Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/2d2719152e2ac64c2824c76f6c01c0/659_cIX-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/b6db2a2c5a0fd295af2e76270cb410/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/b6db2a2c5a0fd295af2e76270cb410/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/7528169e908d4b9c7b0c09fb764b2c/659_cIX-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TNS1--ALK
starfusion
arriba
TNFAIP8L3--CYP19A1
starfusion
arriba
CASC15--GRIA4
starfusion
arriba
ARHGAP1--AC068051.1
starfusion
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
MDH1--PAUPAR
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
PCDHA10--PCDHAC1
arriba
AC092807.3--DDAH1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
PCDHA11--PCDHAC1
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/16 [00:00<?, ?it/s]
Processing TNS1--ALK:   0%|          | 0/16 [00:00<?, ?it/s]
Processing TNS1--ALK:   6%|▋         | 1/16 [00:00<00:01,  9.26it/s]
Processing TNFAIP8L3--CYP19A1:   6%|▋         | 1/16 [00:00<00:01,  9.26it/s]
Processing TNFAIP8L3--CYP19A1:  12%|█▎        | 2/16 [00:00<00:01,  9.48it/s]
Processing CASC15--GRIA4:  12%|█▎        | 2/16 [00:00<00:01,  9.48it/s]     
Processing CASC15--GRIA4:  19%|█▉        | 3/16 [00:00<00:01,  9.56it/s]
Processing ARHGAP1--AC068051.1:  19%|█▉        | 3/16 [00:00<00:01,  9.56it/s]
Processing ARHGAP1--AC068051.1:  25%|██▌       | 4/16 [00:00<00:01,  9.59it/s]
Processing PCDHA6--PCDHAC2:  25%|██▌       | 4/16 [00:00<00:01,  9.59it/s]    
Processing PCDHA6--PCDHAC2:  31%|███▏      | 5/16 [00:00<00:01,  9.62it/s]
Processing PCDHA6--PCDHA13:  31%|███▏      | 5/16 [00:00<00:01,  9.62it/s]
Processing PCDHA6--PCDHA13:  38%|███▊      | 6/16 [00:00<00:01,  9.63it/s]
Processing PCDHA6--PCDHAC1:  38%|███▊      | 6/16 [00:00<00:01,  9.63it/s]
Processing PCDHA6--PCDHAC1:  44%|████▍     | 7/16 [00:00<00:00,  9.64it/s]
Processing MDH1--PAUPAR:  44%|████▍     | 7/16 [00:00<00:00,  9.64it/s]   
Processing MDH1--PAUPAR:  50%|█████     | 8/16 [00:00<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC2:  50%|█████     | 8/16 [00:00<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC2:  56%|█████▋    | 9/16 [00:00<00:00,  9.64it/s]
Processing PCDHA10--PCDHA13:  56%|█████▋    | 9/16 [00:00<00:00,  9.64it/s]
Processing PCDHA10--PCDHA13:  62%|██████▎   | 10/16 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  62%|██████▎   | 10/16 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  69%|██████▉   | 11/16 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  69%|██████▉   | 11/16 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  75%|███████▌  | 12/16 [00:01<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC2:  75%|███████▌  | 12/16 [00:01<00:00,  9.65it/s] 
Processing PCDHA11--PCDHAC2:  81%|████████▏ | 13/16 [00:01<00:00,  9.65it/s]
Processing PCDHA11--PCDHA13:  81%|████████▏ | 13/16 [00:01<00:00,  9.65it/s]
Processing PCDHA11--PCDHA13:  88%|████████▊ | 14/16 [00:01<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC1:  88%|████████▊ | 14/16 [00:01<00:00,  9.65it/s]
Processing PCDHA11--PCDHAC1:  94%|█████████▍| 15/16 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  94%|█████████▍| 15/16 [00:01<00:00,  9.65it/s]   
Processing TVP23C--CDRT4: 100%|██████████| 16/16 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4: 100%|██████████| 16/16 [00:01<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory