File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/061e591b04bc0cebccbc4759d14f23/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:59:40
                             Started mapping on |	Jun 08 10:06:09
                                    Finished on |	Jun 08 10:59:35
       Mapping speed, Million of reads per hour |	317.77

                          Number of input reads |	282992258
                      Average input read length |	259
                                    UNIQUE READS:
                   Uniquely mapped reads number |	268714650
                        Uniquely mapped reads % |	94.95%
                          Average mapped length |	258.62
                       Number of splices: Total |	296772924
            Number of splices: Annotated (sjdb) |	292614150
                       Number of splices: GT/AG |	293216274
                       Number of splices: GC/AG |	2089234
                       Number of splices: AT/AC |	251558
               Number of splices: Non-canonical |	1215858
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.57
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11313809
             % of reads mapped to multiple loci |	4.00%
        Number of reads mapped to too many loci |	684558
             % of reads mapped to too many loci |	0.24%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1902199
                 % of reads unmapped: too short |	0.67%
                Number of reads unmapped: other |	377042
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%