Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/b712e026ec488936922f10b168f532/tih_rna_sample_00158_B23WHTKLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/64365244d868a44f4f27bd67d31a3a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/64365244d868a44f4f27bd67d31a3a/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory