Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/52df31a6a8c8f75c89c3c722d55052/659_bNS-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/2cb56d52c9912f948e8d67c400308d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/2cb56d52c9912f948e8d67c400308d/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/7bf12999cff785c81798b54fe1cce0/659_bNS-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
EML4--ALK
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
IGFL1P2--HIF3A
arriba
TVP23C--CDRT4
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
0%| | 0/16 [00:00<?, ?it/s]
Processing EML4--ALK: 0%| | 0/16 [00:00<?, ?it/s]
Processing EML4--ALK: 6%|▋ | 1/16 [00:00<00:01, 9.26it/s]
Processing PCDHGB2--PCDHGA8: 6%|▋ | 1/16 [00:00<00:01, 9.26it/s]
Processing PCDHGB2--PCDHGA8: 12%|█▎ | 2/16 [00:00<00:01, 9.48it/s]
Processing PCDHGB2--PCDHGB6: 12%|█▎ | 2/16 [00:00<00:01, 9.48it/s]
Processing PCDHGB2--PCDHGB6: 19%|█▉ | 3/16 [00:00<00:01, 9.56it/s]
Processing PCDHGB2--PCDHGC5: 19%|█▉ | 3/16 [00:00<00:01, 9.56it/s]
Processing PCDHGB2--PCDHGC5: 25%|██▌ | 4/16 [00:00<00:01, 9.59it/s]
Processing PCDHGB2--PCDHGC4: 25%|██▌ | 4/16 [00:00<00:01, 9.59it/s]
Processing PCDHGB2--PCDHGC4: 31%|███▏ | 5/16 [00:00<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGA10: 31%|███▏ | 5/16 [00:00<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGA10: 38%|███▊ | 6/16 [00:00<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 38%|███▊ | 6/16 [00:00<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 44%|████▍ | 7/16 [00:00<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA12: 44%|████▍ | 7/16 [00:00<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA12: 50%|█████ | 8/16 [00:00<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGC3: 50%|█████ | 8/16 [00:00<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGC3: 56%|█████▋ | 9/16 [00:00<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 56%|█████▋ | 9/16 [00:00<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 62%|██████▎ | 10/16 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 62%|██████▎ | 10/16 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 69%|██████▉ | 11/16 [00:01<00:00, 9.65it/s]
Processing IGFL1P2--HIF3A: 69%|██████▉ | 11/16 [00:01<00:00, 9.65it/s]
Processing IGFL1P2--HIF3A: 75%|███████▌ | 12/16 [00:01<00:00, 9.65it/s]
Processing TVP23C--CDRT4: 75%|███████▌ | 12/16 [00:01<00:00, 9.65it/s]
Processing TVP23C--CDRT4: 81%|████████▏ | 13/16 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC1: 81%|████████▏ | 13/16 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC1: 88%|████████▊ | 14/16 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC2: 88%|████████▊ | 14/16 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC2: 94%|█████████▍| 15/16 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHA13: 94%|█████████▍| 15/16 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 16/16 [00:01<00:00, 9.64it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 16/16 [00:01<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory