Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/86189c3c146de160fd3b0627a53560/tih_rna_sample_00089_B23WHTKLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/6a3b5f34fc1f15109f8c5d77d912aa/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/6a3b5f34fc1f15109f8c5d77d912aa/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory