File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/1b2ffaa9f315b26286141676b10c0e/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 459
  Pass (FILTER=PASS): 68 (14.8%)
  Fail (FILTER=FAIL): 391 (85.2%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 9
  All 9 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 74
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 49
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 41
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 31
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 25
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 22
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 19
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 19
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 16
  confidence_below_min(low<high): 16
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 14
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 13
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 10
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 8
  total_reads_below_min(5.0<8.0): 5

Breakdown by confidence:
  high: 68 pass, 19 fail (total: 87)
  low: 0 pass, 182 fail (total: 182)
  medium: 0 pass, 190 fail (total: 190)
Arriba filter: 459 rows -> 68 PASS; wrote 659_ecd-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered.tsv and 659_ecd-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_ecd-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filter_summary.txt