File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/ab449f3e60d78bb530ee8bbcda952d/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:10:33
                             Started mapping on |	Jun 08 10:17:12
                                    Finished on |	Jun 08 11:39:22
       Mapping speed, Million of reads per hour |	215.93

                          Number of input reads |	295700417
                      Average input read length |	267
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285826186
                        Uniquely mapped reads % |	96.66%
                          Average mapped length |	266.24
                       Number of splices: Total |	356698088
            Number of splices: Annotated (sjdb) |	351822225
                       Number of splices: GT/AG |	352780210
                       Number of splices: GC/AG |	2302623
                       Number of splices: AT/AC |	236394
               Number of splices: Non-canonical |	1378861
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.98
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.55
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7189244
             % of reads mapped to multiple loci |	2.43%
        Number of reads mapped to too many loci |	450765
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2056154
                 % of reads unmapped: too short |	0.70%
                Number of reads unmapped: other |	178068
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%