Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/5eec44242c038497b3266ecf5aa7a8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/5eec44242c038497b3266ecf5aa7a8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/afda02a89e2e952f66dfce7aa1fe9b/659_cIX-T1-TRNA-1_B23WHTKLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/476cfa8eac2e4490932318ca0eb19e/659_cIX-T1-TRNA-1_B23WHTKLT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_cIX-T1-TRNA-1_B23WHTKLT4_1/abundance.h5
Successfully converted 659_cIX-T1-TRNA-1_B23WHTKLT4_1/abundance.h5 to 659_cIX-T1-TRNA-1_B23WHTKLT4_1_kallisto_mqc.tsv
  Sample: 659_cIX-T1-TRNA-1_B23WHTKLT4_1
  Mean Fragment Length: 146.5 bp
  Median Fragment Length: 134.0 bp
  pct_mito_est_counts: 0.003%
  pct_ribo_est_counts: 0.933%
  pct_hk_est_counts: 0.52%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.007%
  pct_ribo_tpm: 3.119%
  pct_hk_tpm: 0.814%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.024%