File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/a853c2c282c941a4511c3b05438339/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:21:34
                             Started mapping on |	Jun 08 10:27:57
                                    Finished on |	Jun 08 11:26:44
       Mapping speed, Million of reads per hour |	301.44

                          Number of input reads |	295329865
                      Average input read length |	262
                                    UNIQUE READS:
                   Uniquely mapped reads number |	282075484
                        Uniquely mapped reads % |	95.51%
                          Average mapped length |	261.64
                       Number of splices: Total |	312951623
            Number of splices: Annotated (sjdb) |	307301671
                       Number of splices: GT/AG |	308837366
                       Number of splices: GC/AG |	2215911
                       Number of splices: AT/AC |	222627
               Number of splices: Non-canonical |	1675719
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.24
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.75
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10013790
             % of reads mapped to multiple loci |	3.39%
        Number of reads mapped to too many loci |	826171
             % of reads mapped to too many loci |	0.28%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2080508
                 % of reads unmapped: too short |	0.70%
                Number of reads unmapped: other |	333912
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%