Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/f8b18438b95795b10b5857da5de919/659_bGc-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/110bfb9524c6e393e053ff7fd817e2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/110bfb9524c6e393e053ff7fd817e2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/7871574d06854b6d8e2b4de77fa767/659_bGc-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/6 [00:00<?, ?it/s]KIF5B--RET
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TVP23C--CDRT4
arriba
PCDHA3--PCDHAC2
arriba
PCDHA3--PCDHAC1
arriba
PCDHA3--PCDHA13
arriba

Processing KIF5B--RET:   0%|          | 0/6 [00:00<?, ?it/s]
Processing KIF5B--RET:  17%|█▋        | 1/6 [00:00<00:00,  9.20it/s]
Processing TLK2P1--AC110079.1:  17%|█▋        | 1/6 [00:00<00:00,  9.20it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 2/6 [00:00<00:00,  9.35it/s]
Processing TVP23C--CDRT4:  33%|███▎      | 2/6 [00:00<00:00,  9.35it/s]     
Processing TVP23C--CDRT4:  50%|█████     | 3/6 [00:00<00:00,  9.39it/s]
Processing PCDHA3--PCDHAC2:  50%|█████     | 3/6 [00:00<00:00,  9.39it/s]
Processing PCDHA3--PCDHAC2:  67%|██████▋   | 4/6 [00:00<00:00,  9.41it/s]
Processing PCDHA3--PCDHAC1:  67%|██████▋   | 4/6 [00:00<00:00,  9.41it/s]
Processing PCDHA3--PCDHAC1:  83%|████████▎ | 5/6 [00:00<00:00,  9.43it/s]
Processing PCDHA3--PCDHA13:  83%|████████▎ | 5/6 [00:00<00:00,  9.43it/s]
Processing PCDHA3--PCDHA13: 100%|██████████| 6/6 [00:00<00:00,  9.43it/s]
Processing PCDHA3--PCDHA13: 100%|██████████| 6/6 [00:00<00:00,  9.40it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory