File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/8f745e02853c2dea5e5c9c4dd235e9/.command.log
Size
10.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_c95-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/8f745e02853c2dea5e5c9c4dd235e9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8c73b61309255f91a0b789cd201f62/659_c95-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/8dba82dea36c23c382179f33ff0816/659_c95-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/8f745e02853c2dea5e5c9c4dd235e9/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ERBB2--FP236383.3
starfusion
arriba
FP236383.3--PPP1R1B
starfusion
arriba
LUC7L3--LINC01982
starfusion
arriba
ERBB2--THRA
starfusion
MOB1A--DCTN1
starfusion
arriba
TBC1D16--GAA
starfusion
arriba
SMG6--TSR1
starfusion
arriba
TLK2--AC240565.1
starfusion
NME2--SPAG9
starfusion
BAIAP2--FP236383.6
starfusion
MYO5B--ACAA2
starfusion
TLK2P1--AC110079.1
starfusion
NUS1--AC114501.3
starfusion
arriba
MRNIP--RUFY1
starfusion
GRB7--STARD3
starfusion
PCMTD2--IKZF3
starfusion
arriba
AL669831.1--SEPTIN14
starfusion
arriba
ARID1A--SELENON
starfusion
LINC02614--CYP4F8
starfusion
C16orf70--CES4A
starfusion
arriba
AFDN--AFDN
arriba
SLC38A1--SLC38A1
arriba
SLC38A1--SLC38A2
arriba
ZPLD1--NFKBIZ
arriba
BAIAP2--FP236383.3
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
ITPR1--ITPR1
arriba
TVP23C--CDRT4
arriba
CCDC169--SOHLH2
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
TLK2--FAM157A
arriba
PXYLP1--NPM1P28
arriba
PXYLP1--AC092925.1
arriba
AC092807.3--DDAH1
arriba
KLRC4--KLRK1
arriba
PITPNC1--AC092969.1
arriba
SLFN11--SLFN12
arriba

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Processing ERBB2--FP236383.3:   0%|          | 0/48 [00:00<?, ?it/s]
Processing ERBB2--FP236383.3:   2%|▏         | 1/48 [00:00<00:05,  9.23it/s]
Processing FP236383.3--PPP1R1B:   2%|▏         | 1/48 [00:00<00:05,  9.23it/s]
Processing FP236383.3--PPP1R1B:   4%|▍         | 2/48 [00:00<00:04,  9.47it/s]
Processing LUC7L3--LINC01982:   4%|▍         | 2/48 [00:00<00:04,  9.47it/s]  
Processing LUC7L3--LINC01982:   6%|▋         | 3/48 [00:00<00:04,  9.55it/s]
Processing ERBB2--THRA:   6%|▋         | 3/48 [00:00<00:04,  9.55it/s]      
Processing ERBB2--THRA:   8%|▊         | 4/48 [00:00<00:04,  9.59it/s]
Processing MOB1A--DCTN1:   8%|▊         | 4/48 [00:00<00:04,  9.59it/s]
Processing MOB1A--DCTN1:  10%|█         | 5/48 [00:00<00:04,  9.61it/s]
Processing TBC1D16--GAA:  10%|█         | 5/48 [00:00<00:04,  9.61it/s]
Processing TBC1D16--GAA:  12%|█▎        | 6/48 [00:00<00:04,  9.62it/s]
Processing SMG6--TSR1:  12%|█▎        | 6/48 [00:00<00:04,  9.62it/s]  
Processing SMG6--TSR1:  15%|█▍        | 7/48 [00:00<00:04,  9.63it/s]
Processing TLK2--AC240565.1:  15%|█▍        | 7/48 [00:00<00:04,  9.63it/s]
Processing TLK2--AC240565.1:  17%|█▋        | 8/48 [00:00<00:04,  9.64it/s]
Processing NME2--SPAG9:  17%|█▋        | 8/48 [00:00<00:04,  9.64it/s]     
Processing NME2--SPAG9:  19%|█▉        | 9/48 [00:00<00:04,  9.64it/s]
Processing BAIAP2--FP236383.6:  19%|█▉        | 9/48 [00:00<00:04,  9.64it/s]
Processing BAIAP2--FP236383.6:  21%|██        | 10/48 [00:01<00:03,  9.64it/s]
Processing MYO5B--ACAA2:  21%|██        | 10/48 [00:01<00:03,  9.64it/s]      
Processing MYO5B--ACAA2:  23%|██▎       | 11/48 [00:01<00:03,  9.65it/s]
Processing TLK2P1--AC110079.1:  23%|██▎       | 11/48 [00:01<00:03,  9.65it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 12/48 [00:01<00:03,  9.65it/s]
Processing NUS1--AC114501.3:  25%|██▌       | 12/48 [00:01<00:03,  9.65it/s]  
Processing NUS1--AC114501.3:  27%|██▋       | 13/48 [00:01<00:03,  9.65it/s]
Processing MRNIP--RUFY1:  27%|██▋       | 13/48 [00:01<00:03,  9.65it/s]    
Processing MRNIP--RUFY1:  29%|██▉       | 14/48 [00:01<00:03,  9.65it/s]
Processing GRB7--STARD3:  29%|██▉       | 14/48 [00:01<00:03,  9.65it/s]
Processing GRB7--STARD3:  31%|███▏      | 15/48 [00:01<00:03,  9.65it/s]
Processing PCMTD2--IKZF3:  31%|███▏      | 15/48 [00:01<00:03,  9.65it/s]
Processing PCMTD2--IKZF3:  33%|███▎      | 16/48 [00:01<00:03,  9.65it/s]
Processing AL669831.1--SEPTIN14:  33%|███▎      | 16/48 [00:01<00:03,  9.65it/s]
Processing AL669831.1--SEPTIN14:  35%|███▌      | 17/48 [00:01<00:03,  9.65it/s]
Processing ARID1A--SELENON:  35%|███▌      | 17/48 [00:01<00:03,  9.65it/s]     
Processing ARID1A--SELENON:  38%|███▊      | 18/48 [00:01<00:03,  9.66it/s]
Processing LINC02614--CYP4F8:  38%|███▊      | 18/48 [00:01<00:03,  9.66it/s]
Processing LINC02614--CYP4F8:  40%|███▉      | 19/48 [00:01<00:03,  9.65it/s]
Processing C16orf70--CES4A:  40%|███▉      | 19/48 [00:01<00:03,  9.65it/s]  
Processing C16orf70--CES4A:  42%|████▏     | 20/48 [00:02<00:02,  9.65it/s]
Processing AFDN--AFDN:  42%|████▏     | 20/48 [00:02<00:02,  9.65it/s]     
Processing AFDN--AFDN:  44%|████▍     | 21/48 [00:02<00:02,  9.65it/s]
Processing SLC38A1--SLC38A1:  44%|████▍     | 21/48 [00:02<00:02,  9.65it/s]
Processing SLC38A1--SLC38A1:  46%|████▌     | 22/48 [00:02<00:02,  9.65it/s]
Processing SLC38A1--SLC38A2:  46%|████▌     | 22/48 [00:02<00:02,  9.65it/s]
Processing SLC38A1--SLC38A2:  48%|████▊     | 23/48 [00:02<00:02,  9.65it/s]
Processing ZPLD1--NFKBIZ:  48%|████▊     | 23/48 [00:02<00:02,  9.65it/s]   
Processing ZPLD1--NFKBIZ:  50%|█████     | 24/48 [00:02<00:02,  9.65it/s]
Processing BAIAP2--FP236383.3:  50%|█████     | 24/48 [00:02<00:02,  9.65it/s]
Processing BAIAP2--FP236383.3:  52%|█████▏    | 25/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  52%|█████▏    | 25/48 [00:02<00:02,  9.65it/s]  
Processing PCDHGB2--PCDHGC5:  54%|█████▍    | 26/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  54%|█████▍    | 26/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  56%|█████▋    | 27/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  56%|█████▋    | 27/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  58%|█████▊    | 28/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  58%|█████▊    | 28/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  60%|██████    | 29/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  60%|██████    | 29/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  62%|██████▎   | 30/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  62%|██████▎   | 30/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  65%|██████▍   | 31/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  65%|██████▍   | 31/48 [00:03<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGB7:  67%|██████▋   | 32/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  67%|██████▋   | 32/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  69%|██████▉   | 33/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  69%|██████▉   | 33/48 [00:03<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  71%|███████   | 34/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  71%|███████   | 34/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  73%|███████▎  | 35/48 [00:03<00:01,  9.65it/s]
Processing ITPR1--ITPR1:  73%|███████▎  | 35/48 [00:03<00:01,  9.65it/s]     
Processing ITPR1--ITPR1:  75%|███████▌  | 36/48 [00:03<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  75%|███████▌  | 36/48 [00:03<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  77%|███████▋  | 37/48 [00:03<00:01,  9.65it/s]
Processing CCDC169--SOHLH2:  77%|███████▋  | 37/48 [00:03<00:01,  9.65it/s]
Processing CCDC169--SOHLH2:  79%|███████▉  | 38/48 [00:03<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC1:  79%|███████▉  | 38/48 [00:03<00:01,  9.65it/s]
Processing PCDHA6--PCDHAC1:  81%|████████▏ | 39/48 [00:04<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  81%|████████▏ | 39/48 [00:04<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  83%|████████▎ | 40/48 [00:04<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13:  83%|████████▎ | 40/48 [00:04<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13:  85%|████████▌ | 41/48 [00:04<00:00,  9.65it/s]
Processing TLK2--FAM157A:  85%|████████▌ | 41/48 [00:04<00:00,  9.65it/s]  
Processing TLK2--FAM157A:  88%|████████▊ | 42/48 [00:04<00:00,  9.65it/s]
Processing PXYLP1--NPM1P28:  88%|████████▊ | 42/48 [00:04<00:00,  9.65it/s]
Processing PXYLP1--NPM1P28:  90%|████████▉ | 43/48 [00:04<00:00,  9.65it/s]
Processing PXYLP1--AC092925.1:  90%|████████▉ | 43/48 [00:04<00:00,  9.65it/s]
Processing PXYLP1--AC092925.1:  92%|█████████▏| 44/48 [00:04<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  92%|█████████▏| 44/48 [00:04<00:00,  9.65it/s] 
Processing AC092807.3--DDAH1:  94%|█████████▍| 45/48 [00:04<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  94%|█████████▍| 45/48 [00:04<00:00,  9.65it/s]     
Processing KLRC4--KLRK1:  96%|█████████▌| 46/48 [00:04<00:00,  9.65it/s]
Processing PITPNC1--AC092969.1:  96%|█████████▌| 46/48 [00:04<00:00,  9.65it/s]
Processing PITPNC1--AC092969.1:  98%|█████████▊| 47/48 [00:04<00:00,  9.65it/s]
Processing SLFN11--SLFN12:  98%|█████████▊| 47/48 [00:04<00:00,  9.65it/s]     
Processing SLFN11--SLFN12: 100%|██████████| 48/48 [00:04<00:00,  9.65it/s]
Processing SLFN11--SLFN12: 100%|██████████| 48/48 [00:04<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory