File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/a87dfaac344d2855d933580fb03698/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:56:01
                             Started mapping on |	Jun 08 09:02:19
                                    Finished on |	Jun 08 09:44:42
       Mapping speed, Million of reads per hour |	263.82

                          Number of input reads |	186358289
                      Average input read length |	264
                                    UNIQUE READS:
                   Uniquely mapped reads number |	180303724
                        Uniquely mapped reads % |	96.75%
                          Average mapped length |	263.31
                       Number of splices: Total |	212638080
            Number of splices: Annotated (sjdb) |	209716220
                       Number of splices: GT/AG |	210194302
                       Number of splices: GC/AG |	1392233
                       Number of splices: AT/AC |	171632
               Number of splices: Non-canonical |	879913
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.07
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.57
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4403020
             % of reads mapped to multiple loci |	2.36%
        Number of reads mapped to too many loci |	272274
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1199186
                 % of reads unmapped: too short |	0.64%
                Number of reads unmapped: other |	180085
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%