Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00434_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00434_B23WHTKLT4_1.md.bam --METRICS_FILE tih_rna_sample_00434_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:30:02.769 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:30:02 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00434_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00434_B23WHTKLT4_1.md.bam --METRICS_FILE tih_rna_sample_00434_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:30:02 GMT 2026] Executing as ?@nf-7ed41c0a01fae5d532c16ec711f976a5-7b8b3-2d8zm on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:30:02 MarkDuplicates Start of doWork freeMemory: 105132192; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:30:02 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:30:02 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:30:08 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,295,737
INFO 2026-06-08 09:30:08 MarkDuplicates Tracking 2021 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 09:30:10 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,756,308
INFO 2026-06-08 09:30:10 MarkDuplicates Tracking 4100 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 09:30:12 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:6,475,948
INFO 2026-06-08 09:30:12 MarkDuplicates Tracking 6304 as yet unmatched pairs. 363 records in RAM.
INFO 2026-06-08 09:30:15 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:9,356,489
INFO 2026-06-08 09:30:15 MarkDuplicates Tracking 7855 as yet unmatched pairs. 292 records in RAM.
INFO 2026-06-08 09:30:17 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:11,796,236
INFO 2026-06-08 09:30:17 MarkDuplicates Tracking 9256 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-08 09:30:19 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:15,727,591
INFO 2026-06-08 09:30:19 MarkDuplicates Tracking 10808 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 09:30:21 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:16,996,045
INFO 2026-06-08 09:30:21 MarkDuplicates Tracking 12385 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 09:30:23 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:19,655,181
INFO 2026-06-08 09:30:23 MarkDuplicates Tracking 15453 as yet unmatched pairs. 1627 records in RAM.
INFO 2026-06-08 09:30:26 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:21,829,400
INFO 2026-06-08 09:30:26 MarkDuplicates Tracking 16652 as yet unmatched pairs. 1394 records in RAM.
INFO 2026-06-08 09:30:28 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:21,876,337
INFO 2026-06-08 09:30:28 MarkDuplicates Tracking 17704 as yet unmatched pairs. 821 records in RAM.
INFO 2026-06-08 09:30:30 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:23,441,386
INFO 2026-06-08 09:30:30 MarkDuplicates Tracking 18736 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 09:30:32 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:26,280,144
INFO 2026-06-08 09:30:32 MarkDuplicates Tracking 20453 as yet unmatched pairs. 443 records in RAM.
INFO 2026-06-08 09:30:34 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:27,549,522
INFO 2026-06-08 09:30:34 MarkDuplicates Tracking 21868 as yet unmatched pairs. 297 records in RAM.
INFO 2026-06-08 09:30:36 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:30,992,555
INFO 2026-06-08 09:30:36 MarkDuplicates Tracking 23429 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 09:30:39 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:32,292,165
INFO 2026-06-08 09:30:39 MarkDuplicates Tracking 24980 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 09:30:41 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:35,192,670
INFO 2026-06-08 09:30:41 MarkDuplicates Tracking 27225 as yet unmatched pairs. 666 records in RAM.
INFO 2026-06-08 09:30:43 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:37,822,521
INFO 2026-06-08 09:30:43 MarkDuplicates Tracking 28066 as yet unmatched pairs. 21 records in RAM.
INFO 2026-06-08 09:30:45 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:39,451,076
INFO 2026-06-08 09:30:45 MarkDuplicates Tracking 29882 as yet unmatched pairs. 493 records in RAM.
INFO 2026-06-08 09:30:48 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:42,457,304
INFO 2026-06-08 09:30:48 MarkDuplicates Tracking 31610 as yet unmatched pairs. 539 records in RAM.
INFO 2026-06-08 09:30:50 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:43,920,818
INFO 2026-06-08 09:30:50 MarkDuplicates Tracking 32664 as yet unmatched pairs. 46 records in RAM.
INFO 2026-06-08 09:30:52 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:45,882,364
INFO 2026-06-08 09:30:52 MarkDuplicates Tracking 34489 as yet unmatched pairs. 360 records in RAM.
INFO 2026-06-08 09:30:54 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:52,142,352
INFO 2026-06-08 09:30:54 MarkDuplicates Tracking 35684 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 09:30:56 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:58,576,228
INFO 2026-06-08 09:30:56 MarkDuplicates Tracking 38322 as yet unmatched pairs. 1022 records in RAM.
INFO 2026-06-08 09:30:58 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:66,940,042
INFO 2026-06-08 09:30:58 MarkDuplicates Tracking 39015 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 09:31:00 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:85,200,638
INFO 2026-06-08 09:31:00 MarkDuplicates Tracking 40388 as yet unmatched pairs. 298 records in RAM.
INFO 2026-06-08 09:31:02 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:93,582,653
INFO 2026-06-08 09:31:02 MarkDuplicates Tracking 41852 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-08 09:31:04 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:109,066,170
INFO 2026-06-08 09:31:04 MarkDuplicates Tracking 42979 as yet unmatched pairs. 34 records in RAM.
INFO 2026-06-08 09:31:06 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:110,401,441
INFO 2026-06-08 09:31:06 MarkDuplicates Tracking 45157 as yet unmatched pairs. 639 records in RAM.
INFO 2026-06-08 09:31:09 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:113,981,082
INFO 2026-06-08 09:31:09 MarkDuplicates Tracking 46753 as yet unmatched pairs. 853 records in RAM.
INFO 2026-06-08 09:31:11 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:116,949,283
INFO 2026-06-08 09:31:11 MarkDuplicates Tracking 47973 as yet unmatched pairs. 684 records in RAM.
INFO 2026-06-08 09:31:13 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:119,959,478
INFO 2026-06-08 09:31:13 MarkDuplicates Tracking 49579 as yet unmatched pairs. 768 records in RAM.
INFO 2026-06-08 09:31:15 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:145,746,831
INFO 2026-06-08 09:31:15 MarkDuplicates Tracking 49700 as yet unmatched pairs. 83 records in RAM.
INFO 2026-06-08 09:31:17 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:146,557,374
INFO 2026-06-08 09:31:17 MarkDuplicates Tracking 50568 as yet unmatched pairs. 15 records in RAM.
INFO 2026-06-08 09:31:18 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:148,607,006
INFO 2026-06-08 09:31:18 MarkDuplicates Tracking 51626 as yet unmatched pairs. 531 records in RAM.
INFO 2026-06-08 09:31:20 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:149,886,286
INFO 2026-06-08 09:31:20 MarkDuplicates Tracking 53034 as yet unmatched pairs. 1295 records in RAM.
INFO 2026-06-08 09:31:22 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:150,579,369
INFO 2026-06-08 09:31:22 MarkDuplicates Tracking 53134 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 09:31:24 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:151,441,054
INFO 2026-06-08 09:31:24 MarkDuplicates Tracking 55023 as yet unmatched pairs. 527 records in RAM.
INFO 2026-06-08 09:31:26 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:153,933,155
INFO 2026-06-08 09:31:26 MarkDuplicates Tracking 56051 as yet unmatched pairs. 146 records in RAM.
INFO 2026-06-08 09:31:28 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:154,597,957
INFO 2026-06-08 09:31:28 MarkDuplicates Tracking 57660 as yet unmatched pairs. 481 records in RAM.
INFO 2026-06-08 09:31:30 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:155,190,746
INFO 2026-06-08 09:31:30 MarkDuplicates Tracking 58875 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 09:31:32 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:155,868,719
INFO 2026-06-08 09:31:32 MarkDuplicates Tracking 60146 as yet unmatched pairs. 270 records in RAM.
INFO 2026-06-08 09:31:34 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:156,139,605
INFO 2026-06-08 09:31:34 MarkDuplicates Tracking 61844 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 09:31:36 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:159,051,678
INFO 2026-06-08 09:31:36 MarkDuplicates Tracking 63485 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 09:31:38 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:161,340,642
INFO 2026-06-08 09:31:38 MarkDuplicates Tracking 65357 as yet unmatched pairs. 569 records in RAM.
INFO 2026-06-08 09:31:40 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:168,231,544
INFO 2026-06-08 09:31:40 MarkDuplicates Tracking 67173 as yet unmatched pairs. 928 records in RAM.
INFO 2026-06-08 09:31:42 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:173,972,555
INFO 2026-06-08 09:31:42 MarkDuplicates Tracking 67789 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 09:31:44 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:182,876,455
INFO 2026-06-08 09:31:44 MarkDuplicates Tracking 69745 as yet unmatched pairs. 591 records in RAM.
INFO 2026-06-08 09:31:46 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:186,339,685
INFO 2026-06-08 09:31:46 MarkDuplicates Tracking 71179 as yet unmatched pairs. 616 records in RAM.
INFO 2026-06-08 09:31:48 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:201,386,758
INFO 2026-06-08 09:31:48 MarkDuplicates Tracking 72076 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 09:31:50 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:202,766,933
INFO 2026-06-08 09:31:50 MarkDuplicates Tracking 73608 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 09:31:52 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:204,161,312
INFO 2026-06-08 09:31:52 MarkDuplicates Tracking 75117 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 09:31:54 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:206,934,649
INFO 2026-06-08 09:31:54 MarkDuplicates Tracking 77742 as yet unmatched pairs. 1583 records in RAM.
INFO 2026-06-08 09:31:55 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:212,445,890
INFO 2026-06-08 09:31:55 MarkDuplicates Tracking 77837 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 09:31:58 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:224,433,877
INFO 2026-06-08 09:31:58 MarkDuplicates Tracking 79723 as yet unmatched pairs. 862 records in RAM.
INFO 2026-06-08 09:32:00 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:226,736,797
INFO 2026-06-08 09:32:00 MarkDuplicates Tracking 81060 as yet unmatched pairs. 775 records in RAM.
INFO 2026-06-08 09:32:02 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:229,342,374
INFO 2026-06-08 09:32:02 MarkDuplicates Tracking 82206 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 09:32:04 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:235,458,753
INFO 2026-06-08 09:32:04 MarkDuplicates Tracking 83967 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-08 09:32:06 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:244,863,673
INFO 2026-06-08 09:32:06 MarkDuplicates Tracking 86098 as yet unmatched pairs. 915 records in RAM.
INFO 2026-06-08 09:32:09 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:8,733,528
INFO 2026-06-08 09:32:09 MarkDuplicates Tracking 87002 as yet unmatched pairs. 86901 records in RAM.
INFO 2026-06-08 09:32:11 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:11,637,742
INFO 2026-06-08 09:32:11 MarkDuplicates Tracking 88745 as yet unmatched pairs. 88643 records in RAM.
INFO 2026-06-08 09:32:13 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:24,308,626
INFO 2026-06-08 09:32:13 MarkDuplicates Tracking 89904 as yet unmatched pairs. 89801 records in RAM.
INFO 2026-06-08 09:32:15 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:27,080,797
INFO 2026-06-08 09:32:15 MarkDuplicates Tracking 91963 as yet unmatched pairs. 91860 records in RAM.
INFO 2026-06-08 09:32:17 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:27,627,321
INFO 2026-06-08 09:32:17 MarkDuplicates Tracking 93079 as yet unmatched pairs. 92976 records in RAM.
INFO 2026-06-08 09:32:19 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:32,415,360
INFO 2026-06-08 09:32:19 MarkDuplicates Tracking 94941 as yet unmatched pairs. 94837 records in RAM.
INFO 2026-06-08 09:32:21 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:32:21 MarkDuplicates Tracking 186532 as yet unmatched pairs. 89350 records in RAM.
INFO 2026-06-08 09:32:24 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,393
INFO 2026-06-08 09:32:24 MarkDuplicates Tracking 769416 as yet unmatched pairs. 54372 records in RAM.
INFO 2026-06-08 09:32:26 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,411
INFO 2026-06-08 09:32:26 MarkDuplicates Tracking 815689 as yet unmatched pairs. 51596 records in RAM.
INFO 2026-06-08 09:32:28 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:38,585,762
INFO 2026-06-08 09:32:28 MarkDuplicates Tracking 842860 as yet unmatched pairs. 48860 records in RAM.
INFO 2026-06-08 09:32:30 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:43,570,398
INFO 2026-06-08 09:32:30 MarkDuplicates Tracking 841327 as yet unmatched pairs. 47326 records in RAM.
INFO 2026-06-08 09:32:32 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:48,495,708
INFO 2026-06-08 09:32:32 MarkDuplicates Tracking 839677 as yet unmatched pairs. 45672 records in RAM.
INFO 2026-06-08 09:32:34 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:55,291,109
INFO 2026-06-08 09:32:34 MarkDuplicates Tracking 838366 as yet unmatched pairs. 44361 records in RAM.
INFO 2026-06-08 09:32:36 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:63,899,492
INFO 2026-06-08 09:32:36 MarkDuplicates Tracking 836942 as yet unmatched pairs. 42936 records in RAM.
INFO 2026-06-08 09:32:38 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:70,088,089
INFO 2026-06-08 09:32:38 MarkDuplicates Tracking 836518 as yet unmatched pairs. 42512 records in RAM.
INFO 2026-06-08 09:32:40 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:73,902,414
INFO 2026-06-08 09:32:40 MarkDuplicates Tracking 837231 as yet unmatched pairs. 43224 records in RAM.
INFO 2026-06-08 09:32:42 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:75,646,802
INFO 2026-06-08 09:32:42 MarkDuplicates Tracking 832619 as yet unmatched pairs. 38607 records in RAM.
INFO 2026-06-08 09:32:44 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:86,751,981
INFO 2026-06-08 09:32:44 MarkDuplicates Tracking 831213 as yet unmatched pairs. 37199 records in RAM.
INFO 2026-06-08 09:32:46 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:96,612,462
INFO 2026-06-08 09:32:46 MarkDuplicates Tracking 830353 as yet unmatched pairs. 36339 records in RAM.
INFO 2026-06-08 09:32:48 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:101,002,796
INFO 2026-06-08 09:32:48 MarkDuplicates Tracking 832101 as yet unmatched pairs. 38085 records in RAM.
INFO 2026-06-08 09:32:50 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:108,680,898
INFO 2026-06-08 09:32:50 MarkDuplicates Tracking 827499 as yet unmatched pairs. 33479 records in RAM.
INFO 2026-06-08 09:32:52 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:109,836,986
INFO 2026-06-08 09:32:52 MarkDuplicates Tracking 826258 as yet unmatched pairs. 32237 records in RAM.
INFO 2026-06-08 09:32:54 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:112,401,562
INFO 2026-06-08 09:32:54 MarkDuplicates Tracking 825709 as yet unmatched pairs. 31682 records in RAM.
INFO 2026-06-08 09:32:57 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:113,934,317
INFO 2026-06-08 09:32:57 MarkDuplicates Tracking 824961 as yet unmatched pairs. 30924 records in RAM.
INFO 2026-06-08 09:32:58 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:128,318,121
INFO 2026-06-08 09:32:58 MarkDuplicates Tracking 823363 as yet unmatched pairs. 29324 records in RAM.
INFO 2026-06-08 09:33:01 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:144,399,749
INFO 2026-06-08 09:33:01 MarkDuplicates Tracking 821770 as yet unmatched pairs. 27730 records in RAM.
INFO 2026-06-08 09:33:03 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr2:159,885,172
INFO 2026-06-08 09:33:03 MarkDuplicates Tracking 820361 as yet unmatched pairs. 26320 records in RAM.
INFO 2026-06-08 09:33:05 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:172,475,003
INFO 2026-06-08 09:33:05 MarkDuplicates Tracking 819391 as yet unmatched pairs. 25346 records in RAM.
INFO 2026-06-08 09:33:06 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:178,118,090
INFO 2026-06-08 09:33:06 MarkDuplicates Tracking 817631 as yet unmatched pairs. 23583 records in RAM.
INFO 2026-06-08 09:33:08 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:186,641,468
INFO 2026-06-08 09:33:08 MarkDuplicates Tracking 816599 as yet unmatched pairs. 22549 records in RAM.
INFO 2026-06-08 09:33:11 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:189,004,336
INFO 2026-06-08 09:33:11 MarkDuplicates Tracking 816355 as yet unmatched pairs. 22305 records in RAM.
INFO 2026-06-08 09:33:13 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:190,930,436
INFO 2026-06-08 09:33:13 MarkDuplicates Tracking 813354 as yet unmatched pairs. 19304 records in RAM.
INFO 2026-06-08 09:33:15 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr2:201,380,726
INFO 2026-06-08 09:33:15 MarkDuplicates Tracking 811782 as yet unmatched pairs. 17731 records in RAM.
INFO 2026-06-08 09:33:17 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:207,624,254
INFO 2026-06-08 09:33:17 MarkDuplicates Tracking 810579 as yet unmatched pairs. 16527 records in RAM.
INFO 2026-06-08 09:33:19 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:215,410,048
INFO 2026-06-08 09:33:19 MarkDuplicates Tracking 809672 as yet unmatched pairs. 15617 records in RAM.
INFO 2026-06-08 09:33:21 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:217,804,600
INFO 2026-06-08 09:33:21 MarkDuplicates Tracking 809718 as yet unmatched pairs. 15663 records in RAM.
