AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 111
Pass (FILTER=PASS): 8 (7.2%)
Fail (FILTER=FAIL): 103 (92.8%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 3
All 3 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 23
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 19
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 18
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 7
confidence_below_min(low<high): 6
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 4
total_reads_below_min(7.0<8.0): 2
total_reads_below_min(3.0<8.0): 2
confidence_below_min(medium<high);aih_curated_blacklist: 2
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
total_reads_below_min(2.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 1
Breakdown by confidence:
high: 8 pass, 5 fail (total: 13)
low: 0 pass, 45 fail (total: 45)
medium: 0 pass, 53 fail (total: 53)
Arriba filter: 111 rows -> 8 PASS; wrote tih_rna_sample_00467_B23WHTKLT4_1.arriba.fusions.filtered.tsv and tih_rna_sample_00467_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00467_B23WHTKLT4_1.arriba.fusions.filter_summary.txt