File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/03e04a21535654804eb3e38c9a004f/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:20:26
                             Started mapping on |	Jun 08 09:26:45
                                    Finished on |	Jun 08 10:20:14
       Mapping speed, Million of reads per hour |	248.47

                          Number of input reads |	221480950
                      Average input read length |	264
                                    UNIQUE READS:
                   Uniquely mapped reads number |	211962069
                        Uniquely mapped reads % |	95.70%
                          Average mapped length |	263.68
                       Number of splices: Total |	233667908
            Number of splices: Annotated (sjdb) |	229593854
                       Number of splices: GT/AG |	230798016
                       Number of splices: GC/AG |	1653385
                       Number of splices: AT/AC |	211540
               Number of splices: Non-canonical |	1004967
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.04
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.83
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7218932
             % of reads mapped to multiple loci |	3.26%
        Number of reads mapped to too many loci |	367057
             % of reads mapped to too many loci |	0.17%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1600926
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	331966
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%