INFO 2026-06-08 09:33:24 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:218,265,861
INFO 2026-06-08 09:33:24 MarkDuplicates Tracking 806614 as yet unmatched pairs. 12552 records in RAM.
INFO 2026-06-08 09:33:25 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:219,418,614
INFO 2026-06-08 09:33:25 MarkDuplicates Tracking 806697 as yet unmatched pairs. 12632 records in RAM.
INFO 2026-06-08 09:33:28 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr2:219,570,297
INFO 2026-06-08 09:33:28 MarkDuplicates Tracking 802652 as yet unmatched pairs. 8582 records in RAM.
INFO 2026-06-08 09:33:29 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:229,840,850
INFO 2026-06-08 09:33:29 MarkDuplicates Tracking 801176 as yet unmatched pairs. 7104 records in RAM.
INFO 2026-06-08 09:33:32 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:232,378,773
INFO 2026-06-08 09:33:32 MarkDuplicates Tracking 800014 as yet unmatched pairs. 5940 records in RAM.
INFO 2026-06-08 09:33:34 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:237,357,842
INFO 2026-06-08 09:33:34 MarkDuplicates Tracking 797939 as yet unmatched pairs. 3865 records in RAM.
INFO 2026-06-08 09:33:36 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:239,990,127
INFO 2026-06-08 09:33:36 MarkDuplicates Tracking 796595 as yet unmatched pairs. 2520 records in RAM.
INFO 2026-06-08 09:33:38 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr2:241,348,176
INFO 2026-06-08 09:33:38 MarkDuplicates Tracking 794677 as yet unmatched pairs. 601 records in RAM.
INFO 2026-06-08 09:33:41 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr3:9,784,189
INFO 2026-06-08 09:33:41 MarkDuplicates Tracking 793220 as yet unmatched pairs. 44817 records in RAM.
INFO 2026-06-08 09:33:43 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 2s. Last read position: chr3:12,840,143
INFO 2026-06-08 09:33:43 MarkDuplicates Tracking 791480 as yet unmatched pairs. 43076 records in RAM.
INFO 2026-06-08 09:33:45 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:20,072,289
INFO 2026-06-08 09:33:45 MarkDuplicates Tracking 790035 as yet unmatched pairs. 41631 records in RAM.
INFO 2026-06-08 09:33:47 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr3:33,498,576
INFO 2026-06-08 09:33:47 MarkDuplicates Tracking 788659 as yet unmatched pairs. 40254 records in RAM.
INFO 2026-06-08 09:33:49 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr3:39,335,680
INFO 2026-06-08 09:33:49 MarkDuplicates Tracking 786925 as yet unmatched pairs. 38514 records in RAM.
INFO 2026-06-08 09:33:51 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:42,202,710
INFO 2026-06-08 09:33:51 MarkDuplicates Tracking 785836 as yet unmatched pairs. 37423 records in RAM.
INFO 2026-06-08 09:33:53 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr3:46,979,744
INFO 2026-06-08 09:33:53 MarkDuplicates Tracking 783993 as yet unmatched pairs. 35580 records in RAM.
INFO 2026-06-08 09:33:56 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:47,877,446
INFO 2026-06-08 09:33:56 MarkDuplicates Tracking 782902 as yet unmatched pairs. 34485 records in RAM.
INFO 2026-06-08 09:33:58 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:48,600,694
INFO 2026-06-08 09:33:58 MarkDuplicates Tracking 781023 as yet unmatched pairs. 32604 records in RAM.
INFO 2026-06-08 09:34:00 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr3:49,116,868
INFO 2026-06-08 09:34:00 MarkDuplicates Tracking 779388 as yet unmatched pairs. 30969 records in RAM.
INFO 2026-06-08 09:34:02 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:49,683,377
INFO 2026-06-08 09:34:02 MarkDuplicates Tracking 777457 as yet unmatched pairs. 29038 records in RAM.
INFO 2026-06-08 09:34:04 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:50,376,138
INFO 2026-06-08 09:34:04 MarkDuplicates Tracking 775781 as yet unmatched pairs. 27362 records in RAM.
INFO 2026-06-08 09:34:06 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr3:52,479,842
INFO 2026-06-08 09:34:06 MarkDuplicates Tracking 775134 as yet unmatched pairs. 26714 records in RAM.
INFO 2026-06-08 09:34:08 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr3:55,470,393
INFO 2026-06-08 09:34:08 MarkDuplicates Tracking 773357 as yet unmatched pairs. 24929 records in RAM.
INFO 2026-06-08 09:34:10 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr3:63,652,702
INFO 2026-06-08 09:34:10 MarkDuplicates Tracking 771342 as yet unmatched pairs. 22901 records in RAM.
INFO 2026-06-08 09:34:12 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:69,879,222
INFO 2026-06-08 09:34:12 MarkDuplicates Tracking 771002 as yet unmatched pairs. 22561 records in RAM.
INFO 2026-06-08 09:34:14 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr3:99,849,134
INFO 2026-06-08 09:34:14 MarkDuplicates Tracking 769496 as yet unmatched pairs. 21053 records in RAM.
INFO 2026-06-08 09:34:16 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:112,345,114
INFO 2026-06-08 09:34:16 MarkDuplicates Tracking 767622 as yet unmatched pairs. 19178 records in RAM.
INFO 2026-06-08 09:34:18 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:120,399,956
INFO 2026-06-08 09:34:18 MarkDuplicates Tracking 766562 as yet unmatched pairs. 18116 records in RAM.
INFO 2026-06-08 09:34:20 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr3:123,626,924
INFO 2026-06-08 09:34:20 MarkDuplicates Tracking 765244 as yet unmatched pairs. 16798 records in RAM.
INFO 2026-06-08 09:34:22 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr3:125,013,231
INFO 2026-06-08 09:34:22 MarkDuplicates Tracking 763391 as yet unmatched pairs. 14941 records in RAM.
INFO 2026-06-08 09:34:24 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:128,726,333
INFO 2026-06-08 09:34:24 MarkDuplicates Tracking 762626 as yet unmatched pairs. 14169 records in RAM.
INFO 2026-06-08 09:34:27 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:131,228,541
INFO 2026-06-08 09:34:27 MarkDuplicates Tracking 760185 as yet unmatched pairs. 11728 records in RAM.
INFO 2026-06-08 09:34:29 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:139,373,228
INFO 2026-06-08 09:34:29 MarkDuplicates Tracking 758625 as yet unmatched pairs. 10168 records in RAM.
INFO 2026-06-08 09:34:31 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:149,657,094
INFO 2026-06-08 09:34:31 MarkDuplicates Tracking 758520 as yet unmatched pairs. 10061 records in RAM.
INFO 2026-06-08 09:34:33 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr3:160,567,931
INFO 2026-06-08 09:34:33 MarkDuplicates Tracking 755476 as yet unmatched pairs. 7015 records in RAM.
INFO 2026-06-08 09:34:35 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr3:179,221,138
INFO 2026-06-08 09:34:35 MarkDuplicates Tracking 754496 as yet unmatched pairs. 6033 records in RAM.
INFO 2026-06-08 09:34:37 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:184,308,533
INFO 2026-06-08 09:34:37 MarkDuplicates Tracking 753405 as yet unmatched pairs. 4939 records in RAM.
INFO 2026-06-08 09:34:39 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr3:186,787,558
INFO 2026-06-08 09:34:39 MarkDuplicates Tracking 752207 as yet unmatched pairs. 3741 records in RAM.
INFO 2026-06-08 09:34:41 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr3:194,448,481
INFO 2026-06-08 09:34:41 MarkDuplicates Tracking 750335 as yet unmatched pairs. 1865 records in RAM.
INFO 2026-06-08 09:34:42 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr3:196,782,665
INFO 2026-06-08 09:34:42 MarkDuplicates Tracking 749190 as yet unmatched pairs. 718 records in RAM.
INFO 2026-06-08 09:34:45 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr4:1,212,203
INFO 2026-06-08 09:34:45 MarkDuplicates Tracking 748381 as yet unmatched pairs. 29878 records in RAM.
INFO 2026-06-08 09:34:47 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr4:2,926,093
INFO 2026-06-08 09:34:47 MarkDuplicates Tracking 746631 as yet unmatched pairs. 28117 records in RAM.
INFO 2026-06-08 09:34:49 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:5,640,646
INFO 2026-06-08 09:34:49 MarkDuplicates Tracking 743967 as yet unmatched pairs. 25453 records in RAM.
INFO 2026-06-08 09:34:51 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr4:8,291,464
INFO 2026-06-08 09:34:51 MarkDuplicates Tracking 742632 as yet unmatched pairs. 24115 records in RAM.
INFO 2026-06-08 09:34:53 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 2s. Last read position: chr4:20,546,041
INFO 2026-06-08 09:34:53 MarkDuplicates Tracking 740946 as yet unmatched pairs. 22428 records in RAM.
INFO 2026-06-08 09:34:55 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,484
INFO 2026-06-08 09:34:55 MarkDuplicates Tracking 742389 as yet unmatched pairs. 23870 records in RAM.
INFO 2026-06-08 09:34:57 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr4:39,755,655
INFO 2026-06-08 09:34:57 MarkDuplicates Tracking 738407 as yet unmatched pairs. 19888 records in RAM.
INFO 2026-06-08 09:34:59 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr4:54,270,726
INFO 2026-06-08 09:34:59 MarkDuplicates Tracking 737340 as yet unmatched pairs. 18818 records in RAM.
INFO 2026-06-08 09:35:02 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr4:57,110,090
INFO 2026-06-08 09:35:02 MarkDuplicates Tracking 738847 as yet unmatched pairs. 20322 records in RAM.
INFO 2026-06-08 09:35:04 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr4:76,739,689
INFO 2026-06-08 09:35:04 MarkDuplicates Tracking 733771 as yet unmatched pairs. 15241 records in RAM.
INFO 2026-06-08 09:35:06 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr4:82,851,438
INFO 2026-06-08 09:35:06 MarkDuplicates Tracking 732852 as yet unmatched pairs. 14322 records in RAM.
INFO 2026-06-08 09:35:08 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:87,491,653
INFO 2026-06-08 09:35:08 MarkDuplicates Tracking 733773 as yet unmatched pairs. 15226 records in RAM.
INFO 2026-06-08 09:35:10 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr4:94,451,986
INFO 2026-06-08 09:35:10 MarkDuplicates Tracking 731607 as yet unmatched pairs. 13060 records in RAM.
INFO 2026-06-08 09:35:12 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr4:106,095,511
INFO 2026-06-08 09:35:12 MarkDuplicates Tracking 728359 as yet unmatched pairs. 9812 records in RAM.
INFO 2026-06-08 09:35:14 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr4:118,889,107
INFO 2026-06-08 09:35:14 MarkDuplicates Tracking 727805 as yet unmatched pairs. 9258 records in RAM.
INFO 2026-06-08 09:35:16 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr4:122,352,982
INFO 2026-06-08 09:35:16 MarkDuplicates Tracking 725788 as yet unmatched pairs. 7241 records in RAM.
INFO 2026-06-08 09:35:17 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr4:142,429,194
INFO 2026-06-08 09:35:17 MarkDuplicates Tracking 724317 as yet unmatched pairs. 5768 records in RAM.
INFO 2026-06-08 09:35:20 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr4:151,175,535
INFO 2026-06-08 09:35:20 MarkDuplicates Tracking 723132 as yet unmatched pairs. 4582 records in RAM.
INFO 2026-06-08 09:35:22 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr4:168,384,641
INFO 2026-06-08 09:35:22 MarkDuplicates Tracking 721502 as yet unmatched pairs. 2952 records in RAM.
INFO 2026-06-08 09:35:24 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr4:174,239,036
INFO 2026-06-08 09:35:24 MarkDuplicates Tracking 719918 as yet unmatched pairs. 1368 records in RAM.
INFO 2026-06-08 09:35:26 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr5:240,386
INFO 2026-06-08 09:35:26 MarkDuplicates Tracking 718641 as yet unmatched pairs. 38354 records in RAM.
INFO 2026-06-08 09:35:29 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr5:13,901,281
INFO 2026-06-08 09:35:29 MarkDuplicates Tracking 716737 as yet unmatched pairs. 36436 records in RAM.
INFO 2026-06-08 09:35:30 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:24,491,799
INFO 2026-06-08 09:35:30 MarkDuplicates Tracking 715119 as yet unmatched pairs. 34812 records in RAM.
INFO 2026-06-08 09:35:33 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr5:38,869,043
INFO 2026-06-08 09:35:33 MarkDuplicates Tracking 714058 as yet unmatched pairs. 33749 records in RAM.
INFO 2026-06-08 09:35:35 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr5:55,400,383
INFO 2026-06-08 09:35:35 MarkDuplicates Tracking 712565 as yet unmatched pairs. 32256 records in RAM.
INFO 2026-06-08 09:35:36 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:67,152,656
INFO 2026-06-08 09:35:36 MarkDuplicates Tracking 711288 as yet unmatched pairs. 30978 records in RAM.
INFO 2026-06-08 09:35:38 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:72,197,050
INFO 2026-06-08 09:35:38 MarkDuplicates Tracking 710411 as yet unmatched pairs. 30101 records in RAM.
INFO 2026-06-08 09:35:40 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 2s. Last read position: chr5:77,785,024
INFO 2026-06-08 09:35:40 MarkDuplicates Tracking 708920 as yet unmatched pairs. 28609 records in RAM.
INFO 2026-06-08 09:35:42 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:83,542,066
INFO 2026-06-08 09:35:42 MarkDuplicates Tracking 707913 as yet unmatched pairs. 27601 records in RAM.
INFO 2026-06-08 09:35:44 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr5:102,867,303
INFO 2026-06-08 09:35:44 MarkDuplicates Tracking 707357 as yet unmatched pairs. 27043 records in RAM.
INFO 2026-06-08 09:35:46 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr5:118,988,354
INFO 2026-06-08 09:35:46 MarkDuplicates Tracking 705196 as yet unmatched pairs. 24882 records in RAM.
INFO 2026-06-08 09:35:48 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:131,162,604
INFO 2026-06-08 09:35:48 MarkDuplicates Tracking 704918 as yet unmatched pairs. 24601 records in RAM.
INFO 2026-06-08 09:35:50 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:134,788,521
INFO 2026-06-08 09:35:50 MarkDuplicates Tracking 702467 as yet unmatched pairs. 22145 records in RAM.
INFO 2026-06-08 09:35:53 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr5:138,810,073
INFO 2026-06-08 09:35:53 MarkDuplicates Tracking 701797 as yet unmatched pairs. 21475 records in RAM.
INFO 2026-06-08 09:35:54 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:140,648,498
INFO 2026-06-08 09:35:54 MarkDuplicates Tracking 699817 as yet unmatched pairs. 19474 records in RAM.
INFO 2026-06-08 09:35:57 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr5:141,214,328
INFO 2026-06-08 09:35:57 MarkDuplicates Tracking 698126 as yet unmatched pairs. 17783 records in RAM.
INFO 2026-06-08 09:35:58 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:141,626,013
INFO 2026-06-08 09:35:58 MarkDuplicates Tracking 696918 as yet unmatched pairs. 16575 records in RAM.
INFO 2026-06-08 09:36:01 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr5:149,836,853
INFO 2026-06-08 09:36:01 MarkDuplicates Tracking 695427 as yet unmatched pairs. 15083 records in RAM.
INFO 2026-06-08 09:36:03 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 2s. Last read position: chr5:150,134,925
INFO 2026-06-08 09:36:03 MarkDuplicates Tracking 695121 as yet unmatched pairs. 14777 records in RAM.
INFO 2026-06-08 09:36:05 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,153
INFO 2026-06-08 09:36:05 MarkDuplicates Tracking 709165 as yet unmatched pairs. 28821 records in RAM.
INFO 2026-06-08 09:36:07 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr5:151,101,446
INFO 2026-06-08 09:36:07 MarkDuplicates Tracking 690847 as yet unmatched pairs. 10502 records in RAM.
INFO 2026-06-08 09:36:09 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:157,791,745
INFO 2026-06-08 09:36:09 MarkDuplicates Tracking 689099 as yet unmatched pairs. 8754 records in RAM.
INFO 2026-06-08 09:36:11 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr5:171,391,412
INFO 2026-06-08 09:36:11 MarkDuplicates Tracking 691432 as yet unmatched pairs. 11086 records in RAM.
INFO 2026-06-08 09:36:13 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr5:175,513,500
INFO 2026-06-08 09:36:13 MarkDuplicates Tracking 686274 as yet unmatched pairs. 5928 records in RAM.
INFO 2026-06-08 09:36:15 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr5:177,489,498
INFO 2026-06-08 09:36:15 MarkDuplicates Tracking 686123 as yet unmatched pairs. 5777 records in RAM.
INFO 2026-06-08 09:36:17 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr5:179,710,053
INFO 2026-06-08 09:36:17 MarkDuplicates Tracking 683784 as yet unmatched pairs. 3432 records in RAM.
INFO 2026-06-08 09:36:19 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr5:179,878,325
INFO 2026-06-08 09:36:19 MarkDuplicates Tracking 681809 as yet unmatched pairs. 1456 records in RAM.
INFO 2026-06-08 09:36:21 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 2s. Last read position: chr6:2,959,245
INFO 2026-06-08 09:36:21 MarkDuplicates Tracking 680253 as yet unmatched pairs. 48346 records in RAM.
INFO 2026-06-08 09:36:23 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr6:7,602,660
INFO 2026-06-08 09:36:23 MarkDuplicates Tracking 678574 as yet unmatched pairs. 46667 records in RAM.
INFO 2026-06-08 09:36:25 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:18,249,754
INFO 2026-06-08 09:36:25 MarkDuplicates Tracking 677495 as yet unmatched pairs. 45585 records in RAM.
INFO 2026-06-08 09:36:27 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:26,204,740
INFO 2026-06-08 09:36:27 MarkDuplicates Tracking 677177 as yet unmatched pairs. 45266 records in RAM.
INFO 2026-06-08 09:36:29 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,779
INFO 2026-06-08 09:36:29 MarkDuplicates Tracking 675398 as yet unmatched pairs. 43487 records in RAM.
INFO 2026-06-08 09:36:31 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 2s. Last read position: chr6:30,888,922
INFO 2026-06-08 09:36:31 MarkDuplicates Tracking 673028 as yet unmatched pairs. 41116 records in RAM.
INFO 2026-06-08 09:36:33 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:31,632,094
INFO 2026-06-08 09:36:33 MarkDuplicates Tracking 672108 as yet unmatched pairs. 40196 records in RAM.
INFO 2026-06-08 09:36:36 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr6:31,816,357
INFO 2026-06-08 09:36:36 MarkDuplicates Tracking 669619 as yet unmatched pairs. 37704 records in RAM.
INFO 2026-06-08 09:36:37 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:31,982,133
INFO 2026-06-08 09:36:37 MarkDuplicates Tracking 668878 as yet unmatched pairs. 36961 records in RAM.
INFO 2026-06-08 09:36:39 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:31,999,027
INFO 2026-06-08 09:36:39 MarkDuplicates Tracking 672994 as yet unmatched pairs. 41077 records in RAM.
INFO 2026-06-08 09:36:41 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:32,027,099
INFO 2026-06-08 09:36:41 MarkDuplicates Tracking 671769 as yet unmatched pairs. 39852 records in RAM.
INFO 2026-06-08 09:36:43 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:32,052,959
INFO 2026-06-08 09:36:43 MarkDuplicates Tracking 666517 as yet unmatched pairs. 34600 records in RAM.
INFO 2026-06-08 09:36:45 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr6:32,126,138
INFO 2026-06-08 09:36:45 MarkDuplicates Tracking 664233 as yet unmatched pairs. 32315 records in RAM.
INFO 2026-06-08 09:36:47 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr6:33,201,842
INFO 2026-06-08 09:36:47 MarkDuplicates Tracking 662852 as yet unmatched pairs. 30934 records in RAM.
INFO 2026-06-08 09:36:49 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:33,446,610
INFO 2026-06-08 09:36:49 MarkDuplicates Tracking 661172 as yet unmatched pairs. 29237 records in RAM.
INFO 2026-06-08 09:36:51 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr6:36,229,088
INFO 2026-06-08 09:36:51 MarkDuplicates Tracking 659388 as yet unmatched pairs. 27451 records in RAM.
INFO 2026-06-08 09:36:53 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr6:42,673,846
INFO 2026-06-08 09:36:53 MarkDuplicates Tracking 657956 as yet unmatched pairs. 26017 records in RAM.
INFO 2026-06-08 09:36:55 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:43,432,620
INFO 2026-06-08 09:36:55 MarkDuplicates Tracking 656364 as yet unmatched pairs. 24425 records in RAM.
INFO 2026-06-08 09:36:57 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr6:46,248,812
INFO 2026-06-08 09:36:57 MarkDuplicates Tracking 654651 as yet unmatched pairs. 22711 records in RAM.
INFO 2026-06-08 09:36:59 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr6:56,552,298
INFO 2026-06-08 09:36:59 MarkDuplicates Tracking 653250 as yet unmatched pairs. 21308 records in RAM.
INFO 2026-06-08 09:37:01 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:75,113,691
INFO 2026-06-08 09:37:01 MarkDuplicates Tracking 652654 as yet unmatched pairs. 20707 records in RAM.
INFO 2026-06-08 09:37:03 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr6:83,169,183
INFO 2026-06-08 09:37:03 MarkDuplicates Tracking 650695 as yet unmatched pairs. 18748 records in RAM.
INFO 2026-06-08 09:37:05 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr6:90,552,107
INFO 2026-06-08 09:37:05 MarkDuplicates Tracking 649240 as yet unmatched pairs. 17292 records in RAM.
INFO 2026-06-08 09:37:07 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr6:108,761,993
INFO 2026-06-08 09:37:07 MarkDuplicates Tracking 647621 as yet unmatched pairs. 15672 records in RAM.
INFO 2026-06-08 09:37:09 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr6:112,201,687
INFO 2026-06-08 09:37:09 MarkDuplicates Tracking 646486 as yet unmatched pairs. 14536 records in RAM.
INFO 2026-06-08 09:37:11 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr6:126,116,165
INFO 2026-06-08 09:37:11 MarkDuplicates Tracking 644619 as yet unmatched pairs. 12668 records in RAM.
INFO 2026-06-08 09:37:13 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr6:135,189,795
INFO 2026-06-08 09:37:13 MarkDuplicates Tracking 643369 as yet unmatched pairs. 11412 records in RAM.
INFO 2026-06-08 09:37:15 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr6:144,444,309
INFO 2026-06-08 09:37:15 MarkDuplicates Tracking 642143 as yet unmatched pairs. 10184 records in RAM.
INFO 2026-06-08 09:37:17 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr6:151,351,748
INFO 2026-06-08 09:37:17 MarkDuplicates Tracking 640883 as yet unmatched pairs. 8924 records in RAM.
INFO 2026-06-08 09:37:19 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr6:151,880,662
INFO 2026-06-08 09:37:19 MarkDuplicates Tracking 640479 as yet unmatched pairs. 8518 records in RAM.
INFO 2026-06-08 09:37:21 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr6:152,989,996
INFO 2026-06-08 09:37:21 MarkDuplicates Tracking 636955 as yet unmatched pairs. 4994 records in RAM.
INFO 2026-06-08 09:37:23 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr6:158,769,797
INFO 2026-06-08 09:37:23 MarkDuplicates Tracking 635790 as yet unmatched pairs. 3829 records in RAM.
INFO 2026-06-08 09:37:25 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr6:163,415,175
INFO 2026-06-08 09:37:25 MarkDuplicates Tracking 634300 as yet unmatched pairs. 2339 records in RAM.
INFO 2026-06-08 09:37:27 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr6:169,668,660
INFO 2026-06-08 09:37:27 MarkDuplicates Tracking 632412 as yet unmatched pairs. 451 records in RAM.
INFO 2026-06-08 09:37:30 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr7:2,355,390
INFO 2026-06-08 09:37:30 MarkDuplicates Tracking 630750 as yet unmatched pairs. 43854 records in RAM.
INFO 2026-06-08 09:37:31 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:5,370,730
INFO 2026-06-08 09:37:31 MarkDuplicates Tracking 630163 as yet unmatched pairs. 43262 records in RAM.
INFO 2026-06-08 09:37:33 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,300
INFO 2026-06-08 09:37:33 MarkDuplicates Tracking 638556 as yet unmatched pairs. 51655 records in RAM.
INFO 2026-06-08 09:37:36 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr7:6,023,409
INFO 2026-06-08 09:37:36 MarkDuplicates Tracking 625551 as yet unmatched pairs. 38650 records in RAM.
INFO 2026-06-08 09:37:37 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:18,585,339
INFO 2026-06-08 09:37:37 MarkDuplicates Tracking 624137 as yet unmatched pairs. 37236 records in RAM.
INFO 2026-06-08 09:37:40 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 2s. Last read position: chr7:27,182,928
INFO 2026-06-08 09:37:40 MarkDuplicates Tracking 622649 as yet unmatched pairs. 35747 records in RAM.
INFO 2026-06-08 09:37:42 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr7:37,907,533
INFO 2026-06-08 09:37:42 MarkDuplicates Tracking 624908 as yet unmatched pairs. 38002 records in RAM.
INFO 2026-06-08 09:37:44 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr7:40,078,755
INFO 2026-06-08 09:37:44 MarkDuplicates Tracking 619424 as yet unmatched pairs. 32518 records in RAM.
INFO 2026-06-08 09:37:46 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:44,572,952
INFO 2026-06-08 09:37:46 MarkDuplicates Tracking 618062 as yet unmatched pairs. 31156 records in RAM.
INFO 2026-06-08 09:37:48 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 2s. Last read position: chr7:47,400,883
INFO 2026-06-08 09:37:48 MarkDuplicates Tracking 616645 as yet unmatched pairs. 29738 records in RAM.
INFO 2026-06-08 09:37:50 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr7:64,991,780
INFO 2026-06-08 09:37:50 MarkDuplicates Tracking 614765 as yet unmatched pairs. 27857 records in RAM.
INFO 2026-06-08 09:37:51 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,355
INFO 2026-06-08 09:37:51 MarkDuplicates Tracking 613899 as yet unmatched pairs. 26990 records in RAM.
INFO 2026-06-08 09:37:53 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr7:74,796,637
INFO 2026-06-08 09:37:53 MarkDuplicates Tracking 612575 as yet unmatched pairs. 25666 records in RAM.
INFO 2026-06-08 09:37:55 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:76,054,918
INFO 2026-06-08 09:37:55 MarkDuplicates Tracking 612402 as yet unmatched pairs. 25493 records in RAM.
INFO 2026-06-08 09:37:57 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 2s. Last read position: chr7:77,039,961
INFO 2026-06-08 09:37:57 MarkDuplicates Tracking 610167 as yet unmatched pairs. 23258 records in RAM.
INFO 2026-06-08 09:37:59 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:92,102,816
INFO 2026-06-08 09:37:59 MarkDuplicates Tracking 609776 as yet unmatched pairs. 22866 records in RAM.
INFO 2026-06-08 09:38:01 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr7:94,628,161
INFO 2026-06-08 09:38:01 MarkDuplicates Tracking 607459 as yet unmatched pairs. 20546 records in RAM.
INFO 2026-06-08 09:38:03 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 2s. Last read position: chr7:99,486,794
INFO 2026-06-08 09:38:03 MarkDuplicates Tracking 606064 as yet unmatched pairs. 19150 records in RAM.
INFO 2026-06-08 09:38:05 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr7:100,606,499
INFO 2026-06-08 09:38:05 MarkDuplicates Tracking 604646 as yet unmatched pairs. 17732 records in RAM.
INFO 2026-06-08 09:38:07 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr7:101,240,172
INFO 2026-06-08 09:38:07 MarkDuplicates Tracking 603268 as yet unmatched pairs. 16350 records in RAM.
INFO 2026-06-08 09:38:09 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr7:102,640,280
INFO 2026-06-08 09:38:09 MarkDuplicates Tracking 602512 as yet unmatched pairs. 15591 records in RAM.
INFO 2026-06-08 09:38:11 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr7:107,932,300
INFO 2026-06-08 09:38:11 MarkDuplicates Tracking 600961 as yet unmatched pairs. 14032 records in RAM.
INFO 2026-06-08 09:38:14 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 2s. Last read position: chr7:122,091,755
INFO 2026-06-08 09:38:14 MarkDuplicates Tracking 599281 as yet unmatched pairs. 12349 records in RAM.
INFO 2026-06-08 09:38:16 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:128,089,614
INFO 2026-06-08 09:38:16 MarkDuplicates Tracking 599933 as yet unmatched pairs. 13000 records in RAM.
INFO 2026-06-08 09:38:18 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 2s. Last read position: chr7:130,497,967
INFO 2026-06-08 09:38:18 MarkDuplicates Tracking 597002 as yet unmatched pairs. 10069 records in RAM.
INFO 2026-06-08 09:38:20 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 2s. Last read position: chr7:135,598,121
INFO 2026-06-08 09:38:20 MarkDuplicates Tracking 595117 as yet unmatched pairs. 8179 records in RAM.
INFO 2026-06-08 09:38:22 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr7:140,343,380
INFO 2026-06-08 09:38:22 MarkDuplicates Tracking 594005 as yet unmatched pairs. 7067 records in RAM.
INFO 2026-06-08 09:38:24 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 2s. Last read position: chr7:143,390,578
INFO 2026-06-08 09:38:24 MarkDuplicates Tracking 594541 as yet unmatched pairs. 7603 records in RAM.
INFO 2026-06-08 09:38:26 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr7:149,266,532
INFO 2026-06-08 09:38:26 MarkDuplicates Tracking 591325 as yet unmatched pairs. 4387 records in RAM.
INFO 2026-06-08 09:38:28 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr7:151,141,899
INFO 2026-06-08 09:38:28 MarkDuplicates Tracking 589323 as yet unmatched pairs. 2385 records in RAM.
INFO 2026-06-08 09:38:30 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr7:154,892,327
INFO 2026-06-08 09:38:30 MarkDuplicates Tracking 587840 as yet unmatched pairs. 901 records in RAM.
INFO 2026-06-08 09:38:32 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr8:9,720,503
INFO 2026-06-08 09:38:32 MarkDuplicates Tracking 586296 as yet unmatched pairs. 30993 records in RAM.
INFO 2026-06-08 09:38:34 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:17,963,212
INFO 2026-06-08 09:38:34 MarkDuplicates Tracking 584942 as yet unmatched pairs. 29639 records in RAM.
INFO 2026-06-08 09:38:36 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr8:22,617,541
INFO 2026-06-08 09:38:36 MarkDuplicates Tracking 583759 as yet unmatched pairs. 28456 records in RAM.
INFO 2026-06-08 09:38:38 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 2s. Last read position: chr8:27,609,074
INFO 2026-06-08 09:38:38 MarkDuplicates Tracking 582391 as yet unmatched pairs. 27088 records in RAM.
INFO 2026-06-08 09:38:40 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:36,711,458
INFO 2026-06-08 09:38:40 MarkDuplicates Tracking 579789 as yet unmatched pairs. 24485 records in RAM.
INFO 2026-06-08 09:38:42 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 2s. Last read position: chr8:38,412,381
INFO 2026-06-08 09:38:42 MarkDuplicates Tracking 578460 as yet unmatched pairs. 23155 records in RAM.
INFO 2026-06-08 09:38:44 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 2s. Last read position: chr8:39,055,766
INFO 2026-06-08 09:38:44 MarkDuplicates Tracking 577106 as yet unmatched pairs. 21801 records in RAM.
INFO 2026-06-08 09:38:46 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:47,858,557
INFO 2026-06-08 09:38:46 MarkDuplicates Tracking 575513 as yet unmatched pairs. 20207 records in RAM.
INFO 2026-06-08 09:38:48 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 2s. Last read position: chr8:56,978,134
INFO 2026-06-08 09:38:48 MarkDuplicates Tracking 573631 as yet unmatched pairs. 18325 records in RAM.
INFO 2026-06-08 09:38:50 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 2s. Last read position: chr8:70,594,558
INFO 2026-06-08 09:38:50 MarkDuplicates Tracking 572584 as yet unmatched pairs. 17278 records in RAM.
INFO 2026-06-08 09:38:52 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:91,957,668
INFO 2026-06-08 09:38:52 MarkDuplicates Tracking 570944 as yet unmatched pairs. 15636 records in RAM.
INFO 2026-06-08 09:38:54 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr8:98,044,964
INFO 2026-06-08 09:38:54 MarkDuplicates Tracking 571173 as yet unmatched pairs. 15865 records in RAM.
INFO 2026-06-08 09:38:56 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr8:100,721,489
INFO 2026-06-08 09:38:56 MarkDuplicates Tracking 570654 as yet unmatched pairs. 15344 records in RAM.
INFO 2026-06-08 09:38:58 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:109,445,328
INFO 2026-06-08 09:38:58 MarkDuplicates Tracking 567299 as yet unmatched pairs. 11989 records in RAM.
INFO 2026-06-08 09:39:00 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr8:120,541,943
INFO 2026-06-08 09:39:00 MarkDuplicates Tracking 565362 as yet unmatched pairs. 10051 records in RAM.
INFO 2026-06-08 09:39:03 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 2s. Last read position: chr8:140,572,900
INFO 2026-06-08 09:39:03 MarkDuplicates Tracking 563869 as yet unmatched pairs. 8557 records in RAM.
INFO 2026-06-08 09:39:04 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,727,072
INFO 2026-06-08 09:39:04 MarkDuplicates Tracking 561995 as yet unmatched pairs. 6682 records in RAM.
INFO 2026-06-08 09:39:06 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,620
INFO 2026-06-08 09:39:06 MarkDuplicates Tracking 560865 as yet unmatched pairs. 5552 records in RAM.
INFO 2026-06-08 09:39:08 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,562
INFO 2026-06-08 09:39:08 MarkDuplicates Tracking 560713 as yet unmatched pairs. 5400 records in RAM.
