Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/2d2719152e2ac64c2824c76f6c01c0/659_cIX-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/b6db2a2c5a0fd295af2e76270cb410/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/b6db2a2c5a0fd295af2e76270cb410/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/7528169e908d4b9c7b0c09fb764b2c/659_cIX-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
TNS1--ALK
starfusion
arriba
TNFAIP8L3--CYP19A1
starfusion
arriba
CASC15--GRIA4
starfusion
arriba
ARHGAP1--AC068051.1
starfusion
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
MDH1--PAUPAR
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
PCDHA10--PCDHAC1
arriba
AC092807.3--DDAH1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
PCDHA11--PCDHAC1
arriba
TVP23C--CDRT4
arriba
0%| | 0/16 [00:00<?, ?it/s]
Processing TNS1--ALK: 0%| | 0/16 [00:00<?, ?it/s]
Processing TNS1--ALK: 6%|▋ | 1/16 [00:00<00:01, 9.26it/s]
Processing TNFAIP8L3--CYP19A1: 6%|▋ | 1/16 [00:00<00:01, 9.26it/s]
Processing TNFAIP8L3--CYP19A1: 12%|█▎ | 2/16 [00:00<00:01, 9.48it/s]
Processing CASC15--GRIA4: 12%|█▎ | 2/16 [00:00<00:01, 9.48it/s]
Processing CASC15--GRIA4: 19%|█▉ | 3/16 [00:00<00:01, 9.56it/s]
Processing ARHGAP1--AC068051.1: 19%|█▉ | 3/16 [00:00<00:01, 9.56it/s]
Processing ARHGAP1--AC068051.1: 25%|██▌ | 4/16 [00:00<00:01, 9.59it/s]
Processing PCDHA6--PCDHAC2: 25%|██▌ | 4/16 [00:00<00:01, 9.59it/s]
Processing PCDHA6--PCDHAC2: 31%|███▏ | 5/16 [00:00<00:01, 9.62it/s]
Processing PCDHA6--PCDHA13: 31%|███▏ | 5/16 [00:00<00:01, 9.62it/s]
Processing PCDHA6--PCDHA13: 38%|███▊ | 6/16 [00:00<00:01, 9.63it/s]
Processing PCDHA6--PCDHAC1: 38%|███▊ | 6/16 [00:00<00:01, 9.63it/s]
Processing PCDHA6--PCDHAC1: 44%|████▍ | 7/16 [00:00<00:00, 9.64it/s]
Processing MDH1--PAUPAR: 44%|████▍ | 7/16 [00:00<00:00, 9.64it/s]
Processing MDH1--PAUPAR: 50%|█████ | 8/16 [00:00<00:00, 9.64it/s]
Processing PCDHA10--PCDHAC2: 50%|█████ | 8/16 [00:00<00:00, 9.64it/s]
Processing PCDHA10--PCDHAC2: 56%|█████▋ | 9/16 [00:00<00:00, 9.64it/s]
Processing PCDHA10--PCDHA13: 56%|█████▋ | 9/16 [00:00<00:00, 9.64it/s]
Processing PCDHA10--PCDHA13: 62%|██████▎ | 10/16 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC1: 62%|██████▎ | 10/16 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC1: 69%|██████▉ | 11/16 [00:01<00:00, 9.65it/s]
Processing AC092807.3--DDAH1: 69%|██████▉ | 11/16 [00:01<00:00, 9.65it/s]
Processing AC092807.3--DDAH1: 75%|███████▌ | 12/16 [00:01<00:00, 9.65it/s]
Processing PCDHA11--PCDHAC2: 75%|███████▌ | 12/16 [00:01<00:00, 9.65it/s]
Processing PCDHA11--PCDHAC2: 81%|████████▏ | 13/16 [00:01<00:00, 9.65it/s]
Processing PCDHA11--PCDHA13: 81%|████████▏ | 13/16 [00:01<00:00, 9.65it/s]
Processing PCDHA11--PCDHA13: 88%|████████▊ | 14/16 [00:01<00:00, 9.65it/s]
Processing PCDHA11--PCDHAC1: 88%|████████▊ | 14/16 [00:01<00:00, 9.65it/s]
Processing PCDHA11--PCDHAC1: 94%|█████████▍| 15/16 [00:01<00:00, 9.65it/s]
Processing TVP23C--CDRT4: 94%|█████████▍| 15/16 [00:01<00:00, 9.65it/s]
Processing TVP23C--CDRT4: 100%|██████████| 16/16 [00:01<00:00, 9.65it/s]
Processing TVP23C--CDRT4: 100%|██████████| 16/16 [00:01<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory