Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/1802f773101f279965a5057dc9b41c/659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/a458c223244feb48564720677c74f8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/a458c223244feb48564720677c74f8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/31e4ce64f6d1ae3ad80c5e6631c367/659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1