AIH curated blacklist: matched 5 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 59
Pass (FILTER=PASS): 1 (1.7%)
Fail (FILTER=FAIL): 58 (98.3%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 5
All 5 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 11
confidence_below_min(medium<high): 10
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 5
confidence_below_min(medium<high);aih_curated_blacklist: 4
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
total_reads_below_min(6.0<8.0): 1
total_reads_below_min(4.0<8.0): 1
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 1
confidence_below_min(low<high): 1
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 1
Breakdown by confidence:
high: 1 pass, 2 fail (total: 3)
low: 0 pass, 27 fail (total: 27)
medium: 0 pass, 29 fail (total: 29)
Arriba filter: 59 rows -> 1 PASS; wrote 659_cRB-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered.tsv and 659_cRB-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_cRB-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filter_summary.txt