File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/e4a4c201f80c92feb144e64b241477/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:53:40
                             Started mapping on |	Jun 08 09:02:28
                                    Finished on |	Jun 08 09:48:28
       Mapping speed, Million of reads per hour |	225.08

                          Number of input reads |	172562915
                      Average input read length |	250
                                    UNIQUE READS:
                   Uniquely mapped reads number |	166034146
                        Uniquely mapped reads % |	96.22%
                          Average mapped length |	249.91
                       Number of splices: Total |	177274017
            Number of splices: Annotated (sjdb) |	173368220
                       Number of splices: GT/AG |	174685341
                       Number of splices: GC/AG |	1328112
                       Number of splices: AT/AC |	155374
               Number of splices: Non-canonical |	1105190
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.20
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.63
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4783678
             % of reads mapped to multiple loci |	2.77%
        Number of reads mapped to too many loci |	250016
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1130921
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	364154
                     % of reads unmapped: other |	0.21%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%