unmatched pairs. 14585 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr20:36,544,924
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 83355 as yet unmatched pairs. 19726 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr20:37,732,913
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 75166 as yet unmatched pairs. 11537 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr20:43,460,947
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 74525 as yet unmatched pairs. 10895 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr20:45,848,459
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 71965 as yet unmatched pairs. 8335 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr20:49,234,994
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 70507 as yet unmatched pairs. 6877 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr20:53,576,751
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 68601 as yet unmatched pairs. 4969 records in RAM.
INFO 2026-06-08 09:08:56 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr20:62,133,304
INFO 2026-06-08 09:08:56 MarkDuplicates Tracking 67308 as yet unmatched pairs. 3676 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr20:63,520,864
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 67599 as yet unmatched pairs. 3967 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr21:8,210,321
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 63491 as yet unmatched pairs. 10927 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,958
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 63022 as yet unmatched pairs. 10453 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr21:26,089,940
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 62177 as yet unmatched pairs. 9608 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr21:34,792,182
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 59875 as yet unmatched pairs. 7306 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr21:44,316,289
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 58560 as yet unmatched pairs. 5991 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr21:45,989,093
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 56785 as yet unmatched pairs. 4216 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr21:46,112,505
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 56250 as yet unmatched pairs. 3681 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr21:46,132,417
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 56009 as yet unmatched pairs. 3440 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:20,126,359
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 51846 as yet unmatched pairs. 14958 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr22:23,983,529
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 50393 as yet unmatched pairs. 13505 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr22:29,681,439
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 48590 as yet unmatched pairs. 11702 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr22:35,419,912
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 47058 as yet unmatched pairs. 10170 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr22:36,296,947
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 47096 as yet unmatched pairs. 10208 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr22:37,677,030
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 47695 as yet unmatched pairs. 10807 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr22:39,235,832
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 42338 as yet unmatched pairs. 5450 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr22:41,661,331
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 41110 as yet unmatched pairs. 4222 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr22:49,918,772
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 39148 as yet unmatched pairs. 2260 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr22:50,526,688
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 37751 as yet unmatched pairs. 863 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:3,299,911
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 35631 as yet unmatched pairs. 32820 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chrX:12,976,345
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 39646 as yet unmatched pairs. 36833 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chrX:24,841,724
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 32943 as yet unmatched pairs. 30129 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:44,873,973
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 31610 as yet unmatched pairs. 28795 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chrX:48,600,395
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 31547 as yet unmatched pairs. 28732 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:51,896,661
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 29547 as yet unmatched pairs. 26732 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chrX:53,602,568
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 27804 as yet unmatched pairs. 24989 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chrX:66,022,210
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 25585 as yet unmatched pairs. 22770 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:71,604,012
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 23987 as yet unmatched pairs. 21172 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:77,969,224
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 23100 as yet unmatched pairs. 20285 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chrX:103,331,598
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 21807 as yet unmatched pairs. 18992 records in RAM.
INFO 2026-06-08 09:09:48 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chrX:108,655,410
INFO 2026-06-08 09:09:48 MarkDuplicates Tracking 21319 as yet unmatched pairs. 18504 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chrX:117,898,841
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 19426 as yet unmatched pairs. 16611 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:130,131,786
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 17401 as yet unmatched pairs. 14586 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chrX:152,945,355
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 16170 as yet unmatched pairs. 13355 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:154,012,637
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 16158 as yet unmatched pairs. 13343 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:154,351,651
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 24986 as yet unmatched pairs. 22171 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 2s. Last read position: chrX:154,354,009
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 17119 as yet unmatched pairs. 14304 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chrX:154,359,571
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 20935 as yet unmatched pairs. 18120 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chrX:154,361,370
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 24915 as yet unmatched pairs. 22100 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:154,364,831
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 12903 as yet unmatched pairs. 10088 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chrX:154,367,520
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 19436 as yet unmatched pairs. 16621 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chrX:154,440,273
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 4276 as yet unmatched pairs. 1461 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,459
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 4176 as yet unmatched pairs. 2143 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,011
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 1336 as yet unmatched pairs. 1335 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 624908895 records. 0 pairs never matched.
INFO 2026-06-08 09:11:00 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140344; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:11:00 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:11:05 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:11:05 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:12:21 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 09:12:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,630
INFO 2026-06-08 09:12:29 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,221
INFO 2026-06-08 09:12:29 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-08 09:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,257
INFO 2026-06-08 09:12:30 OpticalDuplicateFinder Large duplicate set. size = 1401
INFO 2026-06-08 09:12:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,681
INFO 2026-06-08 09:12:30 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 09:12:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,084
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,250
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,015
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder Large duplicate set. size = 1702
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,806
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,729
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,785
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder Large duplicate set. size = 1609
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,663
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,916
INFO 2026-06-08 09:12:48 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:12:49 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:13:50 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:14:01 MarkDuplicates After generateDuplicateIndexes freeMemory: 203969896; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:14:01 MarkDuplicates Marking 464447745 records as duplicates.
INFO 2026-06-08 09:14:01 MarkDuplicates Found 17658189 optical duplicate clusters.
INFO 2026-06-08 09:14:01 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:14:18 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:35,192,707
INFO 2026-06-08 09:14:35 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:119,953,625
INFO 2026-06-08 09:14:51 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:153,976,740
INFO 2026-06-08 09:15:08 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:07s. Time for last 10,000,000: 16s. Last read position: chr1:161,206,585
INFO 2026-06-08 09:15:24 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:23s. Time for last 10,000,000: 16s. Last read position: chr1:203,179,564
INFO 2026-06-08 09:15:41 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:40s. Time for last 10,000,000: 16s. Last read position: chr1:243,545,585
INFO 2026-06-08 09:15:57 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:56s. Time for last 10,000,000: 16s. Last read position: chr2:36,476,978
INFO 2026-06-08 09:16:14 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:13s. Time for last 10,000,000: 16s. Last read position: chr2:101,874,226
INFO 2026-06-08 09:16:30 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:29s. Time for last 10,000,000: 16s. Last read position: chr2:206,161,395
INFO 2026-06-08 09:16:47 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:46s. Time for last 10,000,000: 16s. Last read position: chr2:219,218,205
INFO 2026-06-08 09:17:04 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:03s. Time for last 10,000,000: 16s. Last read position: chr3:8,548,798
INFO 2026-06-08 09:17:21 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:20s. Time for last 10,000,000: 16s. Last read position: chr3:49,122,318
INFO 2026-06-08 09:17:37 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:36s. Time for last 10,000,000: 16s. Last read position: chr3:123,657,235
INFO 2026-06-08 09:17:54 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 16s. Last read position: chr4:7,800,460
INFO 2026-06-08 09:18:10 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:09s. Time for last 10,000,000: 16s. Last read position: chr4:119,031,494
INFO 2026-06-08 09:18:27 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:25s. Time for last 10,000,000: 16s. Last read position: chr5:40,972,549
INFO 2026-06-08 09:18:43 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:42s. Time for last 10,000,000: 16s. Last read position: chr5:131,159,471
INFO 2026-06-08 09:19:00 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 16s. Last read position: chr5:168,817,451
INFO 2026-06-08 09:19:16 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:15s. Time for last 10,000,000: 16s. Last read position: chr6:31,539,145
INFO 2026-06-08 09:19:33 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:31s. Time for last 10,000,000: 16s. Last read position: chr6:89,710,716
INFO 2026-06-08 09:19:49 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:48s. Time for last 10,000,000: 16s. Last read position: chr6:159,267,891
INFO 2026-06-08 09:20:05 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:04s. Time for last 10,000,000: 16s. Last read position: chr7:42,223,169
INFO 2026-06-08 09:20:22 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:21s. Time for last 10,000,000: 16s. Last read position: chr7:94,417,723
INFO 2026-06-08 09:20:38 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:37s. Time for last 10,000,000: 16s. Last read position: chr7:129,677,687
INFO 2026-06-08 09:20:55 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:53s. Time for last 10,000,000: 16s. Last read position: chr8:23,566,187
INFO 2026-06-08 09:21:11 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:10s. Time for last 10,000,000: 16s. Last read position: chr8:100,703,331
INFO 2026-06-08 09:21:27 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:26s. Time for last 10,000,000: 16s. Last read position: chr9:20,981,512
INFO 2026-06-08 09:21:44 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:43s. Time for last 10,000,000: 16s. Last read position: chr9:99,047,941
INFO 2026-06-08 09:22:00 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:59s. Time for last 10,000,000: 16s. Last read position: chr9:131,580,362
INFO 2026-06-08 09:22:17 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:16s. Time for last 10,000,000: 16s. Last read position: chr10:34,360,117
INFO 2026-06-08 09:22:33 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:32s. Time for last 10,000,000: 16s. Last read position: chr10:97,432,424
INFO 2026-06-08 09:22:49 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:48s. Time for last 10,000,000: 16s. Last read position: chr11:6,544,593
INFO 2026-06-08 09:23:06 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:04s. Time for last 10,000,000: 16s. Last read position: chr11:61,364,386
INFO 2026-06-08 09:23:22 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:21s. Time for last 10,000,000: 16s. Last read position: chr11:66,643,826
INFO 2026-06-08 09:23:38 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:37s. Time for last 10,000,000: 16s. Last read position: chr11:113,255,912
INFO 2026-06-08 09:23:55 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:54s. Time for last 10,000,000: 16s. Last read position: chr12:6,940,951
INFO 2026-06-08 09:24:11 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:10s. Time for last 10,000,000: 16s. Last read position: chr12:49,838,967
INFO 2026-06-08 09:24:28 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:27s. Time for last 10,000,000: 16s. Last read position: chr12:76,030,607
INFO 2026-06-08 09:24:44 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:43s. Time for last 10,000,000: 16s. Last read position: chr12:123,926,708
INFO 2026-06-08 09:25:01 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:00s. Time for last 10,000,000: 16s. Last read position: chr13:110,438,642
INFO 2026-06-08 09:25:17 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:16s. Time for last 10,000,000: 16s. Last read position: chr14:74,535,947
INFO 2026-06-08 09:25:34 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:33s. Time for last 10,000,000: 16s. Last read position: chr15:38,299,446
INFO 2026-06-08 09:25:51 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:49s. Time for last 10,000,000: 16s. Last read position: chr15:71,878,111
INFO 2026-06-08 09:26:07 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 16s. Last read position: chr16:1,451,639
INFO 2026-06-08 09:26:23 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:22s. Time for last 10,000,000: 16s. Last read position: chr16:15,750,189
INFO 2026-06-08 09:26:39 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:38s. Time for last 10,000,000: 16s. Last read position: chr16:30,123,040
INFO 2026-06-08 09:26:56 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:55s. Time for last 10,000,000: 16s. Last read position: chr16:89,282,439
INFO 2026-06-08 09:27:14 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:12s. Time for last 10,000,000: 17s. Last read position: chr17:16,381,950
INFO 2026-06-08 09:27:30 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:29s. Time for last 10,000,000: 16s. Last read position: chr17:42,021,656
INFO 2026-06-08 09:27:47 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:45s. Time for last 10,000,000: 16s. Last read position: chr17:50,189,872
INFO 2026-06-08 09:28:04 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 17s. Last read position: chr17:50,199,852
INFO 2026-06-08 09:28:20 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:19s. Time for last 10,000,000: 16s. Last read position: chr17:81,443,481
INFO 2026-06-08 09:28:37 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:36s. Time for last 10,000,000: 16s. Last read position: chr18:63,318,358
INFO 2026-06-08 09:28:53 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:52s. Time for last 10,000,000: 16s. Last read position: chr19:7,847,870
INFO 2026-06-08 09:29:09 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:08s. Time for last 10,000,000: 16s. Last read position: chr19:16,089,045
INFO 2026-06-08 09:29:26 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:24s. Time for last 10,000,000: 16s. Last read position: chr19:43,592,254
INFO 2026-06-08 09:29:42 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 16s. Last read position: chr20:4,699,244
INFO 2026-06-08 09:29:58 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 16s. Last read position: chr20:62,133,304
INFO 2026-06-08 09:30:14 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:13s. Time for last 10,000,000: 15s. Last read position: chr22:20,126,359
INFO 2026-06-08 09:30:30 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:29s. Time for last 10,000,000: 16s. Last read position: chrX:3,299,911
INFO 2026-06-08 09:30:46 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:45s. Time for last 10,000,000: 16s. Last read position: chrX:103,331,598
INFO 2026-06-08 09:31:03 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:01s. Time for last 10,000,000: 16s. Last read position: chrX:154,364,831
INFO 2026-06-08 09:31:17 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:31:17 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:31:17 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:31:17 MarkDuplicates Before output close freeMemory: 203954512; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:31:17 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:31:17 MarkDuplicates After output close freeMemory: 104181432; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:31:17 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.73 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory