AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 70
Pass (FILTER=PASS): 5 (7.1%)
Fail (FILTER=FAIL): 65 (92.9%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 3
All 3 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 12
confidence_below_min(medium<high): 10
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 3
total_reads_below_min(4.0<8.0): 2
total_reads_below_min(3.0<8.0): 2
confidence_below_min(medium<high);aih_curated_blacklist: 2
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
total_reads_below_min(6.0<8.0): 1
total_reads_below_min(2.0<8.0): 1
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 1
Breakdown by confidence:
high: 5 pass, 6 fail (total: 11)
low: 0 pass, 39 fail (total: 39)
medium: 0 pass, 20 fail (total: 20)
Arriba filter: 70 rows -> 5 PASS; wrote 659_epP-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered.tsv and 659_epP-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_epP-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filter_summary.txt