INFO 2026-06-08 09:39:10 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,992,244
INFO 2026-06-08 09:39:10 MarkDuplicates Tracking 558200 as yet unmatched pairs. 2887 records in RAM.
INFO 2026-06-08 09:39:12 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:144,519,930
INFO 2026-06-08 09:39:12 MarkDuplicates Tracking 556191 as yet unmatched pairs. 878 records in RAM.
INFO 2026-06-08 09:39:14 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 2s. Last read position: chr9:4,718,439
INFO 2026-06-08 09:39:14 MarkDuplicates Tracking 554707 as yet unmatched pairs. 39190 records in RAM.
INFO 2026-06-08 09:39:17 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr9:16,435,759
INFO 2026-06-08 09:39:17 MarkDuplicates Tracking 553566 as yet unmatched pairs. 38048 records in RAM.
INFO 2026-06-08 09:39:18 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:33,120,462
INFO 2026-06-08 09:39:18 MarkDuplicates Tracking 552231 as yet unmatched pairs. 36711 records in RAM.
INFO 2026-06-08 09:39:21 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr9:35,072,368
INFO 2026-06-08 09:39:21 MarkDuplicates Tracking 550917 as yet unmatched pairs. 35397 records in RAM.
INFO 2026-06-08 09:39:23 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 2s. Last read position: chr9:35,710,633
INFO 2026-06-08 09:39:23 MarkDuplicates Tracking 549710 as yet unmatched pairs. 34188 records in RAM.
INFO 2026-06-08 09:39:25 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr9:37,919,864
INFO 2026-06-08 09:39:25 MarkDuplicates Tracking 546779 as yet unmatched pairs. 31253 records in RAM.
INFO 2026-06-08 09:39:27 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 2s. Last read position: chr9:73,158,751
INFO 2026-06-08 09:39:27 MarkDuplicates Tracking 546426 as yet unmatched pairs. 30900 records in RAM.
INFO 2026-06-08 09:39:29 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 2s. Last read position: chr9:84,813,846
INFO 2026-06-08 09:39:29 MarkDuplicates Tracking 544425 as yet unmatched pairs. 28899 records in RAM.
INFO 2026-06-08 09:39:31 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:92,514,859
INFO 2026-06-08 09:39:31 MarkDuplicates Tracking 542737 as yet unmatched pairs. 27210 records in RAM.
INFO 2026-06-08 09:39:33 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr9:95,941,479
INFO 2026-06-08 09:39:33 MarkDuplicates Tracking 541174 as yet unmatched pairs. 25647 records in RAM.
INFO 2026-06-08 09:39:35 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr9:99,221,815
INFO 2026-06-08 09:39:35 MarkDuplicates Tracking 539281 as yet unmatched pairs. 23754 records in RAM.
INFO 2026-06-08 09:39:37 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:110,387,405
INFO 2026-06-08 09:39:37 MarkDuplicates Tracking 537855 as yet unmatched pairs. 22328 records in RAM.
INFO 2026-06-08 09:39:39 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr9:114,235,619
INFO 2026-06-08 09:39:39 MarkDuplicates Tracking 537152 as yet unmatched pairs. 21623 records in RAM.
INFO 2026-06-08 09:39:41 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr9:115,086,168
INFO 2026-06-08 09:39:41 MarkDuplicates Tracking 535706 as yet unmatched pairs. 20177 records in RAM.
INFO 2026-06-08 09:39:43 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:121,324,624
INFO 2026-06-08 09:39:43 MarkDuplicates Tracking 534046 as yet unmatched pairs. 18517 records in RAM.
INFO 2026-06-08 09:39:45 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr9:125,236,640
INFO 2026-06-08 09:39:45 MarkDuplicates Tracking 531890 as yet unmatched pairs. 16360 records in RAM.
INFO 2026-06-08 09:39:47 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr9:127,818,204
INFO 2026-06-08 09:39:47 MarkDuplicates Tracking 530495 as yet unmatched pairs. 14964 records in RAM.
INFO 2026-06-08 09:39:49 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:128,584,284
INFO 2026-06-08 09:39:49 MarkDuplicates Tracking 528618 as yet unmatched pairs. 13087 records in RAM.
INFO 2026-06-08 09:39:52 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 2s. Last read position: chr9:129,177,870
INFO 2026-06-08 09:39:52 MarkDuplicates Tracking 527261 as yet unmatched pairs. 11730 records in RAM.
INFO 2026-06-08 09:39:54 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr9:131,130,767
INFO 2026-06-08 09:39:54 MarkDuplicates Tracking 525271 as yet unmatched pairs. 9739 records in RAM.
INFO 2026-06-08 09:39:56 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr9:133,019,502
INFO 2026-06-08 09:39:56 MarkDuplicates Tracking 523545 as yet unmatched pairs. 8013 records in RAM.
INFO 2026-06-08 09:39:58 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 2s. Last read position: chr9:134,730,256
INFO 2026-06-08 09:39:58 MarkDuplicates Tracking 522272 as yet unmatched pairs. 6740 records in RAM.
INFO 2026-06-08 09:40:00 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr9:136,454,125
INFO 2026-06-08 09:40:00 MarkDuplicates Tracking 520343 as yet unmatched pairs. 4811 records in RAM.
INFO 2026-06-08 09:40:02 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:136,921,103
INFO 2026-06-08 09:40:02 MarkDuplicates Tracking 518297 as yet unmatched pairs. 2763 records in RAM.
INFO 2026-06-08 09:40:04 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr9:137,264,247
INFO 2026-06-08 09:40:04 MarkDuplicates Tracking 516755 as yet unmatched pairs. 1221 records in RAM.
INFO 2026-06-08 09:40:06 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr10:3,163,817
INFO 2026-06-08 09:40:06 MarkDuplicates Tracking 515245 as yet unmatched pairs. 35252 records in RAM.
INFO 2026-06-08 09:40:08 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:12,173,788
INFO 2026-06-08 09:40:08 MarkDuplicates Tracking 513914 as yet unmatched pairs. 33921 records in RAM.
INFO 2026-06-08 09:40:10 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr10:17,235,287
INFO 2026-06-08 09:40:10 MarkDuplicates Tracking 514409 as yet unmatched pairs. 34415 records in RAM.
INFO 2026-06-08 09:40:12 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr10:27,538,012
INFO 2026-06-08 09:40:12 MarkDuplicates Tracking 510970 as yet unmatched pairs. 30976 records in RAM.
INFO 2026-06-08 09:40:14 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:32,019,876
INFO 2026-06-08 09:40:14 MarkDuplicates Tracking 510829 as yet unmatched pairs. 30835 records in RAM.
INFO 2026-06-08 09:40:16 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr10:34,317,311
INFO 2026-06-08 09:40:16 MarkDuplicates Tracking 508233 as yet unmatched pairs. 28239 records in RAM.
INFO 2026-06-08 09:40:19 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 2s. Last read position: chr10:45,827,162
INFO 2026-06-08 09:40:19 MarkDuplicates Tracking 506702 as yet unmatched pairs. 26707 records in RAM.
INFO 2026-06-08 09:40:20 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:50,056,782
INFO 2026-06-08 09:40:20 MarkDuplicates Tracking 505566 as yet unmatched pairs. 25571 records in RAM.
INFO 2026-06-08 09:40:22 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr10:63,189,431
INFO 2026-06-08 09:40:22 MarkDuplicates Tracking 504610 as yet unmatched pairs. 24615 records in RAM.
INFO 2026-06-08 09:40:24 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:70,421,748
INFO 2026-06-08 09:40:24 MarkDuplicates Tracking 503067 as yet unmatched pairs. 23072 records in RAM.
INFO 2026-06-08 09:40:26 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr10:73,768,890
INFO 2026-06-08 09:40:26 MarkDuplicates Tracking 501607 as yet unmatched pairs. 21612 records in RAM.
INFO 2026-06-08 09:40:29 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr10:75,400,224
INFO 2026-06-08 09:40:29 MarkDuplicates Tracking 500089 as yet unmatched pairs. 20094 records in RAM.
INFO 2026-06-08 09:40:31 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:79,305,204
INFO 2026-06-08 09:40:31 MarkDuplicates Tracking 499039 as yet unmatched pairs. 19038 records in RAM.
INFO 2026-06-08 09:40:33 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr10:87,152,074
INFO 2026-06-08 09:40:33 MarkDuplicates Tracking 497043 as yet unmatched pairs. 17042 records in RAM.
INFO 2026-06-08 09:40:35 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr10:88,947,260
INFO 2026-06-08 09:40:35 MarkDuplicates Tracking 498534 as yet unmatched pairs. 18533 records in RAM.
INFO 2026-06-08 09:40:37 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:94,171,187
INFO 2026-06-08 09:40:37 MarkDuplicates Tracking 494877 as yet unmatched pairs. 14875 records in RAM.
INFO 2026-06-08 09:40:39 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 2s. Last read position: chr10:96,750,555
INFO 2026-06-08 09:40:39 MarkDuplicates Tracking 492846 as yet unmatched pairs. 12842 records in RAM.
INFO 2026-06-08 09:40:41 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 2s. Last read position: chr10:100,916,997
INFO 2026-06-08 09:40:41 MarkDuplicates Tracking 491254 as yet unmatched pairs. 11248 records in RAM.
INFO 2026-06-08 09:40:43 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:102,367,139
INFO 2026-06-08 09:40:43 MarkDuplicates Tracking 489783 as yet unmatched pairs. 9772 records in RAM.
INFO 2026-06-08 09:40:45 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 2s. Last read position: chr10:104,001,539
INFO 2026-06-08 09:40:45 MarkDuplicates Tracking 488143 as yet unmatched pairs. 8132 records in RAM.
INFO 2026-06-08 09:40:47 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr10:114,315,641
INFO 2026-06-08 09:40:47 MarkDuplicates Tracking 486685 as yet unmatched pairs. 6670 records in RAM.
INFO 2026-06-08 09:40:49 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:119,174,546
INFO 2026-06-08 09:40:49 MarkDuplicates Tracking 485870 as yet unmatched pairs. 5855 records in RAM.
INFO 2026-06-08 09:40:51 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr10:121,565,650
INFO 2026-06-08 09:40:51 MarkDuplicates Tracking 486444 as yet unmatched pairs. 6429 records in RAM.
INFO 2026-06-08 09:40:53 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:122,613,993
INFO 2026-06-08 09:40:53 MarkDuplicates Tracking 483023 as yet unmatched pairs. 3008 records in RAM.
INFO 2026-06-08 09:40:55 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:127,175,928
INFO 2026-06-08 09:40:55 MarkDuplicates Tracking 481636 as yet unmatched pairs. 1621 records in RAM.
INFO 2026-06-08 09:40:57 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr11:294,818
INFO 2026-06-08 09:40:57 MarkDuplicates Tracking 479651 as yet unmatched pairs. 68884 records in RAM.
INFO 2026-06-08 09:40:59 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 2s. Last read position: chr11:497,991
INFO 2026-06-08 09:40:59 MarkDuplicates Tracking 478794 as yet unmatched pairs. 68026 records in RAM.
INFO 2026-06-08 09:41:01 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:972,240
INFO 2026-06-08 09:41:01 MarkDuplicates Tracking 476826 as yet unmatched pairs. 66058 records in RAM.
INFO 2026-06-08 09:41:04 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr11:1,230,937
INFO 2026-06-08 09:41:04 MarkDuplicates Tracking 479417 as yet unmatched pairs. 68649 records in RAM.
INFO 2026-06-08 09:41:06 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr11:1,241,426
INFO 2026-06-08 09:41:06 MarkDuplicates Tracking 474905 as yet unmatched pairs. 64137 records in RAM.
INFO 2026-06-08 09:41:07 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,117
INFO 2026-06-08 09:41:07 MarkDuplicates Tracking 473471 as yet unmatched pairs. 62703 records in RAM.
INFO 2026-06-08 09:41:09 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,735
INFO 2026-06-08 09:41:09 MarkDuplicates Tracking 488497 as yet unmatched pairs. 77729 records in RAM.
INFO 2026-06-08 09:41:11 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,360
INFO 2026-06-08 09:41:11 MarkDuplicates Tracking 474270 as yet unmatched pairs. 63502 records in RAM.
INFO 2026-06-08 09:41:12 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,133
INFO 2026-06-08 09:41:12 MarkDuplicates Tracking 472034 as yet unmatched pairs. 61265 records in RAM.
INFO 2026-06-08 09:41:14 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,308
INFO 2026-06-08 09:41:14 MarkDuplicates Tracking 471905 as yet unmatched pairs. 61136 records in RAM.
INFO 2026-06-08 09:41:16 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,349
INFO 2026-06-08 09:41:16 MarkDuplicates Tracking 474767 as yet unmatched pairs. 63998 records in RAM.
INFO 2026-06-08 09:41:17 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,130
INFO 2026-06-08 09:41:17 MarkDuplicates Tracking 471301 as yet unmatched pairs. 60532 records in RAM.
INFO 2026-06-08 09:41:19 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,985
INFO 2026-06-08 09:41:19 MarkDuplicates Tracking 470802 as yet unmatched pairs. 60033 records in RAM.
INFO 2026-06-08 09:41:21 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,992
INFO 2026-06-08 09:41:21 MarkDuplicates Tracking 469379 as yet unmatched pairs. 58609 records in RAM.
INFO 2026-06-08 09:41:23 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:1,251,387
INFO 2026-06-08 09:41:23 MarkDuplicates Tracking 473953 as yet unmatched pairs. 63183 records in RAM.
INFO 2026-06-08 09:41:25 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr11:1,260,005
INFO 2026-06-08 09:41:25 MarkDuplicates Tracking 470734 as yet unmatched pairs. 59964 records in RAM.
INFO 2026-06-08 09:41:27 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr11:2,395,445
INFO 2026-06-08 09:41:27 MarkDuplicates Tracking 466680 as yet unmatched pairs. 55910 records in RAM.
INFO 2026-06-08 09:41:29 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr11:6,477,047
INFO 2026-06-08 09:41:29 MarkDuplicates Tracking 462442 as yet unmatched pairs. 51669 records in RAM.
INFO 2026-06-08 09:41:31 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr11:7,987,629
INFO 2026-06-08 09:41:31 MarkDuplicates Tracking 461135 as yet unmatched pairs. 50362 records in RAM.
INFO 2026-06-08 09:41:33 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:10,563,773
INFO 2026-06-08 09:41:33 MarkDuplicates Tracking 458755 as yet unmatched pairs. 47982 records in RAM.
INFO 2026-06-08 09:41:35 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr11:13,354,330
INFO 2026-06-08 09:41:35 MarkDuplicates Tracking 457551 as yet unmatched pairs. 46778 records in RAM.
INFO 2026-06-08 09:41:38 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr11:20,095,676
INFO 2026-06-08 09:41:38 MarkDuplicates Tracking 456207 as yet unmatched pairs. 45421 records in RAM.
INFO 2026-06-08 09:41:39 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:33,717,442
INFO 2026-06-08 09:41:39 MarkDuplicates Tracking 455105 as yet unmatched pairs. 44319 records in RAM.
INFO 2026-06-08 09:41:42 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr11:43,414,658
INFO 2026-06-08 09:41:42 MarkDuplicates Tracking 453326 as yet unmatched pairs. 42540 records in RAM.
INFO 2026-06-08 09:41:44 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr11:46,542,379
INFO 2026-06-08 09:41:44 MarkDuplicates Tracking 451985 as yet unmatched pairs. 41198 records in RAM.
INFO 2026-06-08 09:41:46 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr11:49,175,890
INFO 2026-06-08 09:41:46 MarkDuplicates Tracking 450193 as yet unmatched pairs. 39406 records in RAM.
INFO 2026-06-08 09:41:48 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr11:58,617,423
INFO 2026-06-08 09:41:48 MarkDuplicates Tracking 448663 as yet unmatched pairs. 37875 records in RAM.
INFO 2026-06-08 09:41:50 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:61,776,359
INFO 2026-06-08 09:41:50 MarkDuplicates Tracking 447185 as yet unmatched pairs. 36393 records in RAM.
INFO 2026-06-08 09:41:52 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 2s. Last read position: chr11:62,519,077
INFO 2026-06-08 09:41:52 MarkDuplicates Tracking 446048 as yet unmatched pairs. 35255 records in RAM.
INFO 2026-06-08 09:41:54 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr11:62,528,595
INFO 2026-06-08 09:41:54 MarkDuplicates Tracking 445748 as yet unmatched pairs. 34955 records in RAM.
INFO 2026-06-08 09:41:56 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:62,611,455
INFO 2026-06-08 09:41:56 MarkDuplicates Tracking 443595 as yet unmatched pairs. 32800 records in RAM.
INFO 2026-06-08 09:41:58 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr11:63,750,033
INFO 2026-06-08 09:41:58 MarkDuplicates Tracking 442263 as yet unmatched pairs. 31468 records in RAM.
INFO 2026-06-08 09:42:00 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr11:64,622,791
INFO 2026-06-08 09:42:00 MarkDuplicates Tracking 440149 as yet unmatched pairs. 29354 records in RAM.
INFO 2026-06-08 09:42:02 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:65,182,763
INFO 2026-06-08 09:42:02 MarkDuplicates Tracking 438344 as yet unmatched pairs. 27547 records in RAM.
INFO 2026-06-08 09:42:04 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr11:65,606,066
INFO 2026-06-08 09:42:04 MarkDuplicates Tracking 436129 as yet unmatched pairs. 25330 records in RAM.
INFO 2026-06-08 09:42:06 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr11:65,918,909
INFO 2026-06-08 09:42:06 MarkDuplicates Tracking 434365 as yet unmatched pairs. 23566 records in RAM.
INFO 2026-06-08 09:42:08 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:66,640,090
INFO 2026-06-08 09:42:08 MarkDuplicates Tracking 433573 as yet unmatched pairs. 22773 records in RAM.
INFO 2026-06-08 09:42:10 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr11:67,584,733
INFO 2026-06-08 09:42:10 MarkDuplicates Tracking 432719 as yet unmatched pairs. 21919 records in RAM.
INFO 2026-06-08 09:42:13 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr11:69,078,761
INFO 2026-06-08 09:42:13 MarkDuplicates Tracking 429701 as yet unmatched pairs. 18900 records in RAM.
INFO 2026-06-08 09:42:15 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 2s. Last read position: chr11:72,009,014
INFO 2026-06-08 09:42:15 MarkDuplicates Tracking 428486 as yet unmatched pairs. 17685 records in RAM.
INFO 2026-06-08 09:42:17 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr11:73,310,261
INFO 2026-06-08 09:42:17 MarkDuplicates Tracking 427034 as yet unmatched pairs. 16233 records in RAM.
INFO 2026-06-08 09:42:19 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 2s. Last read position: chr11:75,404,698
INFO 2026-06-08 09:42:19 MarkDuplicates Tracking 426082 as yet unmatched pairs. 15281 records in RAM.
INFO 2026-06-08 09:42:22 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr11:85,663,871
INFO 2026-06-08 09:42:22 MarkDuplicates Tracking 423501 as yet unmatched pairs. 12700 records in RAM.
INFO 2026-06-08 09:42:24 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr11:101,042,077
INFO 2026-06-08 09:42:24 MarkDuplicates Tracking 422559 as yet unmatched pairs. 11755 records in RAM.
INFO 2026-06-08 09:42:26 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr11:102,186,115
INFO 2026-06-08 09:42:26 MarkDuplicates Tracking 421461 as yet unmatched pairs. 10657 records in RAM.
INFO 2026-06-08 09:42:28 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 2s. Last read position: chr11:110,264,021
INFO 2026-06-08 09:42:28 MarkDuplicates Tracking 418762 as yet unmatched pairs. 7958 records in RAM.
INFO 2026-06-08 09:42:30 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr11:117,203,330
INFO 2026-06-08 09:42:30 MarkDuplicates Tracking 422126 as yet unmatched pairs. 11322 records in RAM.
INFO 2026-06-08 09:42:32 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr11:118,583,911
INFO 2026-06-08 09:42:32 MarkDuplicates Tracking 415878 as yet unmatched pairs. 5074 records in RAM.
INFO 2026-06-08 09:42:34 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 2s. Last read position: chr11:119,311,323
INFO 2026-06-08 09:42:34 MarkDuplicates Tracking 414432 as yet unmatched pairs. 3628 records in RAM.
INFO 2026-06-08 09:42:36 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr11:124,117,501
INFO 2026-06-08 09:42:36 MarkDuplicates Tracking 412800 as yet unmatched pairs. 1996 records in RAM.
INFO 2026-06-08 09:42:39 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr11:130,188,916
INFO 2026-06-08 09:42:39 MarkDuplicates Tracking 411537 as yet unmatched pairs. 732 records in RAM.
INFO 2026-06-08 09:42:41 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 2s. Last read position: chr12:2,115,471
INFO 2026-06-08 09:42:41 MarkDuplicates Tracking 410499 as yet unmatched pairs. 46080 records in RAM.
INFO 2026-06-08 09:42:43 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr12:6,374,366
INFO 2026-06-08 09:42:43 MarkDuplicates Tracking 408484 as yet unmatched pairs. 44056 records in RAM.
INFO 2026-06-08 09:42:45 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr12:6,823,963
INFO 2026-06-08 09:42:45 MarkDuplicates Tracking 406925 as yet unmatched pairs. 42497 records in RAM.
INFO 2026-06-08 09:42:48 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr12:7,096,777
INFO 2026-06-08 09:42:48 MarkDuplicates Tracking 405647 as yet unmatched pairs. 41219 records in RAM.
INFO 2026-06-08 09:42:50 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:9,106,240
INFO 2026-06-08 09:42:50 MarkDuplicates Tracking 404594 as yet unmatched pairs. 40166 records in RAM.
INFO 2026-06-08 09:42:52 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr12:14,793,781
INFO 2026-06-08 09:42:52 MarkDuplicates Tracking 402872 as yet unmatched pairs. 38444 records in RAM.
INFO 2026-06-08 09:42:54 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr12:26,656,508
INFO 2026-06-08 09:42:54 MarkDuplicates Tracking 401562 as yet unmatched pairs. 37134 records in RAM.
INFO 2026-06-08 09:42:56 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:42,398,896
INFO 2026-06-08 09:42:56 MarkDuplicates Tracking 400222 as yet unmatched pairs. 35794 records in RAM.
INFO 2026-06-08 09:42:58 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 2s. Last read position: chr12:48,774,046
INFO 2026-06-08 09:42:58 MarkDuplicates Tracking 398999 as yet unmatched pairs. 34571 records in RAM.
INFO 2026-06-08 09:43:00 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,304
INFO 2026-06-08 09:43:00 MarkDuplicates Tracking 400034 as yet unmatched pairs. 35606 records in RAM.
INFO 2026-06-08 09:43:02 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr12:49,803,910
INFO 2026-06-08 09:43:02 MarkDuplicates Tracking 396067 as yet unmatched pairs. 31639 records in RAM.
INFO 2026-06-08 09:43:04 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr12:52,952,722
INFO 2026-06-08 09:43:04 MarkDuplicates Tracking 394672 as yet unmatched pairs. 30243 records in RAM.
INFO 2026-06-08 09:43:06 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr12:53,459,295
INFO 2026-06-08 09:43:06 MarkDuplicates Tracking 394442 as yet unmatched pairs. 30012 records in RAM.
INFO 2026-06-08 09:43:09 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr12:54,283,895
INFO 2026-06-08 09:43:09 MarkDuplicates Tracking 393090 as yet unmatched pairs. 28660 records in RAM.
INFO 2026-06-08 09:43:11 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr12:56,133,628
INFO 2026-06-08 09:43:11 MarkDuplicates Tracking 391053 as yet unmatched pairs. 26623 records in RAM.
INFO 2026-06-08 09:43:13 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr12:56,581,450
INFO 2026-06-08 09:43:13 MarkDuplicates Tracking 388953 as yet unmatched pairs. 24522 records in RAM.
INFO 2026-06-08 09:43:16 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr12:57,098,556
INFO 2026-06-08 09:43:16 MarkDuplicates Tracking 388926 as yet unmatched pairs. 24495 records in RAM.
INFO 2026-06-08 09:43:18 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 2s. Last read position: chr12:57,183,805
INFO 2026-06-08 09:43:18 MarkDuplicates Tracking 386677 as yet unmatched pairs. 22246 records in RAM.
INFO 2026-06-08 09:43:20 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr12:57,515,180
INFO 2026-06-08 09:43:20 MarkDuplicates Tracking 384834 as yet unmatched pairs. 20403 records in RAM.
INFO 2026-06-08 09:43:22 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 2s. Last read position: chr12:63,150,108
INFO 2026-06-08 09:43:22 MarkDuplicates Tracking 383178 as yet unmatched pairs. 18745 records in RAM.
INFO 2026-06-08 09:43:24 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr12:69,598,346
INFO 2026-06-08 09:43:24 MarkDuplicates Tracking 381913 as yet unmatched pairs. 17479 records in RAM.
INFO 2026-06-08 09:43:26 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr12:89,349,295
INFO 2026-06-08 09:43:26 MarkDuplicates Tracking 380562 as yet unmatched pairs. 16128 records in RAM.
INFO 2026-06-08 09:43:29 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr12:95,300,453
INFO 2026-06-08 09:43:29 MarkDuplicates Tracking 379203 as yet unmatched pairs. 14768 records in RAM.
INFO 2026-06-08 09:43:31 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr12:103,934,174
INFO 2026-06-08 09:43:31 MarkDuplicates Tracking 378793 as yet unmatched pairs. 14356 records in RAM.
INFO 2026-06-08 09:43:33 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr12:108,647,497
INFO 2026-06-08 09:43:33 MarkDuplicates Tracking 376609 as yet unmatched pairs. 12172 records in RAM.
INFO 2026-06-08 09:43:35 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr12:111,456,191
INFO 2026-06-08 09:43:35 MarkDuplicates Tracking 374889 as yet unmatched pairs. 10451 records in RAM.
INFO 2026-06-08 09:43:37 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr12:113,191,408
INFO 2026-06-08 09:43:37 MarkDuplicates Tracking 373436 as yet unmatched pairs. 8998 records in RAM.
INFO 2026-06-08 09:43:39 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr12:120,138,023
INFO 2026-06-08 09:43:39 MarkDuplicates Tracking 371792 as yet unmatched pairs. 7354 records in RAM.
INFO 2026-06-08 09:43:42 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr12:121,330,583
INFO 2026-06-08 09:43:42 MarkDuplicates Tracking 370819 as yet unmatched pairs. 6381 records in RAM.
INFO 2026-06-08 09:43:45 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 3s. Last read position: chr12:122,988,723
INFO 2026-06-08 09:43:45 MarkDuplicates Tracking 368597 as yet unmatched pairs. 4159 records in RAM.
INFO 2026-06-08 09:43:47 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr12:124,402,513
INFO 2026-06-08 09:43:47 MarkDuplicates Tracking 367184 as yet unmatched pairs. 2744 records in RAM.
INFO 2026-06-08 09:43:49 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr12:132,143,817
INFO 2026-06-08 09:43:49 MarkDuplicates Tracking 365629 as yet unmatched pairs. 1188 records in RAM.
INFO 2026-06-08 09:43:51 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr13:20,061,197
INFO 2026-06-08 09:43:51 MarkDuplicates Tracking 364564 as yet unmatched pairs. 13850 records in RAM.
INFO 2026-06-08 09:43:53 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr13:24,490,690
INFO 2026-06-08 09:43:53 MarkDuplicates Tracking 362895 as yet unmatched pairs. 12180 records in RAM.
INFO 2026-06-08 09:43:55 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr13:33,362,937
INFO 2026-06-08 09:43:55 MarkDuplicates Tracking 361453 as yet unmatched pairs. 10738 records in RAM.
INFO 2026-06-08 09:43:57 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr13:42,302,781
INFO 2026-06-08 09:43:57 MarkDuplicates Tracking 360066 as yet unmatched pairs. 9351 records in RAM.
INFO 2026-06-08 09:43:59 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 2s. Last read position: chr13:48,253,872
INFO 2026-06-08 09:43:59 MarkDuplicates Tracking 364247 as yet unmatched pairs. 13532 records in RAM.
INFO 2026-06-08 09:44:01 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr13:75,481,339
INFO 2026-06-08 09:44:01 MarkDuplicates Tracking 357196 as yet unmatched pairs. 6478 records in RAM.
INFO 2026-06-08 09:44:03 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr13:98,446,149
INFO 2026-06-08 09:44:03 MarkDuplicates Tracking 355823 as yet unmatched pairs. 5105 records in RAM.
INFO 2026-06-08 09:44:05 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr13:110,205,510
INFO 2026-06-08 09:44:05 MarkDuplicates Tracking 354051 as yet unmatched pairs. 3332 records in RAM.
INFO 2026-06-08 09:44:07 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr13:110,879,967
INFO 2026-06-08 09:44:07 MarkDuplicates Tracking 352404 as yet unmatched pairs. 1684 records in RAM.
INFO 2026-06-08 09:44:10 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr14:20,405,478
INFO 2026-06-08 09:44:10 MarkDuplicates Tracking 350640 as yet unmatched pairs. 28032 records in RAM.
INFO 2026-06-08 09:44:12 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr14:21,495,261
INFO 2026-06-08 09:44:12 MarkDuplicates Tracking 349223 as yet unmatched pairs. 26615 records in RAM.
INFO 2026-06-08 09:44:14 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr14:23,129,745
INFO 2026-06-08 09:44:14 MarkDuplicates Tracking 347437 as yet unmatched pairs. 24829 records in RAM.
INFO 2026-06-08 09:44:16 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr14:24,190,531
INFO 2026-06-08 09:44:16 MarkDuplicates Tracking 346499 as yet unmatched pairs. 23891 records in RAM.
INFO 2026-06-08 09:44:18 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr14:31,178,211
INFO 2026-06-08 09:44:18 MarkDuplicates Tracking 344748 as yet unmatched pairs. 22140 records in RAM.
INFO 2026-06-08 09:44:20 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr14:39,348,774
INFO 2026-06-08 09:44:20 MarkDuplicates Tracking 343124 as yet unmatched pairs. 20513 records in RAM.
INFO 2026-06-08 09:44:22 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr14:52,235,629
INFO 2026-06-08 09:44:22 MarkDuplicates Tracking 341405 as yet unmatched pairs. 18789 records in RAM.
INFO 2026-06-08 09:44:24 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr14:60,144,998
INFO 2026-06-08 09:44:24 MarkDuplicates Tracking 340160 as yet unmatched pairs. 17543 records in RAM.
INFO 2026-06-08 09:44:26 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr14:64,541,535
INFO 2026-06-08 09:44:26 MarkDuplicates Tracking 338820 as yet unmatched pairs. 16195 records in RAM.
INFO 2026-06-08 09:44:28 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr14:68,882,929
INFO 2026-06-08 09:44:28 MarkDuplicates Tracking 338264 as yet unmatched pairs. 15639 records in RAM.
INFO 2026-06-08 09:44:30 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr14:73,076,318
INFO 2026-06-08 09:44:30 MarkDuplicates Tracking 336188 as yet unmatched pairs. 13550 records in RAM.
INFO 2026-06-08 09:44:32 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr14:74,810,271
INFO 2026-06-08 09:44:32 MarkDuplicates Tracking 334369 as yet unmatched pairs. 11731 records in RAM.
INFO 2026-06-08 09:44:34 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr14:81,185,542
INFO 2026-06-08 09:44:34 MarkDuplicates Tracking 332720 as yet unmatched pairs. 10082 records in RAM.
INFO 2026-06-08 09:44:36 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr14:92,154,430
INFO 2026-06-08 09:44:36 MarkDuplicates Tracking 331208 as yet unmatched pairs. 8570 records in RAM.
INFO 2026-06-08 09:44:38 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr14:95,093,964
INFO 2026-06-08 09:44:38 MarkDuplicates Tracking 329823 as yet unmatched pairs. 7185 records in RAM.
INFO 2026-06-08 09:44:40 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 2s. Last read position: chr14:101,997,259
INFO 2026-06-08 09:44:40 MarkDuplicates Tracking 328344 as yet unmatched pairs. 5697 records in RAM.
INFO 2026-06-08 09:44:42 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr14:102,971,994
INFO 2026-06-08 09:44:42 MarkDuplicates Tracking 326770 as yet unmatched pairs. 4123 records in RAM.
INFO 2026-06-08 09:44:44 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr14:104,792,597
INFO 2026-06-08 09:44:44 MarkDuplicates Tracking 325256 as yet unmatched pairs. 2609 records in RAM.
INFO 2026-06-08 09:44:46 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr14:105,460,354
INFO 2026-06-08 09:44:46 MarkDuplicates Tracking 323547 as yet unmatched pairs. 900 records in RAM.
INFO 2026-06-08 09:44:48 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr15:23,645,318
INFO 2026-06-08 09:44:48 MarkDuplicates Tracking 322219 as yet unmatched pairs. 27859 records in RAM.
INFO 2026-06-08 09:44:50 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr15:30,442,628
INFO 2026-06-08 09:44:50 MarkDuplicates Tracking 320811 as yet unmatched pairs. 26449 records in RAM.
INFO 2026-06-08 09:44:52 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr15:38,351,259
INFO 2026-06-08 09:44:52 MarkDuplicates Tracking 319520 as yet unmatched pairs. 25154 records in RAM.
INFO 2026-06-08 09:44:54 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 2s. Last read position: chr15:41,417,271
INFO 2026-06-08 09:44:54 MarkDuplicates Tracking 318100 as yet unmatched pairs. 23734 records in RAM.
INFO 2026-06-08 09:44:56 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr15:42,735,960
INFO 2026-06-08 09:44:56 MarkDuplicates Tracking 316573 as yet unmatched pairs. 22207 records in RAM.
INFO 2026-06-08 09:44:58 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,783
INFO 2026-06-08 09:44:58 MarkDuplicates Tracking 316839 as yet unmatched pairs. 22472 records in RAM.
INFO 2026-06-08 09:45:00 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr15:49,319,658
INFO 2026-06-08 09:45:00 MarkDuplicates Tracking 313566 as yet unmatched pairs. 19198 records in RAM.
INFO 2026-06-08 09:45:03 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr15:57,231,216
INFO 2026-06-08 09:45:03 MarkDuplicates Tracking 313898 as yet unmatched pairs. 19530 records in RAM.
INFO 2026-06-08 09:45:05 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr15:60,393,080
INFO 2026-06-08 09:45:05 MarkDuplicates Tracking 310816 as yet unmatched pairs. 16448 records in RAM.
INFO 2026-06-08 09:45:07 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 2s. Last read position: chr15:63,663,191
INFO 2026-06-08 09:45:07 MarkDuplicates Tracking 309216 as yet unmatched pairs. 14848 records in RAM.
INFO 2026-06-08 09:45:09 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr15:65,701,785
INFO 2026-06-08 09:45:09 MarkDuplicates Tracking 307583 as yet unmatched pairs. 13215 records in RAM.
INFO 2026-06-08 09:45:11 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr15:70,679,634
INFO 2026-06-08 09:45:11 MarkDuplicates Tracking 306291 as yet unmatched pairs. 11919 records in RAM.
INFO 2026-06-08 09:45:13 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 2s. Last read position: chr15:73,702,493
INFO 2026-06-08 09:45:13 MarkDuplicates Tracking 304893 as yet unmatched pairs. 10521 records in RAM.
INFO 2026-06-08 09:45:15 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr15:75,206,922
INFO 2026-06-08 09:45:15 MarkDuplicates Tracking 303237 as yet unmatched pairs. 8865 records in RAM.
INFO 2026-06-08 09:45:17 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 2s. Last read position: chr15:78,012,937
INFO 2026-06-08 09:45:17 MarkDuplicates Tracking 301856 as yet unmatched pairs. 7484 records in RAM.
INFO 2026-06-08 09:45:19 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 2s. Last read position: chr15:82,536,792
INFO 2026-06-08 09:45:19 MarkDuplicates Tracking 301717 as yet unmatched pairs. 7345 records in RAM.
INFO 2026-06-08 09:45:21 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr15:85,744,668
INFO 2026-06-08 09:45:21 MarkDuplicates Tracking 298647 as yet unmatched pairs. 4275 records in RAM.
INFO 2026-06-08 09:45:23 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 2s. Last read position: chr15:90,456,299
INFO 2026-06-08 09:45:23 MarkDuplicates Tracking 297601 as yet unmatched pairs. 3224 records in RAM.
INFO 2026-06-08 09:45:25 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr15:96,337,419
INFO 2026-06-08 09:45:25 MarkDuplicates Tracking 295926 as yet unmatched pairs. 1545 records in RAM.
INFO 2026-06-08 09:45:27 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr16:376,144
INFO 2026-06-08 09:45:27 MarkDuplicates Tracking 294036 as yet unmatched pairs. 47527 records in RAM.
INFO 2026-06-08 09:45:30 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr16:1,205,122
INFO 2026-06-08 09:45:30 MarkDuplicates Tracking 291926 as yet unmatched pairs. 45417 records in RAM.
INFO 2026-06-08 09:45:32 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr16:1,938,969
INFO 2026-06-08 09:45:32 MarkDuplicates Tracking 290038 as yet unmatched pairs. 43529 records in RAM.
INFO 2026-06-08 09:45:34 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 2s. Last read position: chr16:2,111,255
INFO 2026-06-08 09:45:34 MarkDuplicates Tracking 289492 as yet unmatched pairs. 42982 records in RAM.
INFO 2026-06-08 09:45:36 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,301
INFO 2026-06-08 09:45:36 MarkDuplicates Tracking 286814 as yet unmatched pairs. 40304 records in RAM.
INFO 2026-06-08 09:45:38 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chr16:3,065,800
INFO 2026-06-08 09:45:38 MarkDuplicates Tracking 286897 as yet unmatched pairs. 40383 records in RAM.
INFO 2026-06-08 09:45:40 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:4,609,743
INFO 2026-06-08 09:45:40 MarkDuplicates Tracking 283692 as yet unmatched pairs. 37178 records in RAM.
INFO 2026-06-08 09:45:42 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 2s. Last read position: chr16:11,734,044
INFO 2026-06-08 09:45:42 MarkDuplicates Tracking 281825 as yet unmatched pairs. 35311 records in RAM.
INFO 2026-06-08 09:45:44 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr16:14,925,674
INFO 2026-06-08 09:45:44 MarkDuplicates Tracking 280807 as yet unmatched pairs. 34291 records in RAM.
INFO 2026-06-08 09:45:45 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr16:15,715,013
INFO 2026-06-08 09:45:45 MarkDuplicates Tracking 282724 as yet unmatched pairs. 36208 records in RAM.
INFO 2026-06-08 09:45:48 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 2s. Last read position: chr16:15,740,098
INFO 2026-06-08 09:45:48 MarkDuplicates Tracking 279379 as yet unmatched pairs. 32863 records in RAM.
INFO 2026-06-08 09:45:49 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr16:15,782,424
INFO 2026-06-08 09:45:49 MarkDuplicates Tracking 280970 as yet unmatched pairs. 34454 records in RAM.
INFO 2026-06-08 09:45:51 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr16:16,325,172
INFO 2026-06-08 09:45:51 MarkDuplicates Tracking 276367 as yet unmatched pairs. 29850 records in RAM.
INFO 2026-06-08 09:45:53 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr16:18,350,670
INFO 2026-06-08 09:45:53 MarkDuplicates Tracking 276932 as yet unmatched pairs. 30415 records in RAM.
INFO 2026-06-08 09:45:55 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr16:18,834,918
INFO 2026-06-08 09:45:55 MarkDuplicates Tracking 275148 as yet unmatched pairs. 28631 records in RAM.
INFO 2026-06-08 09:45:56 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr16:21,452,928
INFO 2026-06-08 09:45:56 MarkDuplicates Tracking 274537 as yet unmatched pairs. 28020 records in RAM.
INFO 2026-06-08 09:45:58 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr16:22,475,097
INFO 2026-06-08 09:45:58 MarkDuplicates Tracking 273456 as yet unmatched pairs. 26939 records in RAM.
INFO 2026-06-08 09:46:00 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr16:24,935,598
INFO 2026-06-08 09:46:00 MarkDuplicates Tracking 272302 as yet unmatched pairs. 25785 records in RAM.
INFO 2026-06-08 09:46:02 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 2s. Last read position: chr16:28,825,771
INFO 2026-06-08 09:46:02 MarkDuplicates Tracking 271298 as yet unmatched pairs. 24781 records in RAM.
INFO 2026-06-08 09:46:03 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr16:29,500,219
INFO 2026-06-08 09:46:03 MarkDuplicates Tracking 270275 as yet unmatched pairs. 23758 records in RAM.
INFO 2026-06-08 09:46:06 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 2s. Last read position: chr16:30,069,886
INFO 2026-06-08 09:46:06 MarkDuplicates Tracking 269588 as yet unmatched pairs. 23070 records in RAM.
INFO 2026-06-08 09:46:07 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr16:30,654,290
INFO 2026-06-08 09:46:07 MarkDuplicates Tracking 267103 as yet unmatched pairs. 20584 records in RAM.
INFO 2026-06-08 09:46:09 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 2s. Last read position: chr16:31,094,554
INFO 2026-06-08 09:46:09 MarkDuplicates Tracking 266202 as yet unmatched pairs. 19680 records in RAM.
INFO 2026-06-08 09:46:11 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr16:31,499,496
INFO 2026-06-08 09:46:11 MarkDuplicates Tracking 264231 as yet unmatched pairs. 17709 records in RAM.
INFO 2026-06-08 09:46:13 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 2s. Last read position: chr16:51,646,689
INFO 2026-06-08 09:46:13 MarkDuplicates Tracking 262718 as yet unmatched pairs. 16195 records in RAM.
INFO 2026-06-08 09:46:15 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr16:57,020,936
INFO 2026-06-08 09:46:15 MarkDuplicates Tracking 261429 as yet unmatched pairs. 14906 records in RAM.
INFO 2026-06-08 09:46:17 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 2s. Last read position: chr16:64,947,951
INFO 2026-06-08 09:46:17 MarkDuplicates Tracking 260249 as yet unmatched pairs. 13726 records in RAM.
INFO 2026-06-08 09:46:20 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr16:67,620,697
INFO 2026-06-08 09:46:20 MarkDuplicates Tracking 258133 as yet unmatched pairs. 11610 records in RAM.
INFO 2026-06-08 09:46:21 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr16:69,120,559
INFO 2026-06-08 09:46:21 MarkDuplicates Tracking 256668 as yet unmatched pairs. 10145 records in RAM.
INFO 2026-06-08 09:46:24 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 2s. Last read position: chr16:70,571,688
INFO 2026-06-08 09:46:24 MarkDuplicates Tracking 254953 as yet unmatched pairs. 8429 records in RAM.
INFO 2026-06-08 09:46:25 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr16:74,337,491
INFO 2026-06-08 09:46:25 MarkDuplicates Tracking 253351 as yet unmatched pairs. 6827 records in RAM.
INFO 2026-06-08 09:46:28 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 2s. Last read position: chr16:81,061,554
INFO 2026-06-08 09:46:28 MarkDuplicates Tracking 251491 as yet unmatched pairs. 4967 records in RAM.
INFO 2026-06-08 09:46:30 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 2s. Last read position: chr16:87,383,598
INFO 2026-06-08 09:46:30 MarkDuplicates Tracking 249992 as yet unmatched pairs. 3467 records in RAM.
INFO 2026-06-08 09:46:32 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr16:89,281,742
INFO 2026-06-08 09:46:32 MarkDuplicates Tracking 248358 as yet unmatched pairs. 1832 records in RAM.
INFO 2026-06-08 09:46:34 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 2s. Last read position: chr17:519,146
INFO 2026-06-08 09:46:34 MarkDuplicates Tracking 246531 as yet unmatched pairs. 64480 records in RAM.
INFO 2026-06-08 09:46:36 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr17:1,653,808
INFO 2026-06-08 09:46:36 MarkDuplicates Tracking 245227 as yet unmatched pairs. 63175 records in RAM.
INFO 2026-06-08 09:46:39 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 2s. Last read position: chr17:2,419,858
INFO 2026-06-08 09:46:39 MarkDuplicates Tracking 243191 as yet unmatched pairs. 61139 records in RAM.
INFO 2026-06-08 09:46:41 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 2s. Last read position: chr17:4,895,756
INFO 2026-06-08 09:46:41 MarkDuplicates Tracking 241894 as yet unmatched pairs. 59842 records in RAM.
INFO 2026-06-08 09:46:43 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr17:7,220,617
INFO 2026-06-08 09:46:43 MarkDuplicates Tracking 240643 as yet unmatched pairs. 58591 records in RAM.
INFO 2026-06-08 09:46:45 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 2s. Last read position: chr17:7,466,196
INFO 2026-06-08 09:46:45 MarkDuplicates Tracking 238619 as yet unmatched pairs. 56566 records in RAM.
INFO 2026-06-08 09:46:47 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr17:7,849,063
INFO 2026-06-08 09:46:47 MarkDuplicates Tracking 237148 as yet unmatched pairs. 55095 records in RAM.
INFO 2026-06-08 09:46:49 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 2s. Last read position: chr17:8,480,492
INFO 2026-06-08 09:46:49 MarkDuplicates Tracking 235330 as yet unmatched pairs. 53277 records in RAM.
INFO 2026-06-08 09:46:51 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 2s. Last read position: chr17:16,065,612
INFO 2026-06-08 09:46:51 MarkDuplicates Tracking 233980 as yet unmatched pairs. 51927 records in RAM.
INFO 2026-06-08 09:46:53 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr17:17,794,312
INFO 2026-06-08 09:46:53 MarkDuplicates Tracking 232620 as yet unmatched pairs. 50567 records in RAM.
INFO 2026-06-08 09:46:55 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 2s. Last read position: chr17:19,283,260
INFO 2026-06-08 09:46:55 MarkDuplicates Tracking 231123 as yet unmatched pairs. 49070 records in RAM.
INFO 2026-06-08 09:46:57 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr17:27,643,552
INFO 2026-06-08 09:46:57 MarkDuplicates Tracking 230046 as yet unmatched pairs. 47993 records in RAM.
INFO 2026-06-08 09:46:59 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 2s. Last read position: chr17:28,888,944
INFO 2026-06-08 09:46:59 MarkDuplicates Tracking 228257 as yet unmatched pairs. 46203 records in RAM.
INFO 2026-06-08 09:47:01 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 2s. Last read position: chr17:31,863,344
INFO 2026-06-08 09:47:01 MarkDuplicates Tracking 226456 as yet unmatched pairs. 44393 records in RAM.
INFO 2026-06-08 09:47:03 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 1s. Last read position: chr17:36,001,431
INFO 2026-06-08 09:47:03 MarkDuplicates Tracking 224970 as yet unmatched pairs. 42907 records in RAM.
INFO 2026-06-08 09:47:05 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr17:38,724,944
INFO 2026-06-08 09:47:05 MarkDuplicates Tracking 223910 as yet unmatched pairs. 41847 records in RAM.
INFO 2026-06-08 09:47:07 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,090
INFO 2026-06-08 09:47:07 MarkDuplicates Tracking 224562 as yet unmatched pairs. 42499 records in RAM.
INFO 2026-06-08 09:49:19 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 131s. Last read position: chr17:40,349,884
INFO 2026-06-08 09:49:19 MarkDuplicates Tracking 221091 as yet unmatched pairs. 39028 records in RAM.
INFO 2026-06-08 09:49:21 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 2s. Last read position: chr17:41,904,778
INFO 2026-06-08 09:49:21 MarkDuplicates Tracking 219180 as yet unmatched pairs. 37117 records in RAM.
INFO 2026-06-08 09:49:23 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr17:42,585,240
INFO 2026-06-08 09:49:23 MarkDuplicates Tracking 217565 as yet unmatched pairs. 35502 records in RAM.
INFO 2026-06-08 09:49:25 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr17:44,075,950
INFO 2026-06-08 09:49:25 MarkDuplicates Tracking 215766 as yet unmatched pairs. 33703 records in RAM.
INFO 2026-06-08 09:49:27 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr17:45,286,871
INFO 2026-06-08 09:49:27 MarkDuplicates Tracking 213914 as yet unmatched pairs. 31851 records in RAM.
INFO 2026-06-08 09:49:29 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr17:47,677,035
INFO 2026-06-08 09:49:29 MarkDuplicates Tracking 213533 as yet unmatched pairs. 31470 records in RAM.
INFO 2026-06-08 09:49:31 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 2s. Last read position: chr17:49,798,457
INFO 2026-06-08 09:49:31 MarkDuplicates Tracking 211583 as yet unmatched pairs. 29520 records in RAM.
INFO 2026-06-08 09:49:33 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,102
INFO 2026-06-08 09:49:33 MarkDuplicates Tracking 225308 as yet unmatched pairs. 43245 records in RAM.
INFO 2026-06-08 09:49:35 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,564
INFO 2026-06-08 09:49:35 MarkDuplicates Tracking 213897 as yet unmatched pairs. 31834 records in RAM.
INFO 2026-06-08 09:49:37 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,386
INFO 2026-06-08 09:49:37 MarkDuplicates Tracking 220086 as yet unmatched pairs. 38023 records in RAM.
INFO 2026-06-08 09:49:39 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,009
INFO 2026-06-08 09:49:39 MarkDuplicates Tracking 215254 as yet unmatched pairs. 33191 records in RAM.
INFO 2026-06-08 09:49:42 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 2s. Last read position: chr17:50,667,963
INFO 2026-06-08 09:49:42 MarkDuplicates Tracking 203047 as yet unmatched pairs. 20984 records in RAM.
INFO 2026-06-08 09:49:44 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr17:58,312,086
INFO 2026-06-08 09:49:44 MarkDuplicates Tracking 202014 as yet unmatched pairs. 19950 records in RAM.
INFO 2026-06-08 09:49:46 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,746
INFO 2026-06-08 09:49:46 MarkDuplicates Tracking 201263 as yet unmatched pairs. 19199 records in RAM.
INFO 2026-06-08 09:49:48 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 2s. Last read position: chr17:63,699,267
INFO 2026-06-08 09:49:48 MarkDuplicates Tracking 198706 as yet unmatched pairs. 16642 records in RAM.
INFO 2026-06-08 09:49:50 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr17:66,385,001
INFO 2026-06-08 09:49:50 MarkDuplicates Tracking 196990 as yet unmatched pairs. 14924 records in RAM.
INFO 2026-06-08 09:49:52 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr17:68,600,345
INFO 2026-06-08 09:49:52 MarkDuplicates Tracking 195908 as yet unmatched pairs. 13842 records in RAM.
INFO 2026-06-08 09:49:54 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr17:75,130,791
INFO 2026-06-08 09:49:54 MarkDuplicates Tracking 194471 as yet unmatched pairs. 12405 records in RAM.
INFO 2026-06-08 09:49:56 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chr17:75,731,246
INFO 2026-06-08 09:49:56 MarkDuplicates Tracking 192438 as yet unmatched pairs. 10367 records in RAM.
INFO 2026-06-08 09:49:58 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 2s. Last read position: chr17:76,399,473
INFO 2026-06-08 09:49:58 MarkDuplicates Tracking 190725 as yet unmatched pairs. 8654 records in RAM.
INFO 2026-06-08 09:50:00 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr17:78,827,198
INFO 2026-06-08 09:50:00 MarkDuplicates Tracking 189333 as yet unmatched pairs. 7262 records in RAM.
INFO 2026-06-08 09:50:02 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chr17:80,332,072
INFO 2026-06-08 09:50:02 MarkDuplicates Tracking 187692 as yet unmatched pairs. 5621 records in RAM.
INFO 2026-06-08 09:50:04 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr17:81,541,356
INFO 2026-06-08 09:50:04 MarkDuplicates Tracking 186143 as yet unmatched pairs. 4071 records in RAM.
INFO 2026-06-08 09:50:06 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr17:82,019,314
INFO 2026-06-08 09:50:06 MarkDuplicates Tracking 184227 as yet unmatched pairs. 2155 records in RAM.
INFO 2026-06-08 09:50:08 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr17:83,085,267
INFO 2026-06-08 09:50:08 MarkDuplicates Tracking 182287 as yet unmatched pairs. 213 records in RAM.
INFO 2026-06-08 09:50:10 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr18:9,254,928
INFO 2026-06-08 09:50:10 MarkDuplicates Tracking 180653 as yet unmatched pairs. 9058 records in RAM.
INFO 2026-06-08 09:50:12 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr18:23,135,900
INFO 2026-06-08 09:50:12 MarkDuplicates Tracking 179254 as yet unmatched pairs. 7652 records in RAM.
INFO 2026-06-08 09:50:14 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr18:32,741,969
INFO 2026-06-08 09:50:14 MarkDuplicates Tracking 177836 as yet unmatched pairs. 6233 records in RAM.
INFO 2026-06-08 09:50:16 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 2s. Last read position: chr18:49,333,728
INFO 2026-06-08 09:50:16 MarkDuplicates Tracking 176731 as yet unmatched pairs. 5122 records in RAM.
INFO 2026-06-08 09:50:18 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr18:58,918,854
INFO 2026-06-08 09:50:18 MarkDuplicates Tracking 175276 as yet unmatched pairs. 3667 records in RAM.
INFO 2026-06-08 09:50:20 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 2s. Last read position: chr18:75,286,073
INFO 2026-06-08 09:50:20 MarkDuplicates Tracking 173497 as yet unmatched pairs. 1888 records in RAM.
INFO 2026-06-08 09:50:23 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 2s. Last read position: chr19:497,892
INFO 2026-06-08 09:50:23 MarkDuplicates Tracking 171320 as yet unmatched pairs. 74222 records in RAM.
INFO 2026-06-08 09:50:25 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:1,037,696
INFO 2026-06-08 09:50:25 MarkDuplicates Tracking 169857 as yet unmatched pairs. 72759 records in RAM.
INFO 2026-06-08 09:50:27 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr19:1,430,227
INFO 2026-06-08 09:50:27 MarkDuplicates Tracking 167675 as yet unmatched pairs. 70577 records in RAM.
INFO 2026-06-08 09:50:29 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:2,111,583
INFO 2026-06-08 09:50:29 MarkDuplicates Tracking 165642 as yet unmatched pairs. 68544 records in RAM.
INFO 2026-06-08 09:50:31 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr19:3,186,172
INFO 2026-06-08 09:50:31 MarkDuplicates Tracking 163942 as yet unmatched pairs. 66844 records in RAM.
INFO 2026-06-08 09:50:33 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 2s. Last read position: chr19:4,325,480
INFO 2026-06-08 09:50:33 MarkDuplicates Tracking 162172 as yet unmatched pairs. 65074 records in RAM.
INFO 2026-06-08 09:50:35 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:5,223,165
INFO 2026-06-08 09:50:35 MarkDuplicates Tracking 161507 as yet unmatched pairs. 64409 records in RAM.
INFO 2026-06-08 09:50:37 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 2s. Last read position: chr19:6,270,698
INFO 2026-06-08 09:50:37 MarkDuplicates Tracking 158282 as yet unmatched pairs. 61182 records in RAM.
INFO 2026-06-08 09:50:39 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr19:7,520,854
INFO 2026-06-08 09:50:39 MarkDuplicates Tracking 157423 as yet unmatched pairs. 60323 records in RAM.
INFO 2026-06-08 09:50:41 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 2s. Last read position: chr19:8,511,407
INFO 2026-06-08 09:50:41 MarkDuplicates Tracking 154650 as yet unmatched pairs. 57549 records in RAM.
INFO 2026-06-08 09:50:43 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 2s. Last read position: chr19:8,959,083
INFO 2026-06-08 09:50:43 MarkDuplicates Tracking 153627 as yet unmatched pairs. 56526 records in RAM.
INFO 2026-06-08 09:50:45 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr19:10,274,837
INFO 2026-06-08 09:50:45 MarkDuplicates Tracking 152188 as yet unmatched pairs. 55087 records in RAM.
INFO 2026-06-08 09:50:47 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 2s. Last read position: chr19:10,987,819
INFO 2026-06-08 09:50:47 MarkDuplicates Tracking 151124 as yet unmatched pairs. 54023 records in RAM.
INFO 2026-06-08 09:50:49 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr19:11,400,281
INFO 2026-06-08 09:50:49 MarkDuplicates Tracking 149148 as yet unmatched pairs. 52047 records in RAM.
INFO 2026-06-08 09:50:52 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chr19:12,694,620
INFO 2026-06-08 09:50:52 MarkDuplicates Tracking 147698 as yet unmatched pairs. 50597 records in RAM.
INFO 2026-06-08 09:50:54 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 2s. Last read position: chr19:13,149,512
INFO 2026-06-08 09:50:54 MarkDuplicates Tracking 146092 as yet unmatched pairs. 48991 records in RAM.
INFO 2026-06-08 09:50:56 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr19:14,443,592
INFO 2026-06-08 09:50:56 MarkDuplicates Tracking 144194 as yet unmatched pairs. 47093 records in RAM.
INFO 2026-06-08 09:50:58 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 2s. Last read position: chr19:15,189,409
INFO 2026-06-08 09:50:58 MarkDuplicates Tracking 142824 as yet unmatched pairs. 45723 records in RAM.
INFO 2026-06-08 09:51:00 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr19:16,324,900
INFO 2026-06-08 09:51:00 MarkDuplicates Tracking 141116 as yet unmatched pairs. 44014 records in RAM.
INFO 2026-06-08 09:51:02 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 2s. Last read position: chr19:17,568,551
INFO 2026-06-08 09:51:02 MarkDuplicates Tracking 138772 as yet unmatched pairs. 41670 records in RAM.
INFO 2026-06-08 09:51:04 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 2s. Last read position: chr19:18,437,902
INFO 2026-06-08 09:51:04 MarkDuplicates Tracking 136687 as yet unmatched pairs. 39584 records in RAM.
INFO 2026-06-08 09:51:06 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr19:19,498,620
INFO 2026-06-08 09:51:06 MarkDuplicates Tracking 135053 as yet unmatched pairs. 37950 records in RAM.
INFO 2026-06-08 09:51:08 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr19:33,387,889
INFO 2026-06-08 09:51:08 MarkDuplicates Tracking 133653 as yet unmatched pairs. 36550 records in RAM.
INFO 2026-06-08 09:51:10 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr19:35,654,576
INFO 2026-06-08 09:51:10 MarkDuplicates Tracking 132408 as yet unmatched pairs. 35305 records in RAM.
INFO 2026-06-08 09:51:12 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 2s. Last read position: chr19:38,081,874
INFO 2026-06-08 09:51:12 MarkDuplicates Tracking 129598 as yet unmatched pairs. 32495 records in RAM.
INFO 2026-06-08 09:51:14 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 2s. Last read position: chr19:38,838,983
INFO 2026-06-08 09:51:14 MarkDuplicates Tracking 128192 as yet unmatched pairs. 31089 records in RAM.
INFO 2026-06-08 09:51:16 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr19:39,830,673
INFO 2026-06-08 09:51:16 MarkDuplicates Tracking 126457 as yet unmatched pairs. 29354 records in RAM.
INFO 2026-06-08 09:51:18 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr19:40,204,447
INFO 2026-06-08 09:51:18 MarkDuplicates Tracking 124845 as yet unmatched pairs. 27742 records in RAM.
INFO 2026-06-08 09:51:20 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr19:40,612,137
INFO 2026-06-08 09:51:20 MarkDuplicates Tracking 124874 as yet unmatched pairs. 27771 records in RAM.
INFO 2026-06-08 09:51:22 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 2s. Last read position: chr19:41,332,205
INFO 2026-06-08 09:51:22 MarkDuplicates Tracking 121684 as yet unmatched pairs. 24581 records in RAM.
INFO 2026-06-08 09:51:24 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr19:42,287,694
INFO 2026-06-08 09:51:24 MarkDuplicates Tracking 120300 as yet unmatched pairs. 23197 records in RAM.
INFO 2026-06-08 09:51:26 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr19:43,623,342
INFO 2026-06-08 09:51:26 MarkDuplicates Tracking 117998 as yet unmatched pairs. 20894 records in RAM.
INFO 2026-06-08 09:51:28 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 2s. Last read position: chr19:45,385,653
INFO 2026-06-08 09:51:28 MarkDuplicates Tracking 115987 as yet unmatched pairs. 18883 records in RAM.
INFO 2026-06-08 09:51:30 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr19:46,412,459
INFO 2026-06-08 09:51:30 MarkDuplicates Tracking 114469 as yet unmatched pairs. 17365 records in RAM.
INFO 2026-06-08 09:51:32 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr19:47,701,338
INFO 2026-06-08 09:51:32 MarkDuplicates Tracking 112339 as yet unmatched pairs. 15235 records in RAM.
INFO 2026-06-08 09:51:34 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 2s. Last read position: chr19:48,729,465
INFO 2026-06-08 09:51:34 MarkDuplicates Tracking 110720 as yet unmatched pairs. 13616 records in RAM.
INFO 2026-06-08 09:51:36 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr19:49,489,911
INFO 2026-06-08 09:51:36 MarkDuplicates Tracking 114680 as yet unmatched pairs. 17576 records in RAM.
INFO 2026-06-08 09:51:38 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 2s. Last read position: chr19:49,662,490
INFO 2026-06-08 09:51:38 MarkDuplicates Tracking 108321 as yet unmatched pairs. 11217 records in RAM.
INFO 2026-06-08 09:51:40 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr19:50,334,876
INFO 2026-06-08 09:51:40 MarkDuplicates Tracking 105644 as yet unmatched pairs. 8540 records in RAM.
INFO 2026-06-08 09:51:42 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 2s. Last read position: chr19:53,086,022
INFO 2026-06-08 09:51:42 MarkDuplicates Tracking 103801 as yet unmatched pairs. 6697 records in RAM.
INFO 2026-06-08 09:51:44 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 2s. Last read position: chr19:54,462,895
INFO 2026-06-08 09:51:44 MarkDuplicates Tracking 102253 as yet unmatched pairs. 5147 records in RAM.
INFO 2026-06-08 09:51:46 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr19:55,644,819
INFO 2026-06-08 09:51:46 MarkDuplicates Tracking 100399 as yet unmatched pairs. 3293 records in RAM.
INFO 2026-06-08 09:51:48 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr19:57,909,819
INFO 2026-06-08 09:51:48 MarkDuplicates Tracking 98583 as yet unmatched pairs. 1477 records in RAM.
INFO 2026-06-08 09:51:50 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 2s. Last read position: chr20:326,766
INFO 2026-06-08 09:51:50 MarkDuplicates Tracking 97210 as yet unmatched pairs. 24037 records in RAM.
INFO 2026-06-08 09:51:52 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 2s. Last read position: chr20:3,213,904
INFO 2026-06-08 09:51:52 MarkDuplicates Tracking 95524 as yet unmatched pairs. 22350 records in RAM.
INFO 2026-06-08 09:51:54 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 2s. Last read position: chr20:8,733,369
INFO 2026-06-08 09:51:54 MarkDuplicates Tracking 93580 as yet unmatched pairs. 20406 records in RAM.
INFO 2026-06-08 09:51:56 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr20:18,532,730
INFO 2026-06-08 09:51:56 MarkDuplicates Tracking 92373 as yet unmatched pairs. 19197 records in RAM.
INFO 2026-06-08 09:51:58 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 2s. Last read position: chr20:31,544,962
INFO 2026-06-08 09:51:58 MarkDuplicates Tracking 91299 as yet unmatched pairs. 18123 records in RAM.
INFO 2026-06-08 09:52:00 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chr20:34,634,659
INFO 2026-06-08 09:52:00 MarkDuplicates Tracking 89224 as yet unmatched pairs. 16047 records in RAM.
INFO 2026-06-08 09:52:02 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 2s. Last read position: chr20:36,194,273
INFO 2026-06-08 09:52:02 MarkDuplicates Tracking 87700 as yet unmatched pairs. 14523 records in RAM.
INFO 2026-06-08 09:52:04 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 2s. Last read position: chr20:38,138,193
INFO 2026-06-08 09:52:04 MarkDuplicates Tracking 86937 as yet unmatched pairs. 13760 records in RAM.
INFO 2026-06-08 09:52:06 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chr20:43,536,222
INFO 2026-06-08 09:52:06 MarkDuplicates Tracking 84532 as yet unmatched pairs. 11355 records in RAM.
INFO 2026-06-08 09:52:08 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 2s. Last read position: chr20:45,470,407
INFO 2026-06-08 09:52:08 MarkDuplicates Tracking 98653 as yet unmatched pairs. 25476 records in RAM.
INFO 2026-06-08 09:52:10 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chr20:47,143,042
INFO 2026-06-08 09:52:10 MarkDuplicates Tracking 81793 as yet unmatched pairs. 8615 records in RAM.
INFO 2026-06-08 09:52:12 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 2s. Last read position: chr20:50,609,684
INFO 2026-06-08 09:52:12 MarkDuplicates Tracking 79873 as yet unmatched pairs. 6695 records in RAM.
INFO 2026-06-08 09:52:14 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chr20:58,891,804
INFO 2026-06-08 09:52:14 MarkDuplicates Tracking 82329 as yet unmatched pairs. 9151 records in RAM.
INFO 2026-06-08 09:52:16 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: chr20:62,313,237
INFO 2026-06-08 09:52:16 MarkDuplicates Tracking 76933 as yet unmatched pairs. 3755 records in RAM.
INFO 2026-06-08 09:52:18 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 2s. Last read position: chr20:62,905,496
INFO 2026-06-08 09:52:18 MarkDuplicates Tracking 74996 as yet unmatched pairs. 1818 records in RAM.
INFO 2026-06-08 09:52:20 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chr21:5,035,701
INFO 2026-06-08 09:52:20 MarkDuplicates Tracking 73493 as yet unmatched pairs. 13938 records in RAM.
INFO 2026-06-08 09:52:22 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,958
INFO 2026-06-08 09:52:22 MarkDuplicates Tracking 72832 as yet unmatched pairs. 13273 records in RAM.
INFO 2026-06-08 09:52:24 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chr21:25,897,635
INFO 2026-06-08 09:52:24 MarkDuplicates Tracking 72354 as yet unmatched pairs. 12791 records in RAM.
INFO 2026-06-08 09:52:26 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 2s. Last read position: chr21:32,352,710
INFO 2026-06-08 09:52:26 MarkDuplicates Tracking 69702 as yet unmatched pairs. 10139 records in RAM.
INFO 2026-06-08 09:52:28 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 1s. Last read position: chr21:36,070,336
INFO 2026-06-08 09:52:28 MarkDuplicates Tracking 68294 as yet unmatched pairs. 8731 records in RAM.
INFO 2026-06-08 09:52:30 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 2s. Last read position: chr21:41,953,593
INFO 2026-06-08 09:52:30 MarkDuplicates Tracking 66389 as yet unmatched pairs. 6826 records in RAM.
INFO 2026-06-08 09:52:32 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 1s. Last read position: chr21:45,171,648
INFO 2026-06-08 09:52:32 MarkDuplicates Tracking 64695 as yet unmatched pairs. 5132 records in RAM.
INFO 2026-06-08 09:52:34 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 2s. Last read position: chr21:45,990,387
INFO 2026-06-08 09:52:34 MarkDuplicates Tracking 62999 as yet unmatched pairs. 3436 records in RAM.
INFO 2026-06-08 09:52:36 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 2s. Last read position: chr21:46,120,559
INFO 2026-06-08 09:52:36 MarkDuplicates Tracking 62877 as yet unmatched pairs. 3314 records in RAM.
INFO 2026-06-08 09:52:38 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 2s. Last read position: chr22:17,727,131
INFO 2026-06-08 09:52:38 MarkDuplicates Tracking 59498 as yet unmatched pairs. 26533 records in RAM.
INFO 2026-06-08 09:52:40 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 2s. Last read position: chr22:20,429,283
INFO 2026-06-08 09:52:40 MarkDuplicates Tracking 57724 as yet unmatched pairs. 24759 records in RAM.
INFO 2026-06-08 09:52:42 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 1s. Last read position: chr22:23,181,753
INFO 2026-06-08 09:52:42 MarkDuplicates Tracking 56705 as yet unmatched pairs. 23740 records in RAM.
INFO 2026-06-08 09:52:45 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 2s. Last read position: chr22:23,884,697
INFO 2026-06-08 09:52:45 MarkDuplicates Tracking 54329 as yet unmatched pairs. 21364 records in RAM.
INFO 2026-06-08 09:52:46 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 1s. Last read position: chr22:28,107,856
INFO 2026-06-08 09:52:46 MarkDuplicates Tracking 52749 as yet unmatched pairs. 19784 records in RAM.
INFO 2026-06-08 09:52:48 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 2s. Last read position: chr22:29,311,690
INFO 2026-06-08 09:52:48 MarkDuplicates Tracking 51064 as yet unmatched pairs. 18099 records in RAM.
INFO 2026-06-08 09:52:51 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: chr22:31,104,315
INFO 2026-06-08 09:52:51 MarkDuplicates Tracking 50483 as yet unmatched pairs. 17518 records in RAM.
INFO 2026-06-08 09:52:52 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 1s. Last read position: chr22:36,141,337
INFO 2026-06-08 09:52:52 MarkDuplicates Tracking 48033 as yet unmatched pairs. 15068 records in RAM.
INFO 2026-06-08 09:52:55 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 2s. Last read position: chr22:36,511,663
INFO 2026-06-08 09:52:55 MarkDuplicates Tracking 46604 as yet unmatched pairs. 13639 records in RAM.
INFO 2026-06-08 09:52:57 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 2s. Last read position: chr22:37,912,362
INFO 2026-06-08 09:52:57 MarkDuplicates Tracking 45233 as yet unmatched pairs. 12268 records in RAM.
INFO 2026-06-08 09:52:59 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 1s. Last read position: chr22:38,866,949
INFO 2026-06-08 09:52:59 MarkDuplicates Tracking 43457 as yet unmatched pairs. 10492 records in RAM.
INFO 2026-06-08 09:53:01 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 2s. Last read position: chr22:41,092,953
INFO 2026-06-08 09:53:01 MarkDuplicates Tracking 41732 as yet unmatched pairs. 8767 records in RAM.
INFO 2026-06-08 09:53:03 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:22:57s. Time for last 1,000,000: 1s. Last read position: chr22:42,090,612
INFO 2026-06-08 09:53:03 MarkDuplicates Tracking 40029 as yet unmatched pairs. 7064 records in RAM.
INFO 2026-06-08 09:53:05 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 2s. Last read position: chr22:45,518,692
INFO 2026-06-08 09:53:05 MarkDuplicates Tracking 40704 as yet unmatched pairs. 7739 records in RAM.
INFO 2026-06-08 09:53:07 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 2s. Last read position: chr22:49,924,339
INFO 2026-06-08 09:53:07 MarkDuplicates Tracking 36424 as yet unmatched pairs. 3459 records in RAM.
INFO 2026-06-08 09:53:09 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 1s. Last read position: chr22:50,448,621
INFO 2026-06-08 09:53:09 MarkDuplicates Tracking 34949 as yet unmatched pairs. 1984 records in RAM.
INFO 2026-06-08 09:53:11 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 2s. Last read position: chrX:1,432,347
INFO 2026-06-08 09:53:11 MarkDuplicates Tracking 32797 as yet unmatched pairs. 27830 records in RAM.
INFO 2026-06-08 09:53:13 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 1s. Last read position: chrX:13,734,092
INFO 2026-06-08 09:53:13 MarkDuplicates Tracking 31034 as yet unmatched pairs. 26067 records in RAM.
INFO 2026-06-08 09:53:15 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 2s. Last read position: chrX:24,060,130
INFO 2026-06-08 09:53:15 MarkDuplicates Tracking 30648 as yet unmatched pairs. 25679 records in RAM.
INFO 2026-06-08 09:53:17 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 2s. Last read position: chrX:41,171,842
INFO 2026-06-08 09:53:17 MarkDuplicates Tracking 28512 as yet unmatched pairs. 23543 records in RAM.
INFO 2026-06-08 09:53:19 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 1s. Last read position: chrX:47,239,370
INFO 2026-06-08 09:53:19 MarkDuplicates Tracking 27083 as yet unmatched pairs. 22114 records in RAM.
INFO 2026-06-08 09:53:21 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:23:16s. Time for last 1,000,000: 2s. Last read position: chrX:49,039,330
INFO 2026-06-08 09:53:21 MarkDuplicates Tracking 26059 as yet unmatched pairs. 21090 records in RAM.
INFO 2026-06-08 09:53:23 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 1s. Last read position: chrX:53,431,468
INFO 2026-06-08 09:53:23 MarkDuplicates Tracking 24243 as yet unmatched pairs. 19274 records in RAM.
INFO 2026-06-08 09:53:25 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:23:20s. Time for last 1,000,000: 2s. Last read position: chrX:55,755,849
INFO 2026-06-08 09:53:25 MarkDuplicates Tracking 22331 as yet unmatched pairs. 17362 records in RAM.
INFO 2026-06-08 09:53:27 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:23:22s. Time for last 1,000,000: 2s. Last read position: chrX:71,134,835
INFO 2026-06-08 09:53:27 MarkDuplicates Tracking 20965 as yet unmatched pairs. 15996 records in RAM.
INFO 2026-06-08 09:53:29 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 1s. Last read position: chrX:76,175,610
INFO 2026-06-08 09:53:29 MarkDuplicates Tracking 19751 as yet unmatched pairs. 14782 records in RAM.
INFO 2026-06-08 09:53:31 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:23:26s. Time for last 1,000,000: 2s. Last read position: chrX:101,411,993
INFO 2026-06-08 09:53:31 MarkDuplicates Tracking 19120 as yet unmatched pairs. 14151 records in RAM.
INFO 2026-06-08 09:53:33 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 1s. Last read position: chrX:108,606,744
INFO 2026-06-08 09:53:33 MarkDuplicates Tracking 17279 as yet unmatched pairs. 12310 records in RAM.
INFO 2026-06-08 09:53:35 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 2s. Last read position: chrX:119,873,307
INFO 2026-06-08 09:53:35 MarkDuplicates Tracking 16392 as yet unmatched pairs. 11423 records in RAM.
INFO 2026-06-08 09:53:37 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 1s. Last read position: chrX:136,169,977
INFO 2026-06-08 09:53:37 MarkDuplicates Tracking 15336 as yet unmatched pairs. 10367 records in RAM.
INFO 2026-06-08 09:53:39 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:23:33s. Time for last 1,000,000: 2s. Last read position: chrX:153,726,128
INFO 2026-06-08 09:53:39 MarkDuplicates Tracking 13146 as yet unmatched pairs. 8177 records in RAM.
INFO 2026-06-08 09:53:41 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:23:35s. Time for last 1,000,000: 2s. Last read position: chrX:154,350,121
INFO 2026-06-08 09:53:41 MarkDuplicates Tracking 13608 as yet unmatched pairs. 8639 records in RAM.
INFO 2026-06-08 09:53:43 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:23:37s. Time for last 1,000,000: 1s. Last read position: chrX:154,358,205
INFO 2026-06-08 09:53:43 MarkDuplicates Tracking 13842 as yet unmatched pairs. 8873 records in RAM.
INFO 2026-06-08 09:53:45 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 2s. Last read position: chrX:154,362,099
INFO 2026-06-08 09:53:45 MarkDuplicates Tracking 10699 as yet unmatched pairs. 5730 records in RAM.
INFO 2026-06-08 09:53:47 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:23:42s. Time for last 1,000,000: 2s. Last read position: chrX:154,367,967
INFO 2026-06-08 09:53:47 MarkDuplicates Tracking 15317 as yet unmatched pairs. 10348 records in RAM.
INFO 2026-06-08 09:53:49 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 1s. Last read position: chrX:155,380,999
INFO 2026-06-08 09:53:49 MarkDuplicates Tracking 5066 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 09:53:51 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:23:45s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,222
INFO 2026-06-08 09:53:51 MarkDuplicates Tracking 2514 as yet unmatched pairs. 144 records in RAM.
INFO 2026-06-08 09:53:52 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:23:47s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,090
INFO 2026-06-08 09:53:52 MarkDuplicates Tracking 49 as yet unmatched pairs. 35 records in RAM.
INFO 2026-06-08 09:53:53 MarkDuplicates Read 633347077 records. 0 pairs never matched.
INFO 2026-06-08 09:54:36 MarkDuplicates After buildSortedReadEndLists freeMemory: 58259603880; totalMemory: 83214991360; maxMemory: 127137742848
INFO 2026-06-08 09:54:36 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-08 09:54:41 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 09:56:20 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:56:21 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:57:41 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:57:53 MarkDuplicates After generateDuplicateIndexes freeMemory: 204023424; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 09:57:53 MarkDuplicates Marking 453535879 records as duplicates.
INFO 2026-06-08 09:57:53 MarkDuplicates Found 11167461 optical duplicate clusters.
INFO 2026-06-08 09:57:53 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:58:09 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:21,876,337
INFO 2026-06-08 09:58:25 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 16s. Last read position: chr1:43,920,818
INFO 2026-06-08 09:58:42 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 16s. Last read position: chr1:116,949,283
INFO 2026-06-08 09:58:58 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:04s. Time for last 10,000,000: 16s. Last read position: chr1:155,190,746
INFO 2026-06-08 09:59:14 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 16s. Last read position: chr1:202,766,933
INFO 2026-06-08 09:59:30 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:37s. Time for last 10,000,000: 16s. Last read position: chr2:11,637,742
INFO 2026-06-08 09:59:47 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:53s. Time for last 10,000,000: 16s. Last read position: chr2:48,495,708
INFO 2026-06-08 10:00:03 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 16s. Last read position: chr2:109,836,986
INFO 2026-06-08 10:00:20 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:26s. Time for last 10,000,000: 16s. Last read position: chr2:190,930,436
INFO 2026-06-08 10:00:36 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:43s. Time for last 10,000,000: 16s. Last read position: chr2:237,357,842
INFO 2026-06-08 10:00:52 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 16s. Last read position: chr3:47,877,446
INFO 2026-06-08 10:01:09 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 16s. Last read position: chr3:112,345,114
INFO 2026-06-08 10:01:25 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:32s. Time for last 10,000,000: 16s. Last read position: chr3:184,308,533
INFO 2026-06-08 10:01:42 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:49s. Time for last 10,000,000: 16s. Last read position: chr4:39,755,655
INFO 2026-06-08 10:01:58 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:05s. Time for last 10,000,000: 16s. Last read position: chr4:142,429,194
INFO 2026-06-08 10:02:15 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:22s. Time for last 10,000,000: 16s. Last read position: chr5:72,197,050
INFO 2026-06-08 10:02:31 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:38s. Time for last 10,000,000: 16s. Last read position: chr5:141,626,013
INFO 2026-06-08 10:02:48 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:55s. Time for last 10,000,000: 16s. Last read position: chr5:179,878,325
INFO 2026-06-08 10:03:04 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:11s. Time for last 10,000,000: 16s. Last read position: chr6:31,999,027
INFO 2026-06-08 10:03:20 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:27s. Time for last 10,000,000: 16s. Last read position: chr6:56,552,298
INFO 2026-06-08 10:03:37 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:43s. Time for last 10,000,000: 16s. Last read position: chr6:151,880,662
INFO 2026-06-08 10:03:53 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:00s. Time for last 10,000,000: 16s. Last read position: chr7:27,182,928
INFO 2026-06-08 10:04:09 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:16s. Time for last 10,000,000: 16s. Last read position: chr7:92,102,816
INFO 2026-06-08 10:04:26 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:33s. Time for last 10,000,000: 16s. Last read position: chr7:135,598,121
INFO 2026-06-08 10:04:42 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:49s. Time for last 10,000,000: 16s. Last read position: chr8:36,711,458
INFO 2026-06-08 10:04:59 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:05s. Time for last 10,000,000: 16s. Last read position: chr8:120,541,943
INFO 2026-06-08 10:05:15 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:21s. Time for last 10,000,000: 16s. Last read position: chr9:35,072,368
INFO 2026-06-08 10:05:31 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:38s. Time for last 10,000,000: 16s. Last read position: chr9:115,086,168
INFO 2026-06-08 10:05:47 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:54s. Time for last 10,000,000: 16s. Last read position: chr9:136,921,103
INFO 2026-06-08 10:06:04 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 16s. Last read position: chr10:63,189,431
INFO 2026-06-08 10:06:20 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:27s. Time for last 10,000,000: 16s. Last read position: chr10:102,367,139
INFO 2026-06-08 10:06:36 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:43s. Time for last 10,000,000: 16s. Last read position: chr11:1,230,937
INFO 2026-06-08 10:06:52 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:58s. Time for last 10,000,000: 15s. Last read position: chr11:1,249,992
INFO 2026-06-08 10:07:08 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:15s. Time for last 10,000,000: 16s. Last read position: chr11:43,414,658
INFO 2026-06-08 10:07:24 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:31s. Time for last 10,000,000: 16s. Last read position: chr11:65,182,763
INFO 2026-06-08 10:07:41 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 16s. Last read position: chr11:101,042,077
INFO 2026-06-08 10:07:57 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:04s. Time for last 10,000,000: 16s. Last read position: chr12:6,823,963
INFO 2026-06-08 10:08:13 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:20s. Time for last 10,000,000: 16s. Last read position: chr12:53,459,295
INFO 2026-06-08 10:08:30 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:37s. Time for last 10,000,000: 16s. Last read position: chr12:95,300,453
INFO 2026-06-08 10:08:46 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:53s. Time for last 10,000,000: 16s. Last read position: chr13:20,061,197
INFO 2026-06-08 10:09:03 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 16s. Last read position: chr14:21,495,261
INFO 2026-06-08 10:09:20 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:26s. Time for last 10,000,000: 16s. Last read position: chr14:74,810,271
INFO 2026-06-08 10:09:36 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 16s. Last read position: chr15:38,351,259
INFO 2026-06-08 10:09:52 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:59s. Time for last 10,000,000: 16s. Last read position: chr15:73,702,493
INFO 2026-06-08 10:10:09 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:15s. Time for last 10,000,000: 16s. Last read position: chr16:2,111,255
INFO 2026-06-08 10:10:25 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:32s. Time for last 10,000,000: 16s. Last read position: chr16:18,350,670
INFO 2026-06-08 10:10:41 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:48s. Time for last 10,000,000: 16s. Last read position: chr16:31,499,496
INFO 2026-06-08 10:10:57 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:04s. Time for last 10,000,000: 16s. Last read position: chr16:89,281,742
INFO 2026-06-08 10:11:14 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:20s. Time for last 10,000,000: 16s. Last read position: chr17:17,794,312
INFO 2026-06-08 10:11:30 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:37s. Time for last 10,000,000: 16s. Last read position: chr17:42,585,240
INFO 2026-06-08 10:11:46 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 16s. Last read position: chr17:58,312,086
INFO 2026-06-08 10:12:03 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:09s. Time for last 10,000,000: 16s. Last read position: chr17:81,541,356
INFO 2026-06-08 10:12:19 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:26s. Time for last 10,000,000: 16s. Last read position: chr19:1,037,696
INFO 2026-06-08 10:12:35 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 16s. Last read position: chr19:10,274,837
INFO 2026-06-08 10:12:51 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:58s. Time for last 10,000,000: 16s. Last read position: chr19:19,498,620
INFO 2026-06-08 10:13:08 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:14s. Time for last 10,000,000: 16s. Last read position: chr19:43,623,342
INFO 2026-06-08 10:13:24 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:31s. Time for last 10,000,000: 16s. Last read position: chr19:55,644,819
INFO 2026-06-08 10:13:40 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:47s. Time for last 10,000,000: 16s. Last read position: chr20:43,536,222
INFO 2026-06-08 10:13:56 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:03s. Time for last 10,000,000: 16s. Last read position: chr21:32,352,710
INFO 2026-06-08 10:14:13 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:19s. Time for last 10,000,000: 16s. Last read position: chr22:28,107,856
INFO 2026-06-08 10:14:29 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:36s. Time for last 10,000,000: 16s. Last read position: chr22:49,924,339
INFO 2026-06-08 10:14:45 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:52s. Time for last 10,000,000: 16s. Last read position: chrX:71,134,835
INFO 2026-06-08 10:15:01 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:08s. Time for last 10,000,000: 16s. Last read position: chrX:154,367,967
INFO 2026-06-08 10:15:14 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 10:15:14 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 10:15:14 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 10:15:14 MarkDuplicates Before output close freeMemory: 203961504; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 10:15:14 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 10:15:14 MarkDuplicates After output close freeMemory: 104223040; totalMemory: 134217728; maxMemory: 127137742848
[Mon Jun 08 10:15:14 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 45.19 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory