File Info

Filename
659_cIX-T1-TRNA-1_B23WHTKLT4_1.fusions.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/b6db2a2c5a0fd295af2e76270cb410/659_cIX-T1-TRNA-1_B23WHTKLT4_1.fusions.csv
Size
4.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_cIX-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab
Fusion Databases Score Explained score arriba starfusion
TNS1--ALK Mitelman 0.375 0.5 * (0.125 + 0.125) + 0.5 * (0.500) position: chr2:217847510#chr2:29251267,reading-frame: in-frame,type: deletion,split_reads1: 300,split_reads2: 300,discordant_mates: 11,coverage1: 16452,coverage2: 7249,confidence: high position: chr2:217847510:-#chr2:29251267:-,junction_reads: 810,spanning_reads: 18,ffmp: 2.7989
TNFAIP8L3--CYP19A1 0.125 0.5 * (0.125 + 0.125) + 0.5 * () position: chr15:51094544#chr15:51242950,reading-frame: out-of-frame,type: duplication,split_reads1: 23,split_reads2: 27,discordant_mates: 0,coverage1: 22812,coverage2: 205,confidence: high position: chr15:51094544:-#chr15:51242950:-,junction_reads: 53,spanning_reads: 0,ffmp: 0.1792
CASC15--GRIA4 0.125 0.5 * (0.125 + 0.125) + 0.5 * () position: chr6:22020542#chr11:105862024,reading-frame: .,type: translocation,split_reads1: 7,split_reads2: 5,discordant_mates: 0,coverage1: 12,coverage2: 75,confidence: high position: chr6:22020542:+#chr11:105862024:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0439
ARHGAP1--AC068051.1 0.125 0.5 * (0.125 + 0.125) + 0.5 * () position: chr11:46688173#chr2:214436317,reading-frame: out-of-frame,type: translocation,split_reads1: 18,split_reads2: 10,discordant_mates: 2,coverage1: 10898,coverage2: 74,confidence: high position: chr11:46688173:-#chr2:214473769:-,junction_reads: 12,spanning_reads: 2,ffmp: 0.0424
PCDHA6--PCDHAC2 0.062 0.5 * (0.125) + 0.5 * () position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 19,split_reads2: 35,discordant_mates: 0,coverage1: 799,coverage2: 2617,confidence: high
PCDHA6--PCDHA13 0.062 0.5 * (0.125) + 0.5 * () position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 19,split_reads2: 35,discordant_mates: 0,coverage1: 799,coverage2: 2617,confidence: high
PCDHA6--PCDHAC1 0.062 0.5 * (0.125) + 0.5 * () position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 19,split_reads2: 35,discordant_mates: 0,coverage1: 799,coverage2: 2617,confidence: high
MDH1--PAUPAR 0.062 0.5 * (0.125) + 0.5 * () position: chr2:63595519#chr11:31904630,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 25,split_reads2: 9,discordant_mates: 1,coverage1: 4680,coverage2: 21,confidence: high
PCDHA10--PCDHAC2 0.062 0.5 * (0.125) + 0.5 * () position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 14,split_reads2: 18,discordant_mates: 1,coverage1: 1057,coverage2: 2617,confidence: high
PCDHA10--PCDHA13 0.062 0.5 * (0.125) + 0.5 * () position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 14,split_reads2: 18,discordant_mates: 1,coverage1: 1057,coverage2: 2617,confidence: high
PCDHA10--PCDHAC1 0.062 0.5 * (0.125) + 0.5 * () position: chr5:140858436#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 14,split_reads2: 18,discordant_mates: 1,coverage1: 1057,coverage2: 2617,confidence: high
AC092807.3--DDAH1 0.062 0.5 * (0.125) + 0.5 * () position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 15,split_reads2: 12,discordant_mates: 2,coverage1: 136,coverage2: 540,confidence: high
PCDHA11--PCDHAC2 0.062 0.5 * (0.125) + 0.5 * () position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 12,split_reads2: 6,discordant_mates: 0,coverage1: 543,coverage2: 2617,confidence: high
PCDHA11--PCDHA13 0.062 0.5 * (0.125) + 0.5 * () position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 12,split_reads2: 6,discordant_mates: 0,coverage1: 543,coverage2: 2617,confidence: high
PCDHA11--PCDHAC1 0.062 0.5 * (0.125) + 0.5 * () position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 12,split_reads2: 6,discordant_mates: 0,coverage1: 543,coverage2: 2617,confidence: high
TVP23C--CDRT4 FusionGDB2 0.062 0.5 * (0.125) + 0.5 * (0.000) position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 8,split_reads2: 6,discordant_mates: 0,coverage1: 446,coverage2: 187,confidence: high
17 rows