File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/6be1caaa6da918df205fb85bd53b7d/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:58:43
                             Started mapping on |	Jun 08 10:05:19
                                    Finished on |	Jun 08 11:16:57
       Mapping speed, Million of reads per hour |	229.40

                          Number of input reads |	273881992
                      Average input read length |	257
                                    UNIQUE READS:
                   Uniquely mapped reads number |	262956225
                        Uniquely mapped reads % |	96.01%
                          Average mapped length |	256.40
                       Number of splices: Total |	303109177
            Number of splices: Annotated (sjdb) |	298078206
                       Number of splices: GT/AG |	299473499
                       Number of splices: GC/AG |	1926243
                       Number of splices: AT/AC |	206836
               Number of splices: Non-canonical |	1502599
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.21
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.79
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7981897
             % of reads mapped to multiple loci |	2.91%
        Number of reads mapped to too many loci |	451162
             % of reads mapped to too many loci |	0.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2144256
                 % of reads unmapped: too short |	0.78%
                Number of reads unmapped: other |	348452
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%