Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/52df31a6a8c8f75c89c3c722d55052/659_bNS-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/2cb56d52c9912f948e8d67c400308d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/2cb56d52c9912f948e8d67c400308d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/7bf12999cff785c81798b54fe1cce0/659_bNS-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
EML4--ALK
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
IGFL1P2--HIF3A
arriba
TVP23C--CDRT4
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba

  0%|          | 0/16 [00:00<?, ?it/s]
Processing EML4--ALK:   0%|          | 0/16 [00:00<?, ?it/s]
Processing EML4--ALK:   6%|▋         | 1/16 [00:00<00:01,  9.26it/s]
Processing PCDHGB2--PCDHGA8:   6%|▋         | 1/16 [00:00<00:01,  9.26it/s]
Processing PCDHGB2--PCDHGA8:  12%|█▎        | 2/16 [00:00<00:01,  9.48it/s]
Processing PCDHGB2--PCDHGB6:  12%|█▎        | 2/16 [00:00<00:01,  9.48it/s]
Processing PCDHGB2--PCDHGB6:  19%|█▉        | 3/16 [00:00<00:01,  9.56it/s]
Processing PCDHGB2--PCDHGC5:  19%|█▉        | 3/16 [00:00<00:01,  9.56it/s]
Processing PCDHGB2--PCDHGC5:  25%|██▌       | 4/16 [00:00<00:01,  9.59it/s]
Processing PCDHGB2--PCDHGC4:  25%|██▌       | 4/16 [00:00<00:01,  9.59it/s]
Processing PCDHGB2--PCDHGC4:  31%|███▏      | 5/16 [00:00<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  31%|███▏      | 5/16 [00:00<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  38%|███▊      | 6/16 [00:00<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  38%|███▊      | 6/16 [00:00<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  44%|████▍     | 7/16 [00:00<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  44%|████▍     | 7/16 [00:00<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  50%|█████     | 8/16 [00:00<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGC3:  50%|█████     | 8/16 [00:00<00:00,  9.63it/s] 
Processing PCDHGB2--PCDHGC3:  56%|█████▋    | 9/16 [00:00<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  56%|█████▋    | 9/16 [00:00<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  62%|██████▎   | 10/16 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  62%|██████▎   | 10/16 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  69%|██████▉   | 11/16 [00:01<00:00,  9.65it/s]
Processing IGFL1P2--HIF3A:  69%|██████▉   | 11/16 [00:01<00:00,  9.65it/s]  
Processing IGFL1P2--HIF3A:  75%|███████▌  | 12/16 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  75%|███████▌  | 12/16 [00:01<00:00,  9.65it/s] 
Processing TVP23C--CDRT4:  81%|████████▏ | 13/16 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC1:  81%|████████▏ | 13/16 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC1:  88%|████████▊ | 14/16 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  88%|████████▊ | 14/16 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  94%|█████████▍| 15/16 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13:  94%|█████████▍| 15/16 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 16/16 [00:01<00:00,  9.64it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 16/16 [00:01<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory